Wall clock time and date at job start Mon Mar 30 2020 08:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99872 * 2 1 4 4 H 1.48496 * 109.47337 * 269.99632 * 3 2 1 5 5 H 1.48496 * 109.46904 * 30.00177 * 3 2 1 6 6 H 1.48501 * 109.46546 * 150.00254 * 3 2 1 7 7 C 1.37884 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99562 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00094 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46812 * 60.02263 * 9 7 2 11 11 C 1.53037 * 109.46182 * 180.02562 * 9 7 2 12 12 C 1.53126 * 109.27880 * 60.82815 * 11 9 7 13 13 H 1.09006 * 109.51941 * 297.74603 * 12 11 9 14 14 C 1.50697 * 109.57228 * 177.59268 * 12 11 9 15 15 C 1.38169 * 120.42993 * 300.27848 * 14 12 11 16 16 N 1.31874 * 120.78002 * 179.97438 * 15 14 12 17 17 C 1.31910 * 121.75630 * 0.02562 * 16 15 14 18 18 C 1.38120 * 120.78267 * 359.97117 * 17 16 15 19 19 C 1.38777 * 120.42739 * 120.00579 * 14 12 11 20 20 Cl 1.73607 * 120.80298 * 359.97438 * 19 14 12 21 21 C 1.53114 * 109.16239 * 57.65311 * 12 11 9 22 22 C 1.53037 * 109.31211 * 302.32855 * 21 12 11 23 23 N 1.46850 * 109.45582 * 300.04901 * 9 7 2 24 24 H 0.97000 * 120.00213 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.50150 * 300.88586 * 11 9 7 26 26 H 1.09006 * 109.50306 * 180.76398 * 11 9 7 27 27 H 1.07994 * 119.60590 * 0.02562 * 15 14 12 28 28 H 1.08000 * 119.60832 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.42573 * 180.02562 * 18 17 16 30 30 H 1.09002 * 109.50377 * 62.28979 * 21 12 11 31 31 H 1.09003 * 109.50316 * 182.36975 * 21 12 11 32 32 H 1.08994 * 109.46612 * 179.21753 * 22 21 12 33 33 H 1.09007 * 109.46083 * 299.18512 * 22 21 12 34 34 H 1.00903 * 110.99884 * 65.83074 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6244 -2.5568 -0.8905 11 6 2.2457 -3.6622 -0.0005 12 6 3.1097 -3.5885 1.2615 13 1 3.6836 -2.6618 1.2564 14 6 4.0518 -4.7642 1.2977 15 6 3.5597 -6.0552 1.3077 16 7 4.3778 -7.0891 1.3388 17 6 5.6880 -6.9372 1.3620 18 6 6.2537 -5.6772 1.3538 19 6 5.4249 -4.5642 1.3157 20 17 6.0901 -2.9607 1.2965 21 6 2.2024 -3.6217 2.4944 22 6 1.2089 -2.4598 2.4231 23 7 0.4065 -2.5763 1.1983 24 1 -0.4850 0.8400 0.0004 25 1 2.8830 -3.5960 -0.8823 26 1 1.7014 -4.6066 -0.0142 27 1 2.4925 -6.2196 1.2890 28 1 6.3258 -7.8083 1.3876 29 1 7.3272 -5.5595 1.3725 30 1 1.6574 -4.5654 2.5200 31 1 2.8088 -3.5272 3.3952 32 1 0.5526 -2.4892 3.2928 33 1 1.7542 -1.5160 2.4115 34 1 -0.3197 -1.8762 1.1747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:44 Heat of formation + Delta-G solvation = 14.794294 kcal Electronic energy + Delta-G solvation = -18333.857951 eV Core-core repulsion = 15484.557438 eV Total energy + Delta-G solvation = -2849.300513 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.32275 -37.70436 -36.56312 -33.60529 -32.05470 -31.68079 -29.80915 -29.02639 -25.22076 -24.14224 -23.39259 -21.67382 -20.99995 -18.71072 -17.33021 -16.48579 -15.96212 -15.64487 -14.69919 -14.45360 -14.16859 -13.73284 -13.71174 -13.20505 -12.86715 -12.60810 -12.27594 -12.04532 -11.93182 -11.52564 -11.13992 -10.97191 -10.91272 -10.62149 -10.31843 -10.18216 -9.76840 -9.48817 -9.33387 -9.27006 -9.18647 -8.73882 -8.44320 -6.99061 -6.03968 -4.18828 1.09207 1.14723 2.10661 3.22752 3.30509 3.33596 3.76945 4.34836 4.44838 4.78211 4.84994 5.06019 5.16213 5.43082 5.53257 5.72951 5.73510 5.75972 5.93766 6.07230 6.24479 6.36240 6.49710 6.57922 6.63066 6.76792 6.87309 6.96583 7.07744 7.21964 7.65929 7.77942 7.95814 8.19457 8.65461 8.91109 9.09495 9.51310 10.93341 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.006934 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.138080 B = 4037.171976 C = 4792.399971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.206 3.794 10 H 0.041 0.959 11 C -0.089 4.089 12 C -0.049 4.049 13 H 0.097 0.903 14 C -0.101 4.101 15 C 0.115 3.885 16 N -0.482 5.482 17 C 0.092 3.908 18 C -0.167 4.167 19 C 0.001 3.999 20 Cl -0.048 7.048 21 C -0.096 4.096 22 C 0.069 3.931 23 N -0.689 5.689 24 H 0.264 0.736 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.165 0.835 28 H 0.159 0.841 29 H 0.140 0.860 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.417 -9.036 3.948 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.073 0.927 9 C 0.097 3.903 10 H 0.059 0.941 11 C -0.127 4.127 12 C -0.068 4.068 13 H 0.115 0.885 14 C -0.103 4.103 15 C -0.042 4.042 16 N -0.190 5.190 17 C -0.065 4.065 18 C -0.187 4.187 19 C -0.034 4.034 20 Cl -0.019 7.019 21 C -0.134 4.134 22 C -0.061 4.061 23 N -0.323 5.323 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.182 0.818 28 H 0.176 0.824 29 H 0.158 0.842 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.961 -10.306 3.960 14.220 hybrid contribution 1.298 3.024 -0.067 3.292 sum 10.259 -7.282 3.894 13.169 Atomic orbital electron populations 1.69716 1.05785 1.26951 1.51032 1.24981 0.94820 0.99048 0.94658 0.86681 0.80002 0.83699 0.78220 1.20615 1.21228 1.19951 1.21832 0.93536 0.91616 1.50627 0.92650 1.19042 0.90295 0.90571 0.90356 0.94099 1.21597 0.97055 0.99443 0.94571 1.20367 0.94691 0.94266 0.97430 0.88487 1.21289 0.93009 0.98321 0.97728 1.22749 1.00308 0.86593 0.94547 1.67673 1.04672 1.35056 1.11647 1.22658 0.91407 0.95888 0.96540 1.22036 1.01084 0.92330 1.03288 1.21329 0.93421 0.87189 1.01444 1.98397 1.84969 1.22068 1.96471 1.21537 0.96632 0.99829 0.95407 1.21525 0.94777 0.96390 0.93435 1.60951 1.15053 1.54829 1.01488 0.92632 0.93290 0.93591 0.81790 0.82379 0.84236 0.92387 0.93470 0.93782 0.94346 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 11.56 55.43 0.64 -23.64 16 2 C 0.07 1.76 5.38 -17.82 -0.10 1.67 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -13.85 6.47 -34.44 -0.22 -14.07 16 8 H 0.06 1.45 6.76 -52.49 -0.35 1.09 16 9 C 0.21 4.90 3.05 -68.88 -0.21 4.69 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.09 -1.78 4.71 -26.65 -0.13 -1.91 16 12 C -0.05 -0.89 2.10 -91.65 -0.19 -1.08 16 13 H 0.10 1.97 4.90 -51.93 -0.25 1.71 16 14 C -0.10 -1.61 4.80 -104.45 -0.50 -2.11 16 15 C 0.12 1.73 9.86 -17.56 -0.17 1.56 16 16 N -0.48 -6.94 10.36 -13.27 -0.14 -7.08 16 17 C 0.09 1.10 11.18 -17.56 -0.20 0.90 16 18 C -0.17 -2.03 9.94 -39.41 -0.39 -2.42 16 19 C 0.00 0.01 6.37 -39.17 -0.25 -0.24 16 20 Cl -0.05 -0.73 27.20 -51.86 -1.41 -2.14 16 21 C -0.10 -1.72 5.22 -26.65 -0.14 -1.86 16 22 C 0.07 1.43 6.31 -3.81 -0.02 1.41 16 23 N -0.69 -15.76 6.60 -107.96 -0.71 -16.47 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.86 7.33 -51.93 -0.38 0.48 16 27 H 0.17 2.33 7.09 -52.49 -0.37 1.95 16 28 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.06 0.98 7.35 -51.93 -0.38 0.60 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.89 6.99 -51.92 -0.36 0.53 16 34 H 0.36 8.89 6.95 -39.29 -0.27 8.62 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -26.95 286.32 -8.90 -35.85 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.05 Total: 6.80 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.52 Total: -13.45 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.21 Total: -47.18 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.41 Total: -2.14 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.95 -8.90 -35.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.646 kcal (2) G-P(sol) polarization free energy of solvation -26.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds