Wall clock time and date at job start Mon Mar 30 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38164 * 120.02161 * 2 1 4 4 C 1.38344 * 120.04429 * 179.97438 * 3 2 1 5 5 Cl 1.73600 * 119.96150 * 180.02562 * 4 3 2 6 6 C 1.38391 * 120.08254 * 0.04179 * 4 3 2 7 7 C 1.38121 * 120.04238 * 359.97438 * 6 4 3 8 8 C 1.50699 * 120.01949 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.47095 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47185 * 59.99425 * 8 7 6 11 11 H 1.07997 * 120.00297 * 275.55541 * 10 8 7 12 12 C 1.37885 * 119.99847 * 95.55953 * 10 8 7 13 13 N 1.31519 * 120.00099 * 6.22452 * 12 10 8 14 14 Si 1.86801 * 120.00026 * 186.22605 * 12 10 8 15 15 H 1.48502 * 109.46847 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47092 * 119.99512 * 14 12 10 17 17 H 1.48495 * 109.47190 * 239.99680 * 14 12 10 18 18 C 1.52999 * 109.47130 * 299.99712 * 8 7 6 19 19 C 1.53004 * 117.49821 * 254.00803 * 18 8 7 20 20 C 1.52998 * 117.50060 * 185.38374 * 18 8 7 21 21 C 1.38693 * 120.02284 * 179.72426 * 2 1 3 22 22 O 1.35924 * 120.03937 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47134 * 89.99838 * 1 2 3 24 24 H 1.09006 * 109.47329 * 329.99998 * 1 2 3 25 25 H 1.08996 * 109.47113 * 210.00129 * 1 2 3 26 26 H 1.08000 * 119.98073 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.97420 * 179.97438 * 6 4 3 28 28 H 0.96994 * 120.00120 * 180.02562 * 13 12 10 29 29 H 1.08996 * 115.55300 * 39.70960 * 18 8 7 30 30 H 1.09003 * 117.49568 * 359.97438 * 19 18 8 31 31 H 1.08997 * 117.50177 * 145.02222 * 19 18 8 32 32 H 1.08996 * 117.50486 * 214.97630 * 20 18 8 33 33 H 1.09004 * 117.49818 * 359.97438 * 20 18 8 34 34 H 0.96704 * 114.00292 * 90.00582 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5817 1.1968 0.0005 5 17 4.4481 2.7012 0.0012 6 6 4.2758 -0.0004 0.0002 7 6 3.5883 -1.1983 -0.0001 8 6 4.3447 -2.5017 -0.0011 9 1 3.6383 -3.3318 -0.0008 10 6 5.2119 -2.5802 1.2289 11 1 6.1899 -2.1221 1.2303 12 6 4.7567 -3.2370 2.3526 13 7 3.6209 -3.8988 2.3125 14 14 5.7532 -3.1868 3.9318 15 1 6.9819 -2.3811 3.7162 16 1 4.9403 -2.5698 5.0106 17 1 6.1292 -4.5687 4.3240 18 6 5.2240 -2.5802 -1.2507 19 6 4.7756 -3.5195 -2.3722 20 6 5.9794 -3.8868 -1.5022 21 6 2.2009 -1.2008 0.0058 22 8 1.5226 -2.3787 0.0109 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 0.8900 0.5139 25 1 -0.3633 -0.8899 0.5138 26 1 1.6583 2.1316 -0.0004 27 1 5.3559 0.0021 0.0002 28 1 3.3005 -4.3606 3.1031 29 1 5.7159 -1.6512 -1.5386 30 1 3.8543 -4.0818 -2.2195 31 1 4.9723 -3.2084 -3.3981 32 1 6.9680 -3.8173 -1.9557 33 1 5.8503 -4.6903 -0.7770 34 1 1.3267 -2.7237 -0.8710 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:31 Heat of formation + Delta-G solvation = -31.822306 kcal Electronic energy + Delta-G solvation = -18210.011083 eV Core-core repulsion = 15326.396371 eV Total energy + Delta-G solvation = -2883.614712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94120 -38.26139 -37.88863 -36.75031 -34.96543 -33.62213 -31.36315 -28.81154 -27.63759 -25.60636 -23.03815 -22.75585 -22.49974 -20.51137 -19.08718 -18.31730 -17.17920 -16.89896 -16.60104 -16.15350 -15.69199 -14.91546 -14.66306 -14.29221 -14.09402 -13.75712 -13.55477 -13.33480 -13.15522 -13.02721 -12.88708 -12.48104 -12.45174 -12.21672 -12.02529 -11.82856 -11.58223 -11.25876 -11.06144 -10.94314 -10.46047 -10.35865 -9.40502 -9.11631 -8.06627 -6.14338 0.30684 0.52847 1.24642 1.36216 1.40180 1.49116 2.41727 2.74246 3.18594 3.29568 3.55191 3.94805 4.02543 4.22448 4.31204 4.41200 4.45574 4.59004 4.75433 4.85744 4.86632 4.92878 4.97547 5.13166 5.21359 5.26759 5.40491 5.46575 5.47636 5.51941 5.72542 5.82693 5.98513 6.04915 6.39044 6.97699 7.10472 7.48920 8.97741 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.007950 C = 0.007565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.687240 B = 3521.044364 C = 3700.580389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.109 4.109 3 C -0.124 4.124 4 C -0.046 4.046 5 Cl -0.076 7.076 6 C -0.111 4.111 7 C -0.055 4.055 8 C 0.096 3.904 9 H 0.055 0.945 10 C -0.508 4.508 11 H 0.047 0.953 12 C 0.022 3.978 13 N -0.899 5.899 14 Si 0.934 3.066 15 H -0.267 1.267 16 H -0.288 1.288 17 H -0.280 1.280 18 C -0.140 4.140 19 C -0.176 4.176 20 C -0.172 4.172 21 C 0.089 3.911 22 O -0.488 6.488 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.153 0.847 27 H 0.120 0.880 28 H 0.257 0.743 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.743 7.675 -8.260 11.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 C -0.142 4.142 4 C -0.072 4.072 5 Cl -0.047 7.047 6 C -0.130 4.130 7 C -0.056 4.056 8 C 0.078 3.922 9 H 0.073 0.927 10 C -0.546 4.546 11 H 0.065 0.935 12 C -0.178 4.178 13 N -0.537 5.537 14 Si 0.761 3.239 15 H -0.192 1.192 16 H -0.214 1.214 17 H -0.206 1.206 18 C -0.158 4.158 19 C -0.212 4.212 20 C -0.210 4.210 21 C 0.044 3.956 22 O -0.298 6.298 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.171 0.829 27 H 0.138 0.862 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.752 7.743 -7.535 11.436 hybrid contribution 0.767 -0.222 0.808 1.136 sum -2.985 7.520 -6.727 10.522 Atomic orbital electron populations 1.20652 0.88372 1.03258 1.03383 1.20381 0.98124 0.91375 1.01151 1.20813 0.91298 0.98572 1.03527 1.20926 0.92802 0.86432 1.07040 1.98312 1.77201 1.32023 1.97160 1.20702 1.00057 0.90209 1.02064 1.20973 0.93460 0.97139 0.94051 1.17437 0.93114 0.90706 0.90957 0.92701 1.21139 1.01439 1.34084 0.97915 0.93451 1.25599 0.95989 0.94963 1.01262 1.70079 1.21536 1.32836 1.29270 0.85868 0.79311 0.77768 0.80954 1.19171 1.21416 1.20601 1.22397 1.02809 0.93697 0.96942 1.23021 0.98427 1.03897 0.95895 1.22692 0.96257 0.99429 1.02574 1.18443 0.89579 0.85632 1.01936 1.84924 1.75628 1.36018 1.33251 0.89344 0.90069 0.91955 0.82944 0.86231 0.93403 0.89372 0.89848 0.87520 0.88236 0.91194 0.75412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.79 71.24 0.70 -1.82 16 2 C -0.11 -3.64 5.89 -19.77 -0.12 -3.75 16 3 C -0.12 -3.88 9.48 22.28 0.21 -3.67 16 4 C -0.05 -1.58 6.32 22.33 0.14 -1.44 16 5 Cl -0.08 -2.26 28.95 -2.72 -0.08 -2.34 16 6 C -0.11 -4.48 8.44 22.28 0.19 -4.29 16 7 C -0.05 -2.39 4.78 -19.77 -0.09 -2.48 16 8 C 0.10 4.56 2.20 -12.29 -0.03 4.53 16 9 H 0.05 2.90 5.87 -2.39 -0.01 2.89 16 10 C -0.51 -27.14 7.71 25.60 0.20 -26.94 16 11 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 12 C 0.02 1.24 5.45 84.66 0.46 1.70 16 13 N -0.90 -52.03 12.76 21.45 0.27 -51.75 16 14 Si 0.93 44.33 29.54 68.60 2.03 46.36 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 C -0.14 -5.59 4.93 -10.79 -0.05 -5.64 16 19 C -0.18 -5.84 10.18 30.60 0.31 -5.53 16 20 C -0.17 -6.40 10.01 30.60 0.31 -6.09 16 21 C 0.09 3.57 6.65 22.50 0.15 3.72 16 22 O -0.49 -19.40 11.31 -92.69 -1.05 -20.45 16 23 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.08 1.71 8.09 -2.38 -0.02 1.69 16 25 H 0.06 1.72 7.52 -2.39 -0.02 1.71 16 26 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 27 H 0.12 4.88 7.80 -2.91 -0.02 4.85 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.09 3.38 7.42 -2.39 -0.02 3.36 16 30 H 0.08 2.82 8.08 -2.39 -0.02 2.80 16 31 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.39 11.58 9.06 -74.05 -0.67 10.91 16 Total: -1.00 -61.96 306.33 3.99 -57.97 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.44 Total: 21.92 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 2.37 Total: -51.71 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.27 Total: -51.75 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.05 Total: -20.45 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.34 kcal Total: -61.96 3.99 -57.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.150 kcal (2) G-P(sol) polarization free energy of solvation -61.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds