Wall clock time and date at job start Mon Mar 30 2020 07:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38166 * 120.02454 * 2 1 4 4 C 1.38346 * 120.04546 * 179.97438 * 3 2 1 5 5 Cl 1.73595 * 119.95475 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.08134 * 0.04310 * 4 3 2 7 7 C 1.38116 * 120.04840 * 359.97438 * 6 4 3 8 8 C 1.50700 * 120.02430 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.47099 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47233 * 300.00061 * 8 7 6 11 11 H 1.08007 * 120.00035 * 64.89124 * 10 8 7 12 12 C 1.37878 * 120.00118 * 244.89502 * 10 8 7 13 13 N 1.31510 * 119.99957 * 184.75460 * 12 10 8 14 14 Si 1.86798 * 119.99786 * 4.75814 * 12 10 8 15 15 H 1.48504 * 109.47208 * 84.59250 * 14 12 10 16 16 H 1.48501 * 109.47216 * 204.59159 * 14 12 10 17 17 H 1.48496 * 109.47221 * 324.59387 * 14 12 10 18 18 C 1.52996 * 109.46814 * 60.00100 * 8 7 6 19 19 C 1.52999 * 117.50130 * 123.88107 * 18 8 7 20 20 C 1.52997 * 117.50193 * 55.25665 * 18 8 7 21 21 C 1.38705 * 120.01905 * 179.72699 * 2 1 3 22 22 O 1.35917 * 120.04223 * 0.02562 * 21 2 1 23 23 H 1.08991 * 109.47255 * 89.99553 * 1 2 3 24 24 H 1.09006 * 109.47079 * 329.99638 * 1 2 3 25 25 H 1.09001 * 109.47304 * 210.00153 * 1 2 3 26 26 H 1.08004 * 119.97587 * 359.97438 * 3 2 1 27 27 H 1.08003 * 119.97465 * 179.97438 * 6 4 3 28 28 H 0.97005 * 119.99794 * 180.02562 * 13 12 10 29 29 H 1.09008 * 115.55140 * 269.58728 * 18 8 7 30 30 H 1.09005 * 117.49713 * 359.97438 * 19 18 8 31 31 H 1.08998 * 117.50300 * 145.01352 * 19 18 8 32 32 H 1.08999 * 117.50348 * 214.97986 * 20 18 8 33 33 H 1.08999 * 117.49729 * 359.97438 * 20 18 8 34 34 H 0.96700 * 114.00017 * 90.00818 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5818 1.1968 0.0005 5 17 4.4480 2.7011 0.0012 6 6 4.2758 -0.0004 0.0002 7 6 3.5884 -1.1984 -0.0002 8 6 4.3448 -2.5018 -0.0012 9 1 3.6383 -3.3318 -0.0009 10 6 5.2109 -2.5791 -1.2319 11 1 6.0252 -1.8819 -1.3639 12 6 4.9637 -3.5397 -2.1896 13 7 5.7747 -3.6680 -3.2169 14 14 3.4769 -4.6589 -2.0279 15 1 2.2827 -3.9802 -2.5923 16 1 3.7250 -5.9217 -2.7689 17 1 3.2410 -4.9645 -0.5940 18 6 5.2250 -2.5815 1.2477 19 6 5.0366 -3.7884 2.1689 20 6 4.5420 -2.4081 2.6057 21 6 2.2009 -1.2010 0.0057 22 8 1.5226 -2.3788 0.0108 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 0.8900 0.5139 25 1 -0.3634 -0.8900 0.5139 26 1 1.6583 2.1316 -0.0004 27 1 5.3559 0.0020 0.0002 28 1 5.6006 -4.3436 -3.8909 29 1 6.2343 -2.1846 1.1377 30 1 4.2853 -4.5255 1.8855 31 1 5.9220 -4.1860 2.6650 32 1 5.1019 -1.8975 3.3892 33 1 3.4655 -2.2368 2.6094 34 1 1.3267 -2.7237 -0.8711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:34 Heat of formation + Delta-G solvation = -14.765090 kcal Electronic energy + Delta-G solvation = -18333.671140 eV Core-core repulsion = 15450.796085 eV Total energy + Delta-G solvation = -2882.875055 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.76941 -36.89618 -36.69320 -35.54427 -33.28460 -32.19425 -30.20315 -27.71433 -26.52222 -23.41750 -21.76822 -21.46270 -21.35223 -18.78757 -17.94380 -17.13621 -15.79409 -15.67245 -15.03857 -14.75937 -14.03764 -13.64877 -13.38320 -13.11842 -12.83515 -12.53174 -12.47712 -12.14986 -12.09331 -11.46605 -11.28270 -11.03937 -10.98258 -10.83497 -10.64469 -10.31670 -10.11289 -9.82861 -9.68880 -9.14041 -8.97932 -8.67988 -8.11351 -7.87333 -6.21447 -4.21183 1.54221 1.79077 2.51310 3.10812 3.25736 3.26731 3.96433 4.26760 4.54343 4.70644 5.08617 5.10070 5.29314 5.46352 5.54816 5.69138 5.74756 5.77273 5.84833 5.90417 6.08957 6.16729 6.21397 6.36016 6.44114 6.57418 6.64934 6.73996 6.75892 6.85250 7.07938 7.20391 7.30238 7.59034 8.04776 8.37366 8.83352 9.39130 10.90976 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.008139 C = 0.007699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.945892 B = 3439.537573 C = 3636.063959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C -0.126 4.126 4 C -0.036 4.036 5 Cl -0.088 7.088 6 C -0.085 4.085 7 C -0.031 4.031 8 C 0.063 3.937 9 H 0.065 0.935 10 C -0.501 4.501 11 H 0.078 0.922 12 C 0.074 3.926 13 N -0.891 5.891 14 Si 0.870 3.130 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.255 1.255 18 C -0.111 4.111 19 C -0.184 4.184 20 C -0.197 4.197 21 C 0.087 3.913 22 O -0.493 6.493 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.266 0.734 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 6.217 6.833 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.145 4.145 4 C -0.063 4.063 5 Cl -0.060 7.060 6 C -0.104 4.104 7 C -0.033 4.033 8 C 0.044 3.956 9 H 0.083 0.917 10 C -0.539 4.539 11 H 0.096 0.904 12 C -0.129 4.129 13 N -0.528 5.528 14 Si 0.698 3.302 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.180 1.180 18 C -0.130 4.130 19 C -0.221 4.221 20 C -0.234 4.234 21 C 0.042 3.958 22 O -0.303 6.303 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.143 0.857 27 H 0.152 0.848 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.650 6.291 7.254 12.277 hybrid contribution -0.620 -0.531 -0.679 1.062 sum -8.270 5.760 6.575 12.034 Atomic orbital electron populations 1.20629 0.90887 1.02771 1.02039 1.19968 0.96236 0.92052 1.02191 1.20499 0.91740 0.97570 1.04727 1.20880 0.92119 0.86554 1.06711 1.98324 1.77318 1.33164 1.97168 1.20747 1.00712 0.89281 0.99652 1.20883 0.92138 0.97565 0.92670 1.18069 0.93827 0.90278 0.93427 0.91729 1.20884 1.14483 1.16762 1.01738 0.90379 1.25099 0.96093 0.96679 0.95053 1.69882 1.36626 1.34396 1.11897 0.86984 0.83493 0.80849 0.78847 1.20269 1.21399 1.18012 1.22572 1.00194 1.00219 0.90013 1.22872 1.02535 0.91535 1.05125 1.22916 1.00500 1.00312 0.99692 1.18260 0.89683 0.84595 1.03244 1.84751 1.76167 1.36227 1.33152 0.91571 0.91830 0.90954 0.85688 0.84833 0.92410 0.88403 0.89581 0.89827 0.90108 0.89559 0.76326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.79 36.00 0.35 -1.00 16 2 C -0.10 -1.68 5.89 -104.48 -0.62 -2.30 16 3 C -0.13 -2.00 9.48 -39.57 -0.38 -2.37 16 4 C -0.04 -0.62 6.32 -39.49 -0.25 -0.87 16 5 Cl -0.09 -1.35 28.95 -51.86 -1.50 -2.86 16 6 C -0.09 -1.65 8.71 -39.57 -0.34 -1.99 16 7 C -0.03 -0.64 4.22 -104.48 -0.44 -1.08 16 8 C 0.06 1.40 2.04 -92.93 -0.19 1.21 16 9 H 0.06 1.48 3.06 -51.93 -0.16 1.32 16 10 C -0.50 -13.13 8.44 -34.44 -0.29 -13.42 16 11 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 14 Si 0.87 20.04 26.55 -169.99 -4.51 15.53 16 15 H -0.28 -5.95 6.93 56.52 0.39 -5.56 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.26 -5.67 6.21 56.52 0.35 -5.32 16 18 C -0.11 -2.24 4.86 -90.62 -0.44 -2.68 16 19 C -0.18 -3.34 10.18 -26.73 -0.27 -3.61 16 20 C -0.20 -3.46 9.78 -26.73 -0.26 -3.72 16 21 C 0.09 1.62 6.65 -39.22 -0.26 1.36 16 22 O -0.49 -8.85 11.31 -19.48 -0.22 -9.07 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.68 8.09 -51.93 -0.42 0.27 16 25 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 26 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 27 H 0.13 2.62 8.05 -52.48 -0.42 2.20 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.10 1.99 8.07 -51.92 -0.42 1.57 16 30 H 0.09 1.61 8.03 -51.93 -0.42 1.19 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.57 8.02 -51.93 -0.42 1.15 16 34 H 0.38 6.08 8.02 45.56 0.37 6.44 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -28.07 300.57 -8.01 -36.07 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.59 Total: 9.57 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -3.49 Total: -28.57 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.77 Total: -25.21 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.22 Total: -9.07 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.51 Total: 15.53 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.50 Total: -2.86 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.07 -8.01 -36.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.308 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds