Wall clock time and date at job start Mon Mar 30 2020 08:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00251 * 2 1 4 4 H 1.48494 * 109.47490 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47171 * 299.99933 * 3 2 1 6 6 H 1.48495 * 109.46976 * 59.99713 * 3 2 1 7 7 C 1.37878 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.45658 * 300.03072 * 9 7 2 11 11 C 1.53040 * 109.46368 * 180.02562 * 9 7 2 12 12 C 1.53119 * 109.28089 * 299.16641 * 11 9 7 13 13 H 1.08999 * 109.51878 * 62.24548 * 12 11 9 14 14 C 1.50693 * 109.57354 * 182.40778 * 12 11 9 15 15 N 1.31875 * 119.63215 * 59.71889 * 14 12 11 16 16 C 1.31846 * 121.74508 * 179.97438 * 15 14 12 17 17 C 1.38233 * 120.78897 * 359.97438 * 16 15 14 18 18 C 1.38607 * 119.17775 * 0.02562 * 17 16 15 19 19 C 1.38305 * 119.62693 * 239.43707 * 14 12 11 20 20 Cl 1.73598 * 120.43078 * 0.02562 * 19 14 12 21 21 C 1.53124 * 109.15841 * 302.34776 * 12 11 9 22 22 C 1.53032 * 109.28012 * 57.65244 * 21 12 11 23 23 N 1.46846 * 109.52260 * 300.82015 * 22 21 12 24 24 H 0.97000 * 119.99707 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.50602 * 179.22400 * 11 9 7 26 26 H 1.08998 * 109.50366 * 59.10920 * 11 9 7 27 27 H 1.07996 * 119.60706 * 179.97438 * 16 15 14 28 28 H 1.08004 * 120.40803 * 179.97438 * 17 16 15 29 29 H 1.07998 * 120.79122 * 180.02562 * 18 17 16 30 30 H 1.08999 * 109.49853 * 297.70868 * 21 12 11 31 31 H 1.08994 * 109.53481 * 177.61659 * 21 12 11 32 32 H 1.09001 * 109.46314 * 180.80749 * 22 21 12 33 33 H 1.08997 * 109.46418 * 60.83870 * 22 21 12 34 34 H 1.00904 * 111.00089 * 185.84316 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6243 -2.5566 0.8895 11 6 2.2456 -3.6622 -0.0005 12 6 3.1095 -3.5887 -1.2626 13 1 3.6834 -2.6620 -1.2576 14 6 4.0516 -4.7644 -1.2987 15 7 3.5648 -5.9899 -1.3077 16 6 4.3505 -7.0482 -1.3395 17 6 5.7254 -6.9082 -1.3654 18 6 6.2753 -5.6359 -1.3570 19 6 5.4169 -4.5458 -1.3281 20 17 6.0489 -2.9289 -1.3228 21 6 2.2020 -3.6219 -2.4955 22 6 1.2087 -2.4601 -2.4231 23 7 0.4059 -2.5762 -1.1990 24 1 -0.4850 0.8401 -0.0004 25 1 1.7014 -4.6066 0.0134 26 1 2.8830 -3.5960 0.8812 27 1 3.9146 -8.0363 -1.3454 28 1 6.3633 -7.7793 -1.3910 29 1 7.3461 -5.4962 -1.3771 30 1 1.6571 -4.5656 -2.5208 31 1 2.8078 -3.5273 -3.3966 32 1 0.5517 -2.4893 -3.2924 33 1 1.7539 -1.5163 -2.4118 34 1 -0.3203 -1.8760 -1.1750 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260145405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:16 Heat of formation + Delta-G solvation = -0.122500 kcal Electronic energy + Delta-G solvation = -18344.025915 eV Core-core repulsion = 15494.078561 eV Total energy + Delta-G solvation = -2849.947354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43977 -39.21587 -37.59664 -35.04490 -33.65050 -32.97803 -31.55765 -30.56450 -27.18004 -25.50191 -24.42230 -23.33049 -22.47041 -20.40384 -18.10660 -18.00221 -17.50217 -17.16075 -16.55789 -16.23476 -15.39632 -15.15354 -14.95285 -14.59299 -14.33780 -13.81525 -13.70653 -13.36159 -13.21063 -13.01225 -12.93929 -12.81468 -12.44056 -12.37422 -12.16832 -11.51676 -11.26230 -11.17075 -11.08520 -10.69952 -10.54163 -10.25922 -9.72350 -8.90078 -8.03391 -6.26685 -0.01277 0.22487 1.09670 1.33941 1.37863 1.47567 2.38962 2.72402 3.11665 3.33182 3.65225 3.88653 4.01163 4.05738 4.21641 4.31296 4.42787 4.49634 4.73797 4.78292 4.87914 4.93773 5.00957 5.05395 5.14205 5.26556 5.29189 5.37586 5.55874 5.65860 5.71161 5.76450 6.21530 6.73333 6.94631 7.00342 7.12837 7.46202 8.90370 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.006990 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.500021 B = 4004.866426 C = 4752.909446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.204 3.796 10 H 0.005 0.995 11 C -0.072 4.072 12 C -0.034 4.034 13 H 0.083 0.917 14 C 0.139 3.861 15 N -0.490 5.490 16 C 0.096 3.904 17 C -0.156 4.156 18 C -0.066 4.066 19 C -0.107 4.107 20 Cl -0.063 7.063 21 C -0.082 4.082 22 C 0.071 3.929 23 N -0.687 5.687 24 H 0.264 0.736 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.191 0.809 28 H 0.185 0.815 29 H 0.169 0.831 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.013 0.987 34 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.780 -12.544 -4.792 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.068 0.932 9 C 0.096 3.904 10 H 0.023 0.977 11 C -0.110 4.110 12 C -0.053 4.053 13 H 0.101 0.899 14 C 0.001 3.999 15 N -0.199 5.199 16 C -0.062 4.062 17 C -0.175 4.175 18 C -0.092 4.092 19 C -0.136 4.136 20 Cl -0.034 7.034 21 C -0.121 4.121 22 C -0.059 4.059 23 N -0.319 5.319 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.208 0.792 28 H 0.202 0.798 29 H 0.187 0.813 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.773 -13.091 -4.782 18.244 hybrid contribution 1.249 2.544 0.278 2.848 sum 13.022 -10.547 -4.504 17.352 Atomic orbital electron populations 1.69838 1.06799 1.27411 1.51819 1.25625 0.95560 1.01822 0.94612 0.85743 0.79189 0.80595 0.77609 1.19599 1.20663 1.20670 1.22029 0.93305 0.92541 1.50095 0.93194 1.18983 0.90405 0.91594 0.89458 0.97714 1.21289 0.96442 0.98082 0.95198 1.20153 0.94717 0.93731 0.96688 0.89905 1.21261 0.90788 0.93633 0.94170 1.67634 1.41079 0.98436 1.12757 1.23567 0.91326 0.98152 0.93144 1.22558 0.96539 0.98135 1.00303 1.21895 1.01380 0.90808 0.95164 1.22114 0.94564 0.87912 1.09001 1.98373 1.86244 1.21870 1.96958 1.21348 0.96185 0.98819 0.95714 1.21585 0.95145 0.96286 0.92907 1.60924 1.14940 1.53949 1.02083 0.92669 0.93067 0.94494 0.79190 0.79750 0.81333 0.91698 0.92134 0.92222 0.96892 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.02 11.56 21.45 0.25 -51.77 16 2 C 0.02 1.27 5.39 84.65 0.46 1.73 16 3 Si 0.94 43.94 29.54 68.60 2.03 45.96 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.54 -29.49 6.47 25.60 0.17 -29.32 16 8 H 0.05 2.74 6.76 -2.91 -0.02 2.72 16 9 C 0.20 10.62 3.04 44.19 0.13 10.75 16 10 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 11 C -0.07 -3.22 4.78 30.65 0.15 -3.08 16 12 C -0.03 -1.35 2.15 -11.46 -0.02 -1.37 16 13 H 0.08 3.58 4.75 -2.39 -0.01 3.57 16 14 C 0.14 4.70 5.47 42.57 0.23 4.93 16 15 N -0.49 -15.23 9.73 -183.81 -1.79 -17.01 16 16 C 0.10 2.02 11.18 84.69 0.95 2.97 16 17 C -0.16 -2.53 10.11 22.36 0.23 -2.31 16 18 C -0.07 -1.35 9.98 22.49 0.22 -1.13 16 19 C -0.11 -3.11 6.34 22.42 0.14 -2.97 16 20 Cl -0.06 -1.93 27.03 -2.72 -0.07 -2.01 16 21 C -0.08 -3.23 5.30 30.65 0.16 -3.07 16 22 C 0.07 3.15 6.30 86.32 0.54 3.70 16 23 N -0.69 -34.11 6.60 -495.57 -3.27 -37.39 16 24 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.05 2.29 7.98 -2.39 -0.02 2.27 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 28 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 29 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.06 2.55 7.98 -2.39 -0.02 2.53 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.01 0.63 6.99 -2.39 -0.02 0.62 16 34 H 0.34 18.36 6.95 -89.69 -0.62 17.74 16 Total: -1.00 -62.89 288.75 0.99 -61.90 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.49 Total: 19.48 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 3.36 Total: -19.17 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -4.81 Total: -106.17 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.07 Total: -2.01 kcal Total: -62.89 0.99 -61.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.780 kcal (2) G-P(sol) polarization free energy of solvation -62.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds