Wall clock time and date at job start Mon Mar 30 2020 08:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99639 * 2 1 4 4 H 1.48499 * 109.46947 * 269.99278 * 3 2 1 5 5 H 1.48493 * 109.47336 * 29.99829 * 3 2 1 6 6 H 1.48499 * 109.46905 * 149.99896 * 3 2 1 7 7 C 1.37875 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99639 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00302 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46353 * 59.97206 * 9 7 2 11 11 C 1.53035 * 109.46521 * 179.97438 * 9 7 2 12 12 C 1.53122 * 109.27609 * 60.83907 * 11 9 7 13 13 H 1.09005 * 109.57330 * 297.71378 * 12 11 9 14 14 C 1.50701 * 109.51885 * 177.56302 * 12 11 9 15 15 N 1.31876 * 119.62726 * 300.33119 * 14 12 11 16 16 C 1.31854 * 121.74116 * 180.02562 * 15 14 12 17 17 C 1.38227 * 120.79198 * 359.95300 * 16 15 14 18 18 C 1.38615 * 119.17557 * 0.02562 * 17 16 15 19 19 C 1.38312 * 119.62870 * 120.31542 * 14 12 11 20 20 Cl 1.73600 * 120.43007 * 0.02562 * 19 14 12 21 21 C 1.53114 * 109.16451 * 57.65419 * 12 11 9 22 22 C 1.53033 * 109.27631 * 302.34715 * 21 12 11 23 23 N 1.46842 * 109.52654 * 59.17728 * 22 21 12 24 24 H 0.96994 * 120.00322 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.50319 * 300.89385 * 11 9 7 26 26 H 1.08999 * 109.50329 * 180.77355 * 11 9 7 27 27 H 1.07993 * 119.60529 * 179.97438 * 16 15 14 28 28 H 1.07998 * 120.41122 * 180.29565 * 17 16 15 29 29 H 1.08001 * 120.79493 * 179.97438 * 18 17 16 30 30 H 1.09000 * 109.50284 * 62.28687 * 21 12 11 31 31 H 1.08999 * 109.50111 * 182.36708 * 21 12 11 32 32 H 1.09004 * 109.46047 * 179.19868 * 22 21 12 33 33 H 1.09007 * 109.46213 * 299.15945 * 22 21 12 34 34 H 1.00910 * 110.99853 * 62.35951 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6245 -2.5567 -0.8895 11 6 2.2458 -3.6621 0.0005 12 6 3.1096 -3.5885 1.2627 13 1 3.6844 -2.6623 1.2584 14 6 4.0507 -4.7650 1.2981 15 7 3.5628 -5.9902 1.3057 16 6 4.3477 -7.0492 1.3368 17 6 5.7228 -6.9104 1.3618 18 6 6.2738 -5.6384 1.3543 19 6 5.4164 -4.5476 1.3218 20 17 6.0499 -2.9314 1.3118 21 6 2.2021 -3.6219 2.4955 22 6 1.2087 -2.4601 2.4231 23 7 0.4060 -2.5761 1.1990 24 1 -0.4850 0.8400 -0.0004 25 1 2.8832 -3.5958 -0.8811 26 1 1.7016 -4.6064 -0.0133 27 1 3.9111 -8.0369 1.3425 28 1 6.3600 -7.7821 1.3824 29 1 7.3446 -5.4996 1.3737 30 1 1.6572 -4.5656 2.5208 31 1 2.8084 -3.5274 3.3963 32 1 0.5517 -2.4893 3.2924 33 1 1.7539 -1.5162 2.4118 34 1 -0.1391 -3.4253 1.2032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260145410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:19 Heat of formation + Delta-G solvation = 24.803998 kcal Electronic energy + Delta-G solvation = -18341.963355 eV Core-core repulsion = 15493.096895 eV Total energy + Delta-G solvation = -2848.866460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36956 -37.68571 -36.48706 -33.18534 -32.17630 -31.71679 -29.73346 -29.12591 -25.18899 -24.08785 -23.36133 -21.64361 -20.95098 -18.99061 -17.07944 -16.48232 -15.93015 -15.72020 -14.52967 -14.48075 -14.25881 -13.73057 -13.38751 -13.28493 -12.94984 -12.46993 -12.11406 -11.89896 -11.79134 -11.36073 -11.24635 -10.90866 -10.81473 -10.56233 -10.32933 -10.02065 -9.85843 -9.52286 -9.42666 -9.32181 -8.77357 -8.63201 -8.25264 -6.67529 -5.78117 -3.89335 0.97706 1.16302 2.17558 3.37544 3.45084 3.47452 3.71191 4.40759 4.54859 4.67001 4.71038 4.93691 5.28331 5.41013 5.53451 5.62798 5.75317 5.84732 5.91490 6.10308 6.21731 6.35595 6.48108 6.52704 6.59177 6.73594 6.90566 7.00563 7.08106 7.28296 7.70045 7.98493 8.00378 8.31084 8.71774 9.00248 9.30157 9.76883 11.26817 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.007007 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.478993 B = 3994.911922 C = 4750.063620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.872 3.128 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.218 3.782 10 H 0.041 0.959 11 C -0.126 4.126 12 C -0.039 4.039 13 H 0.105 0.895 14 C 0.165 3.835 15 N -0.463 5.463 16 C 0.101 3.899 17 C -0.180 4.180 18 C -0.069 4.069 19 C -0.093 4.093 20 Cl -0.047 7.047 21 C -0.136 4.136 22 C 0.077 3.923 23 N -0.648 5.648 24 H 0.254 0.746 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.158 0.842 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -11.995 3.994 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.111 3.889 10 H 0.059 0.941 11 C -0.166 4.166 12 C -0.058 4.058 13 H 0.123 0.877 14 C 0.027 3.973 15 N -0.172 5.172 16 C -0.056 4.056 17 C -0.201 4.201 18 C -0.095 4.095 19 C -0.122 4.122 20 Cl -0.018 7.018 21 C -0.176 4.176 22 C -0.054 4.054 23 N -0.274 5.274 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.175 0.825 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.469 -11.161 3.954 15.161 hybrid contribution 2.184 0.129 0.067 2.189 sum 11.652 -11.032 4.021 16.543 Atomic orbital electron populations 1.70089 1.05562 1.25374 1.47311 1.24918 0.94517 0.98217 0.94617 0.86940 0.80190 0.84869 0.77972 1.20883 1.21369 1.20062 1.20897 0.92135 0.90123 1.53372 0.92844 1.19149 0.88913 0.91254 0.89629 0.94141 1.22277 0.99079 1.00541 0.94703 1.20416 0.94878 0.92835 0.97632 0.87747 1.21840 0.90677 0.94010 0.90779 1.67711 1.39507 0.98065 1.11917 1.22901 0.90386 0.97950 0.94398 1.22050 0.96794 0.97327 1.03889 1.21489 1.00276 0.91318 0.96433 1.22011 0.94761 0.87684 1.07768 1.98387 1.86221 1.20436 1.96777 1.22251 0.98711 1.01071 0.95561 1.21729 0.93536 0.97260 0.92873 1.60808 1.25883 1.39040 1.01687 0.93636 0.93365 0.93743 0.82486 0.84396 0.84215 0.92526 0.93679 0.93650 0.90091 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.53 12.77 55.43 0.71 -23.82 16 2 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 3 Si 0.87 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.06 6.47 -34.44 -0.22 -14.29 16 8 H 0.05 1.43 6.77 -52.49 -0.36 1.07 16 9 C 0.22 5.36 2.95 -68.88 -0.20 5.16 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.13 -2.66 4.76 -26.65 -0.13 -2.79 16 12 C -0.04 -0.75 2.15 -91.65 -0.20 -0.94 16 13 H 0.10 2.19 4.76 -51.93 -0.25 1.94 16 14 C 0.17 2.83 5.47 -82.55 -0.45 2.38 16 15 N -0.46 -7.46 9.72 -9.45 -0.09 -7.55 16 16 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 17 C -0.18 -1.90 10.11 -39.45 -0.40 -2.30 16 18 C -0.07 -0.82 9.98 -39.24 -0.39 -1.21 16 19 C -0.09 -1.42 6.34 -39.36 -0.25 -1.67 16 20 Cl -0.05 -0.73 27.04 -51.86 -1.40 -2.13 16 21 C -0.14 -2.56 5.28 -26.66 -0.14 -2.70 16 22 C 0.08 1.63 6.30 -3.84 -0.02 1.61 16 23 N -0.65 -15.20 5.98 -107.99 -0.65 -15.84 16 24 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.91 7.97 -51.93 -0.41 0.50 16 27 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.06 1.05 7.98 -51.93 -0.41 0.64 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.93 6.99 -51.92 -0.36 1.57 16 34 H 0.30 6.45 8.86 -39.29 -0.35 6.10 16 LS Contribution 291.12 15.07 4.39 4.39 Total: -1.00 -29.49 291.12 -9.00 -38.49 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.24 Total: 3.75 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.70 Total: -13.52 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.03 Total: -47.22 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.40 Total: -2.13 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.49 -9.00 -38.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.290 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds