Wall clock time and date at job start Mon Mar 30 2020 08:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99872 * 2 1 4 4 H 1.48496 * 109.47337 * 269.99632 * 3 2 1 5 5 H 1.48496 * 109.46904 * 30.00177 * 3 2 1 6 6 H 1.48501 * 109.46546 * 150.00254 * 3 2 1 7 7 C 1.37884 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99562 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00094 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46812 * 60.02263 * 9 7 2 11 11 C 1.53037 * 109.46182 * 180.02562 * 9 7 2 12 12 C 1.53126 * 109.27880 * 60.82815 * 11 9 7 13 13 H 1.09006 * 109.51941 * 297.74603 * 12 11 9 14 14 C 1.50697 * 109.57228 * 177.59268 * 12 11 9 15 15 C 1.38169 * 120.42993 * 300.27848 * 14 12 11 16 16 N 1.31874 * 120.78002 * 179.97438 * 15 14 12 17 17 C 1.31910 * 121.75630 * 0.02562 * 16 15 14 18 18 C 1.38120 * 120.78267 * 359.97117 * 17 16 15 19 19 C 1.38777 * 120.42739 * 120.00579 * 14 12 11 20 20 Cl 1.73607 * 120.80298 * 359.97438 * 19 14 12 21 21 C 1.53114 * 109.16239 * 57.65311 * 12 11 9 22 22 C 1.53037 * 109.31211 * 302.32855 * 21 12 11 23 23 N 1.46850 * 109.45582 * 300.04901 * 9 7 2 24 24 H 0.97000 * 120.00213 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.50150 * 300.88586 * 11 9 7 26 26 H 1.09006 * 109.50306 * 180.76398 * 11 9 7 27 27 H 1.07994 * 119.60590 * 0.02562 * 15 14 12 28 28 H 1.08000 * 119.60832 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.42573 * 180.02562 * 18 17 16 30 30 H 1.09002 * 109.50377 * 62.28979 * 21 12 11 31 31 H 1.09003 * 109.50316 * 182.36975 * 21 12 11 32 32 H 1.08994 * 109.46612 * 179.21753 * 22 21 12 33 33 H 1.09007 * 109.46083 * 299.18512 * 22 21 12 34 34 H 1.00903 * 110.99884 * 65.83074 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6244 -2.5568 -0.8905 11 6 2.2457 -3.6622 -0.0005 12 6 3.1097 -3.5885 1.2615 13 1 3.6836 -2.6618 1.2564 14 6 4.0518 -4.7642 1.2977 15 6 3.5597 -6.0552 1.3077 16 7 4.3778 -7.0891 1.3388 17 6 5.6880 -6.9372 1.3620 18 6 6.2537 -5.6772 1.3538 19 6 5.4249 -4.5642 1.3157 20 17 6.0901 -2.9607 1.2965 21 6 2.2024 -3.6217 2.4944 22 6 1.2089 -2.4598 2.4231 23 7 0.4065 -2.5763 1.1983 24 1 -0.4850 0.8400 0.0004 25 1 2.8830 -3.5960 -0.8823 26 1 1.7014 -4.6066 -0.0142 27 1 2.4925 -6.2196 1.2890 28 1 6.3258 -7.8083 1.3876 29 1 7.3272 -5.5595 1.3725 30 1 1.6574 -4.5654 2.5200 31 1 2.8088 -3.5272 3.3952 32 1 0.5526 -2.4892 3.2928 33 1 1.7542 -1.5160 2.4115 34 1 -0.3197 -1.8762 1.1747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:42 Heat of formation + Delta-G solvation = -1.444229 kcal Electronic energy + Delta-G solvation = -18334.562106 eV Core-core repulsion = 15484.557438 eV Total energy + Delta-G solvation = -2850.004668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.45991 -39.29886 -37.70295 -35.23105 -33.70319 -32.84552 -31.55470 -30.39735 -27.16898 -25.42571 -24.53745 -23.32454 -22.43537 -20.41085 -18.38855 -18.02301 -17.52488 -17.24292 -16.45597 -15.84307 -15.30778 -15.08175 -14.90018 -14.80693 -14.54205 -14.10378 -13.81944 -13.44001 -13.20469 -13.18753 -12.88474 -12.80830 -12.43939 -12.31712 -12.03574 -11.60486 -11.35707 -11.21007 -10.96773 -10.50904 -10.47808 -10.38757 -9.87693 -8.91059 -8.04324 -6.26940 0.03227 0.07274 0.99035 1.33611 1.36997 1.44497 2.37824 2.71498 3.11334 3.43833 3.70303 3.74684 3.95572 4.04280 4.21936 4.30126 4.39807 4.57253 4.69587 4.74486 4.84511 4.90815 4.92134 5.01325 5.16587 5.28086 5.30594 5.39960 5.58135 5.59860 5.72843 5.75229 6.21330 6.72850 6.91879 6.94872 7.11407 7.45835 8.88933 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.006934 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.138080 B = 4037.171976 C = 4792.399971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.203 3.797 10 H 0.006 0.994 11 C -0.080 4.080 12 C -0.038 4.038 13 H 0.075 0.925 14 C -0.119 4.119 15 C 0.112 3.888 16 N -0.496 5.496 17 C 0.102 3.898 18 C -0.157 4.157 19 C -0.010 4.010 20 Cl -0.059 7.059 21 C -0.089 4.089 22 C 0.069 3.931 23 N -0.685 5.685 24 H 0.264 0.736 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.167 0.833 28 H 0.200 0.800 29 H 0.171 0.829 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.009 0.991 34 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.261 -10.538 4.713 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.175 4.175 3 Si 0.765 3.235 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.066 0.934 9 C 0.095 3.905 10 H 0.024 0.976 11 C -0.118 4.118 12 C -0.057 4.057 13 H 0.093 0.907 14 C -0.121 4.121 15 C -0.045 4.045 16 N -0.205 5.205 17 C -0.055 4.055 18 C -0.177 4.177 19 C -0.044 4.044 20 Cl -0.030 7.030 21 C -0.127 4.127 22 C -0.061 4.061 23 N -0.317 5.317 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.184 0.816 28 H 0.216 0.784 29 H 0.189 0.811 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.812 -11.818 4.727 16.701 hybrid contribution 0.773 3.418 -0.309 3.518 sum 11.585 -8.400 4.418 14.977 Atomic orbital electron populations 1.69816 1.06700 1.27424 1.51820 1.25589 0.95524 1.01680 0.94731 0.85852 0.78909 0.80618 0.78092 1.20424 1.20936 1.19861 1.22018 0.93252 0.92690 1.50029 0.93353 1.18986 0.90446 0.91558 0.89547 0.97569 1.21441 0.96458 0.98262 0.95632 1.20079 0.94602 0.94683 0.96328 0.90663 1.20996 0.93125 0.97635 1.00389 1.22753 1.00746 0.86311 0.94641 1.67741 1.05844 1.34684 1.12189 1.23365 0.90931 0.97186 0.94025 1.22390 1.02430 0.91358 1.01535 1.21537 0.93431 0.87542 1.01932 1.98394 1.84945 1.23075 1.96556 1.21484 0.96137 0.99002 0.96072 1.21604 0.95187 0.96389 0.92936 1.60969 1.14826 1.53885 1.02033 0.92703 0.94041 0.92320 0.81568 0.78363 0.81147 0.90972 0.91797 0.92168 0.97244 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.82 11.56 21.45 0.25 -50.57 16 2 C 0.02 1.30 5.38 84.66 0.46 1.76 16 3 Si 0.94 43.24 29.54 68.60 2.03 45.27 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.54 -28.52 6.47 25.60 0.17 -28.35 16 8 H 0.05 2.58 6.76 -2.91 -0.02 2.56 16 9 C 0.20 9.95 3.05 44.19 0.13 10.08 16 10 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 11 C -0.08 -3.23 4.71 30.65 0.14 -3.09 16 12 C -0.04 -1.36 2.10 -11.46 -0.02 -1.38 16 13 H 0.08 3.06 4.90 -2.38 -0.01 3.05 16 14 C -0.12 -3.61 4.80 -19.75 -0.09 -3.71 16 15 C 0.11 3.13 9.86 84.67 0.83 3.97 16 16 N -0.50 -12.77 10.36 -195.91 -2.03 -14.80 16 17 C 0.10 2.02 11.18 84.65 0.95 2.96 16 18 C -0.16 -3.25 9.94 22.38 0.22 -3.03 16 19 C -0.01 -0.27 6.37 22.54 0.14 -0.13 16 20 Cl -0.06 -1.72 27.20 -2.72 -0.07 -1.79 16 21 C -0.09 -3.09 5.22 30.64 0.16 -2.93 16 22 C 0.07 2.86 6.31 86.32 0.54 3.40 16 23 N -0.69 -31.85 6.60 -495.47 -3.27 -35.12 16 24 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 2.19 7.33 -2.38 -0.02 2.17 16 27 H 0.17 4.43 7.09 -2.91 -0.02 4.41 16 28 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.07 2.31 7.35 -2.39 -0.02 2.29 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.01 0.44 6.99 -2.38 -0.02 0.42 16 34 H 0.34 17.51 6.95 -89.69 -0.62 16.89 16 Total: -1.00 -58.42 286.32 1.03 -57.38 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.50 Total: 20.06 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 3.63 Total: -20.44 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -5.05 Total: -100.49 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -58.42 1.03 -57.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.940 kcal (2) G-P(sol) polarization free energy of solvation -58.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds