Wall clock time and date at job start Mon Mar 30 2020 08:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00295 * 2 1 4 4 H 1.48497 * 109.47320 * 269.99678 * 3 2 1 5 5 H 1.48502 * 109.46925 * 29.99890 * 3 2 1 6 6 H 1.48502 * 109.47106 * 149.99817 * 3 2 1 7 7 C 1.37879 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99702 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00050 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.46240 * 59.98001 * 9 7 2 11 11 C 1.53043 * 109.46365 * 179.88906 * 9 7 2 12 12 C 1.53115 * 109.27695 * 179.13453 * 11 9 7 13 13 H 1.08998 * 109.52612 * 62.36933 * 12 11 9 14 14 C 1.50699 * 109.52545 * 182.50088 * 12 11 9 15 15 N 1.31879 * 119.62692 * 59.86654 * 14 12 11 16 16 C 1.31855 * 121.73741 * 180.02562 * 15 14 12 17 17 C 1.38234 * 120.79301 * 359.97438 * 16 15 14 18 18 C 1.38601 * 119.17636 * 0.25744 * 17 16 15 19 19 C 1.38306 * 119.62817 * 239.89225 * 14 12 11 20 20 Cl 1.73604 * 120.43193 * 359.97438 * 19 14 12 21 21 C 1.53120 * 109.20886 * 302.43255 * 12 11 9 22 22 C 1.53036 * 109.27779 * 57.62791 * 21 12 11 23 23 N 1.46849 * 109.46189 * 300.00051 * 9 7 2 24 24 H 0.97005 * 119.99278 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.45947 * 59.21500 * 11 9 7 26 26 H 1.09011 * 109.55228 * 299.09961 * 11 9 7 27 27 H 1.07993 * 119.60130 * 179.97438 * 16 15 14 28 28 H 1.08002 * 120.40833 * 179.97438 * 17 16 15 29 29 H 1.07994 * 120.79849 * 179.74680 * 18 17 16 30 30 H 1.09007 * 109.50603 * 177.56223 * 21 12 11 31 31 H 1.08995 * 109.50725 * 297.68541 * 21 12 11 32 32 H 1.08995 * 109.46490 * 60.83484 * 22 21 12 33 33 H 1.08999 * 109.46367 * 180.81367 * 22 21 12 34 34 H 1.00901 * 110.99927 * 54.14646 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8743 -0.6798 0.8910 11 6 4.0214 -2.6372 0.0044 12 6 5.5523 -2.6324 -0.0168 13 1 5.9277 -2.1483 0.8847 14 6 6.0597 -4.0502 -0.0756 15 7 5.7235 -4.8213 -1.0913 16 6 6.1432 -6.0678 -1.1844 17 6 6.9586 -6.6146 -0.2112 18 6 7.3298 -5.8370 0.8744 19 6 6.8722 -4.5281 0.9364 20 17 7.3098 -3.5059 2.2696 21 6 6.0367 -1.8641 -1.2496 22 6 5.4685 -0.4436 -1.2151 23 7 4.0013 -0.5022 -1.1979 24 1 -0.4849 0.8401 -0.0004 25 1 3.6467 -3.1567 -0.8775 26 1 3.6715 -3.1457 0.9030 27 1 5.8463 -6.6688 -2.0311 28 1 7.2984 -7.6364 -0.2935 29 1 7.9625 -6.2388 1.6518 30 1 7.1259 -1.8205 -1.2466 31 1 5.6947 -2.3710 -2.1519 32 1 5.8220 0.0674 -0.3196 33 1 5.7997 0.1016 -2.0989 34 1 3.6016 0.4214 -1.2710 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260145401.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:14 Heat of formation + Delta-G solvation = 6.379717 kcal Electronic energy + Delta-G solvation = -18084.358871 eV Core-core repulsion = 15234.693474 eV Total energy + Delta-G solvation = -2849.665397 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49729 -39.37879 -37.64382 -35.24090 -34.14063 -33.10586 -32.05213 -30.84071 -27.24533 -25.70948 -24.51295 -23.28974 -22.47402 -20.49796 -18.93824 -18.05245 -17.83841 -17.37657 -16.65974 -15.93782 -15.57057 -15.50710 -15.09048 -14.72120 -14.65878 -14.31055 -14.02848 -13.82319 -13.31520 -13.04846 -12.86846 -12.67364 -12.55385 -12.45696 -11.89948 -11.80501 -11.46459 -11.29072 -11.14985 -10.83544 -10.70365 -10.34545 -9.77603 -9.17548 -8.34025 -6.39878 -0.05422 0.20030 1.03553 1.22524 1.28201 1.35910 2.24251 2.68322 2.92515 3.23327 3.54000 3.62669 3.84618 3.99199 4.04409 4.13634 4.22046 4.42335 4.45343 4.58286 4.64753 4.76354 4.79845 4.85173 4.98859 5.01331 5.03844 5.14529 5.31607 5.49296 5.52066 5.64162 6.23540 6.42660 6.50137 6.73765 6.97225 7.25288 8.82997 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.005770 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.496406 B = 4851.620057 C = 5063.902517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.017 3.983 3 Si 0.939 3.061 4 H -0.253 1.253 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.514 4.514 8 H 0.035 0.965 9 C 0.188 3.812 10 H -0.010 1.010 11 C -0.067 4.067 12 C -0.047 4.047 13 H 0.087 0.913 14 C 0.139 3.861 15 N -0.492 5.492 16 C 0.095 3.905 17 C -0.154 4.154 18 C -0.065 4.065 19 C -0.102 4.102 20 Cl -0.057 7.057 21 C -0.087 4.087 22 C 0.045 3.955 23 N -0.693 5.693 24 H 0.268 0.732 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.187 0.813 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.284 -10.656 0.720 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.178 1.178 5 H -0.214 1.214 6 H -0.181 1.181 7 C -0.553 4.553 8 H 0.053 0.947 9 C 0.081 3.919 10 H 0.008 0.992 11 C -0.105 4.105 12 C -0.066 4.066 13 H 0.105 0.895 14 C 0.001 3.999 15 N -0.201 5.201 16 C -0.063 4.063 17 C -0.174 4.174 18 C -0.091 4.091 19 C -0.131 4.131 20 Cl -0.028 7.028 21 C -0.125 4.125 22 C -0.084 4.084 23 N -0.331 5.331 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.204 0.796 28 H 0.202 0.798 29 H 0.189 0.811 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.107 0.893 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.606 -10.678 -0.201 22.326 hybrid contribution 0.167 1.233 1.501 1.949 sum 19.773 -9.445 1.300 21.951 Atomic orbital electron populations 1.70039 1.08032 1.28157 1.52047 1.25873 0.95569 1.02885 0.93759 0.85956 0.79070 0.79110 0.79456 1.17787 1.21370 1.18130 1.21273 0.90836 0.93280 1.49871 0.94702 1.19376 0.93007 0.92607 0.86941 0.99217 1.21215 0.92881 0.96212 1.00223 1.20359 0.95728 0.90107 1.00388 0.89511 1.21053 0.92897 0.96403 0.89505 1.67619 1.22204 1.07091 1.23201 1.23517 0.92868 0.90470 0.99422 1.22564 0.98523 1.02888 0.93379 1.21907 0.97523 0.90355 0.99342 1.22053 1.03575 0.94810 0.92670 1.98362 1.91563 1.68019 1.44903 1.21419 0.99656 0.94244 0.97227 1.22103 0.88230 0.97420 1.00609 1.60937 1.06664 1.22144 1.43332 0.92291 0.92819 0.94002 0.79597 0.79844 0.81075 0.90076 0.91385 0.95697 0.89346 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.00 13.96 21.45 0.30 -59.70 16 2 C 0.02 1.04 5.47 84.65 0.46 1.51 16 3 Si 0.94 44.87 24.66 68.60 1.69 46.56 16 4 H -0.25 -11.25 6.95 99.48 0.69 -10.56 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 7 C -0.51 -30.87 9.34 25.60 0.24 -30.63 16 8 H 0.03 2.32 7.99 -2.91 -0.02 2.30 16 9 C 0.19 9.39 1.90 44.19 0.08 9.47 16 10 H -0.01 -0.48 7.20 -2.39 -0.02 -0.50 16 11 C -0.07 -2.95 4.52 30.65 0.14 -2.81 16 12 C -0.05 -1.63 2.40 -11.46 -0.03 -1.66 16 13 H 0.09 2.96 6.16 -2.39 -0.01 2.95 16 14 C 0.14 4.26 5.47 42.57 0.23 4.49 16 15 N -0.49 -14.74 9.73 -183.80 -1.79 -16.53 16 16 C 0.09 1.95 11.18 84.69 0.95 2.89 16 17 C -0.15 -2.30 10.11 22.36 0.23 -2.08 16 18 C -0.07 -1.16 9.98 22.49 0.22 -0.93 16 19 C -0.10 -2.57 6.34 22.42 0.14 -2.43 16 20 Cl -0.06 -1.41 27.04 -2.72 -0.07 -1.48 16 21 C -0.09 -2.86 5.30 30.65 0.16 -2.70 16 22 C 0.05 1.62 6.55 86.32 0.57 2.18 16 23 N -0.69 -31.61 6.42 -495.56 -3.18 -34.79 16 24 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 25 H 0.05 2.56 7.98 -2.39 -0.02 2.54 16 26 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 28 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.07 2.40 7.98 -2.39 -0.02 2.38 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.32 14.65 3.98 -89.69 -0.36 14.29 16 Total: -1.00 -71.68 287.29 1.03 -70.66 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.68 Total: 17.99 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 3.40 Total: -22.71 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -4.67 Total: -111.02 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.69 Total: 46.56 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.07 Total: -1.48 kcal Total: -71.68 1.03 -70.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145401.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.036 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds