Wall clock time and date at job start Mon Mar 30 2020 08:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46514 * 60.00261 * 9 7 2 11 11 C 1.53036 * 109.46271 * 179.97438 * 9 7 2 12 12 C 1.53122 * 109.28103 * 179.19668 * 11 9 7 13 13 H 1.08999 * 109.52245 * 62.24727 * 12 11 9 14 14 C 1.50702 * 109.52449 * 182.37572 * 12 11 9 15 15 C 1.38168 * 120.42789 * 59.99890 * 14 12 11 16 16 N 1.31879 * 120.77707 * 179.97438 * 15 14 12 17 17 C 1.31907 * 121.75470 * 0.02562 * 16 15 14 18 18 C 1.38121 * 120.78439 * 359.97385 * 17 16 15 19 19 C 1.38775 * 120.42344 * 239.72025 * 14 12 11 20 20 Cl 1.73600 * 120.80742 * 0.02562 * 19 14 12 21 21 C 1.53118 * 109.15712 * 302.34395 * 12 11 9 22 22 C 1.53035 * 109.28130 * 57.65511 * 21 12 11 23 23 N 1.46846 * 109.51508 * 300.81530 * 22 21 12 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.50285 * 299.13458 * 11 9 7 26 26 H 1.09001 * 109.50790 * 59.21159 * 11 9 7 27 27 H 1.07999 * 119.60941 * 359.95037 * 15 14 12 28 28 H 1.08001 * 119.60222 * 180.02562 * 17 16 15 29 29 H 1.08002 * 120.42671 * 180.02562 * 18 17 16 30 30 H 1.09007 * 109.50169 * 177.59367 * 21 12 11 31 31 H 1.09002 * 109.50669 * 297.67282 * 21 12 11 32 32 H 1.08999 * 109.46248 * 60.83702 * 22 21 12 33 33 H 1.09005 * 109.46469 * 180.81300 * 22 21 12 34 34 H 1.00901 * 111.00717 * 297.65318 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5566 -0.8903 11 6 2.2457 -3.6622 -0.0018 12 6 1.4759 -4.9858 0.0184 13 1 0.8689 -5.0680 -0.8831 14 6 2.4501 -6.1341 0.0761 15 6 3.3316 -6.2516 1.1337 16 7 4.1866 -7.2539 1.1913 17 6 4.2373 -8.1781 0.2515 18 6 3.3876 -8.1275 -0.8362 19 6 2.4695 -7.0904 -0.9293 20 17 1.3768 -6.9885 -2.2744 21 6 0.5684 -5.0204 1.2512 22 6 -0.3776 -3.8180 1.2163 23 7 0.4070 -2.5769 1.1987 24 1 -0.4850 0.8401 0.0004 25 1 2.8617 -3.6133 -0.8998 26 1 2.8826 -3.5975 0.8803 27 1 3.3204 -5.5136 1.9221 28 1 4.9512 -8.9843 0.3340 29 1 3.4338 -8.8875 -1.6022 30 1 -0.0140 -5.9419 1.2486 31 1 1.1785 -4.9781 2.1536 32 1 -0.9969 -3.8691 0.3208 33 1 -1.0154 -3.8318 2.1001 34 1 0.9610 -2.4873 2.0372 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174180.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:32 Heat of formation + Delta-G solvation = 1.083227 kcal Electronic energy + Delta-G solvation = -18000.695564 eV Core-core repulsion = 15150.800494 eV Total energy + Delta-G solvation = -2849.895070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53408 -39.34840 -37.76089 -35.14628 -33.96959 -32.90310 -31.65640 -30.32440 -27.05268 -25.33886 -24.63437 -23.21108 -22.46150 -20.90369 -18.66560 -18.28953 -17.66601 -16.64485 -16.17595 -15.55121 -15.37460 -15.32237 -15.04675 -14.86169 -14.84177 -14.07855 -14.00308 -13.67561 -13.24564 -12.87942 -12.84529 -12.62877 -12.52366 -12.25636 -12.04329 -11.76747 -11.55076 -11.32586 -10.89356 -10.57276 -10.48425 -10.43931 -9.95036 -8.51534 -7.93303 -6.15104 -0.01967 0.01066 0.92198 1.46443 1.46515 1.53859 2.49370 2.65680 3.27124 3.36004 3.61333 3.65544 3.86819 4.05182 4.11357 4.15942 4.29235 4.48885 4.51006 4.63133 4.69956 4.74890 4.83173 4.92808 5.06645 5.10930 5.21678 5.25785 5.37237 5.54800 5.64528 5.82785 6.25947 6.70547 6.86682 7.17907 7.21284 7.57730 9.09054 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.005328 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.187920 B = 5254.172455 C = 5413.587845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.037 3.963 3 Si 0.944 3.056 4 H -0.287 1.287 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.554 4.554 8 H 0.049 0.951 9 C 0.228 3.772 10 H -0.004 1.004 11 C -0.117 4.117 12 C -0.044 4.044 13 H 0.073 0.927 14 C -0.118 4.118 15 C 0.110 3.890 16 N -0.497 5.497 17 C 0.102 3.898 18 C -0.156 4.156 19 C -0.008 4.008 20 Cl -0.053 7.053 21 C -0.132 4.132 22 C 0.061 3.939 23 N -0.668 5.668 24 H 0.254 0.746 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.163 0.837 28 H 0.200 0.800 29 H 0.173 0.827 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.842 -17.366 -0.077 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.167 4.167 3 Si 0.770 3.230 4 H -0.213 1.213 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.593 4.593 8 H 0.067 0.933 9 C 0.120 3.880 10 H 0.014 0.986 11 C -0.157 4.157 12 C -0.063 4.063 13 H 0.091 0.909 14 C -0.121 4.121 15 C -0.047 4.047 16 N -0.206 5.206 17 C -0.055 4.055 18 C -0.176 4.176 19 C -0.043 4.043 20 Cl -0.024 7.024 21 C -0.172 4.172 22 C -0.070 4.070 23 N -0.296 5.296 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.180 0.820 28 H 0.216 0.784 29 H 0.191 0.809 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.617 -16.912 0.231 17.532 hybrid contribution 0.189 0.623 -0.876 1.091 sum 4.807 -16.288 -0.644 16.995 Atomic orbital electron populations 1.70227 1.07021 1.26288 1.48039 1.25648 0.95335 1.01676 0.94018 0.85874 0.78532 0.80017 0.78584 1.21270 1.19699 1.20145 1.21313 0.92351 0.91880 1.53762 0.93279 1.18811 0.88723 0.91324 0.89116 0.98566 1.22176 0.98669 0.94451 1.00422 1.20194 0.94675 0.91359 1.00108 0.90863 1.20891 0.99386 0.96700 0.95098 1.22705 0.90049 0.95479 0.96457 1.67732 1.21077 1.02990 1.28814 1.23387 0.97021 0.96891 0.88214 1.22414 0.95210 0.98472 1.01499 1.21495 0.94967 0.97227 0.90600 1.98387 1.62491 1.97764 1.43766 1.22252 0.98299 0.99968 0.96663 1.21973 0.96047 0.88080 1.00874 1.60676 1.30595 1.33704 1.04623 0.93682 0.94130 0.92581 0.82007 0.78379 0.80912 0.91061 0.91284 0.93724 0.90868 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.58 12.77 21.45 0.27 -51.31 16 2 C 0.04 2.05 5.39 84.66 0.46 2.51 16 3 Si 0.94 43.69 29.54 68.60 2.03 45.71 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.55 -30.32 8.70 25.60 0.22 -30.10 16 8 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 9 C 0.23 11.23 2.29 44.19 0.10 11.33 16 10 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 11 C -0.12 -4.68 4.43 30.65 0.14 -4.54 16 12 C -0.04 -1.45 2.36 -11.46 -0.03 -1.48 16 13 H 0.07 2.58 6.31 -2.39 -0.02 2.56 16 14 C -0.12 -3.36 4.80 -19.75 -0.09 -3.45 16 15 C 0.11 2.99 9.86 84.67 0.83 3.83 16 16 N -0.50 -12.61 10.36 -195.91 -2.03 -14.64 16 17 C 0.10 1.94 11.18 84.65 0.95 2.88 16 18 C -0.16 -2.99 9.94 22.38 0.22 -2.77 16 19 C -0.01 -0.21 6.37 22.54 0.14 -0.06 16 20 Cl -0.05 -1.35 27.20 -2.72 -0.07 -1.42 16 21 C -0.13 -4.04 5.21 30.65 0.16 -3.88 16 22 C 0.06 2.24 6.55 86.33 0.57 2.80 16 23 N -0.67 -30.55 5.81 -495.57 -2.88 -33.43 16 24 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 25 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.06 2.15 7.35 -2.39 -0.02 2.14 16 27 H 0.16 4.28 7.09 -2.91 -0.02 4.26 16 28 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.07 1.97 7.33 -2.39 -0.02 1.95 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.32 14.26 8.79 -89.69 -0.79 13.47 16 Total: -1.00 -62.74 293.81 1.31 -61.43 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.32 Total: 16.59 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 3.67 Total: -22.93 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -4.63 Total: -99.38 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.42 kcal Total: -62.74 1.31 -61.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174180.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.515 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds