Wall clock time and date at job start Mon Mar 30 2020 08:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00251 * 2 1 4 4 H 1.48494 * 109.47490 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47171 * 299.99933 * 3 2 1 6 6 H 1.48495 * 109.46976 * 59.99713 * 3 2 1 7 7 C 1.37878 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.45658 * 300.03072 * 9 7 2 11 11 C 1.53040 * 109.46368 * 180.02562 * 9 7 2 12 12 C 1.53119 * 109.28089 * 299.16641 * 11 9 7 13 13 H 1.08999 * 109.51878 * 62.24548 * 12 11 9 14 14 C 1.50693 * 109.57354 * 182.40778 * 12 11 9 15 15 N 1.31875 * 119.63215 * 59.71889 * 14 12 11 16 16 C 1.31846 * 121.74508 * 179.97438 * 15 14 12 17 17 C 1.38233 * 120.78897 * 359.97438 * 16 15 14 18 18 C 1.38607 * 119.17775 * 0.02562 * 17 16 15 19 19 C 1.38305 * 119.62693 * 239.43707 * 14 12 11 20 20 Cl 1.73598 * 120.43078 * 0.02562 * 19 14 12 21 21 C 1.53124 * 109.15841 * 302.34776 * 12 11 9 22 22 C 1.53032 * 109.28012 * 57.65244 * 21 12 11 23 23 N 1.46846 * 109.52260 * 300.82015 * 22 21 12 24 24 H 0.97000 * 119.99707 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.50602 * 179.22400 * 11 9 7 26 26 H 1.08998 * 109.50366 * 59.10920 * 11 9 7 27 27 H 1.07996 * 119.60706 * 179.97438 * 16 15 14 28 28 H 1.08004 * 120.40803 * 179.97438 * 17 16 15 29 29 H 1.07998 * 120.79122 * 180.02562 * 18 17 16 30 30 H 1.08999 * 109.49853 * 297.70868 * 21 12 11 31 31 H 1.08994 * 109.53481 * 177.61659 * 21 12 11 32 32 H 1.09001 * 109.46314 * 180.80749 * 22 21 12 33 33 H 1.08997 * 109.46418 * 60.83870 * 22 21 12 34 34 H 1.00904 * 111.00089 * 185.84316 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6243 -2.5566 0.8895 11 6 2.2456 -3.6622 -0.0005 12 6 3.1095 -3.5887 -1.2626 13 1 3.6834 -2.6620 -1.2576 14 6 4.0516 -4.7644 -1.2987 15 7 3.5648 -5.9899 -1.3077 16 6 4.3505 -7.0482 -1.3395 17 6 5.7254 -6.9082 -1.3654 18 6 6.2753 -5.6359 -1.3570 19 6 5.4169 -4.5458 -1.3281 20 17 6.0489 -2.9289 -1.3228 21 6 2.2020 -3.6219 -2.4955 22 6 1.2087 -2.4601 -2.4231 23 7 0.4059 -2.5762 -1.1990 24 1 -0.4850 0.8401 -0.0004 25 1 1.7014 -4.6066 0.0134 26 1 2.8830 -3.5960 0.8812 27 1 3.9146 -8.0363 -1.3454 28 1 6.3633 -7.7793 -1.3910 29 1 7.3461 -5.4962 -1.3771 30 1 1.6571 -4.5656 -2.5208 31 1 2.8078 -3.5273 -3.3966 32 1 0.5517 -2.4893 -3.2924 33 1 1.7539 -1.5163 -2.4118 34 1 -0.3203 -1.8760 -1.1750 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260145405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:17 Heat of formation + Delta-G solvation = 17.544727 kcal Electronic energy + Delta-G solvation = -18343.259806 eV Core-core repulsion = 15494.078561 eV Total energy + Delta-G solvation = -2849.181246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30656 -37.51026 -36.45552 -33.37627 -32.18308 -31.61330 -29.70867 -29.17982 -25.16650 -24.16092 -23.34534 -21.57838 -20.99312 -18.59883 -17.02282 -16.41241 -15.91022 -15.80032 -14.96053 -14.46962 -14.21144 -13.74543 -13.36124 -13.12071 -12.62540 -12.49335 -12.07818 -11.91694 -11.86013 -11.48064 -11.20457 -10.96071 -10.91767 -10.51432 -10.28960 -9.94144 -9.78122 -9.52229 -9.39605 -9.25913 -8.97578 -8.62425 -8.38271 -6.89421 -5.97461 -4.12806 1.02506 1.21325 2.20841 3.25305 3.34441 3.38510 3.76660 4.39660 4.46508 4.71477 4.75852 4.98260 5.22004 5.33323 5.56601 5.69101 5.84109 5.92078 5.95427 6.17938 6.30236 6.51239 6.58739 6.61807 6.71118 6.87722 6.97957 7.12093 7.16765 7.33743 7.74238 7.84087 8.06790 8.26957 8.74383 8.98340 9.19146 9.57336 10.99156 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.006990 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.500021 B = 4004.866426 C = 4752.909446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.066 3.934 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.206 3.794 10 H 0.040 0.960 11 C -0.084 4.084 12 C -0.041 4.041 13 H 0.100 0.900 14 C 0.167 3.833 15 N -0.460 5.460 16 C 0.102 3.898 17 C -0.181 4.181 18 C -0.069 4.069 19 C -0.094 4.094 20 Cl -0.049 7.049 21 C -0.092 4.092 22 C 0.070 3.930 23 N -0.688 5.688 24 H 0.262 0.738 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.158 0.842 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.620 -10.753 -4.010 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.136 4.136 3 Si 0.713 3.287 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.574 4.574 8 H 0.074 0.926 9 C 0.097 3.903 10 H 0.058 0.942 11 C -0.122 4.122 12 C -0.060 4.060 13 H 0.118 0.882 14 C 0.029 3.971 15 N -0.168 5.168 16 C -0.056 4.056 17 C -0.201 4.201 18 C -0.095 4.095 19 C -0.123 4.123 20 Cl -0.021 7.021 21 C -0.130 4.130 22 C -0.060 4.060 23 N -0.322 5.322 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.176 0.824 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.603 -11.294 -3.997 15.354 hybrid contribution 1.901 2.132 0.030 2.856 sum 11.504 -9.161 -3.967 15.232 Atomic orbital electron populations 1.69736 1.05782 1.26745 1.51264 1.24985 0.94813 0.99019 0.94747 0.86637 0.80340 0.84090 0.77605 1.19780 1.21073 1.20991 1.21900 0.93592 0.91665 1.50291 0.92582 1.19055 0.90333 0.90553 0.90340 0.94164 1.21500 0.96992 0.99868 0.93868 1.20451 0.94762 0.92595 0.98214 0.88209 1.21799 0.90552 0.94010 0.90759 1.67739 1.39384 0.98013 1.11691 1.22919 0.90323 0.98016 0.94306 1.22051 0.96830 0.97280 1.03961 1.21473 1.00217 0.91329 0.96524 1.22013 0.94787 0.87552 1.07951 1.98382 1.86303 1.20565 1.96808 1.21448 0.96607 1.00246 0.94727 1.21515 0.94784 0.96310 0.93410 1.60911 1.15039 1.54747 1.01482 0.92749 0.92779 0.93784 0.82448 0.84437 0.84279 0.91587 0.93937 0.93872 0.94494 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 11.56 55.43 0.64 -24.15 16 2 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.53 -14.19 6.47 -34.44 -0.22 -14.42 16 8 H 0.06 1.50 6.76 -52.48 -0.35 1.14 16 9 C 0.21 5.14 3.04 -68.88 -0.21 4.93 16 10 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 11 C -0.08 -1.83 4.78 -26.65 -0.13 -1.96 16 12 C -0.04 -0.82 2.15 -91.65 -0.20 -1.01 16 13 H 0.10 2.12 4.75 -51.93 -0.25 1.87 16 14 C 0.17 2.90 5.47 -82.55 -0.45 2.45 16 15 N -0.46 -7.55 9.73 -9.45 -0.09 -7.64 16 16 C 0.10 1.27 11.18 -17.55 -0.20 1.07 16 17 C -0.18 -1.92 10.11 -39.45 -0.40 -2.32 16 18 C -0.07 -0.83 9.98 -39.24 -0.39 -1.22 16 19 C -0.09 -1.45 6.34 -39.36 -0.25 -1.70 16 20 Cl -0.05 -0.77 27.03 -51.86 -1.40 -2.17 16 21 C -0.09 -1.81 5.30 -26.65 -0.14 -1.95 16 22 C 0.07 1.54 6.30 -3.84 -0.02 1.52 16 23 N -0.69 -16.59 6.60 -107.99 -0.71 -17.30 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.05 1.18 7.98 -51.93 -0.41 0.76 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.07 1.31 7.98 -51.93 -0.41 0.90 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.89 6.99 -51.93 -0.36 0.53 16 34 H 0.36 9.21 6.95 -39.29 -0.27 8.93 16 LS Contribution 288.75 15.07 4.35 4.35 Total: -1.00 -28.25 288.75 -9.10 -37.35 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.16 Total: 6.38 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.71 Total: -12.93 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.16 Total: -49.09 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.40 Total: -2.17 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.25 -9.10 -37.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.892 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds