Wall clock time and date at job start Mon Mar 30 2020 07:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38166 * 120.02454 * 2 1 4 4 C 1.38346 * 120.04546 * 179.97438 * 3 2 1 5 5 Cl 1.73595 * 119.95475 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.08134 * 0.04310 * 4 3 2 7 7 C 1.38116 * 120.04840 * 359.97438 * 6 4 3 8 8 C 1.50700 * 120.02430 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.47099 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47233 * 300.00061 * 8 7 6 11 11 H 1.08007 * 120.00035 * 64.89124 * 10 8 7 12 12 C 1.37878 * 120.00118 * 244.89502 * 10 8 7 13 13 N 1.31510 * 119.99957 * 184.75460 * 12 10 8 14 14 Si 1.86798 * 119.99786 * 4.75814 * 12 10 8 15 15 H 1.48504 * 109.47208 * 84.59250 * 14 12 10 16 16 H 1.48501 * 109.47216 * 204.59159 * 14 12 10 17 17 H 1.48496 * 109.47221 * 324.59387 * 14 12 10 18 18 C 1.52996 * 109.46814 * 60.00100 * 8 7 6 19 19 C 1.52999 * 117.50130 * 123.88107 * 18 8 7 20 20 C 1.52997 * 117.50193 * 55.25665 * 18 8 7 21 21 C 1.38705 * 120.01905 * 179.72699 * 2 1 3 22 22 O 1.35917 * 120.04223 * 0.02562 * 21 2 1 23 23 H 1.08991 * 109.47255 * 89.99553 * 1 2 3 24 24 H 1.09006 * 109.47079 * 329.99638 * 1 2 3 25 25 H 1.09001 * 109.47304 * 210.00153 * 1 2 3 26 26 H 1.08004 * 119.97587 * 359.97438 * 3 2 1 27 27 H 1.08003 * 119.97465 * 179.97438 * 6 4 3 28 28 H 0.97005 * 119.99794 * 180.02562 * 13 12 10 29 29 H 1.09008 * 115.55140 * 269.58728 * 18 8 7 30 30 H 1.09005 * 117.49713 * 359.97438 * 19 18 8 31 31 H 1.08998 * 117.50300 * 145.01352 * 19 18 8 32 32 H 1.08999 * 117.50348 * 214.97986 * 20 18 8 33 33 H 1.08999 * 117.49729 * 359.97438 * 20 18 8 34 34 H 0.96700 * 114.00017 * 90.00818 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5818 1.1968 0.0005 5 17 4.4480 2.7011 0.0012 6 6 4.2758 -0.0004 0.0002 7 6 3.5884 -1.1984 -0.0002 8 6 4.3448 -2.5018 -0.0012 9 1 3.6383 -3.3318 -0.0009 10 6 5.2109 -2.5791 -1.2319 11 1 6.0252 -1.8819 -1.3639 12 6 4.9637 -3.5397 -2.1896 13 7 5.7747 -3.6680 -3.2169 14 14 3.4769 -4.6589 -2.0279 15 1 2.2827 -3.9802 -2.5923 16 1 3.7250 -5.9217 -2.7689 17 1 3.2410 -4.9645 -0.5940 18 6 5.2250 -2.5815 1.2477 19 6 5.0366 -3.7884 2.1689 20 6 4.5420 -2.4081 2.6057 21 6 2.2009 -1.2010 0.0057 22 8 1.5226 -2.3788 0.0108 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 0.8900 0.5139 25 1 -0.3634 -0.8900 0.5139 26 1 1.6583 2.1316 -0.0004 27 1 5.3559 0.0020 0.0002 28 1 5.6006 -4.3436 -3.8909 29 1 6.2343 -2.1846 1.1377 30 1 4.2853 -4.5255 1.8855 31 1 5.9220 -4.1860 2.6650 32 1 5.1019 -1.8975 3.3892 33 1 3.4655 -2.2368 2.6094 34 1 1.3267 -2.7237 -0.8711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:34 Heat of formation + Delta-G solvation = -30.596153 kcal Electronic energy + Delta-G solvation = -18334.357627 eV Core-core repulsion = 15450.796085 eV Total energy + Delta-G solvation = -2883.561542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17034 -38.40736 -38.02654 -36.86519 -35.03653 -33.79406 -31.68226 -29.35019 -27.72481 -25.24414 -23.21847 -22.84348 -22.77404 -20.36953 -19.43410 -18.95901 -17.16479 -17.10127 -16.73928 -16.16229 -15.66042 -15.15705 -14.86477 -14.53871 -14.30095 -14.04859 -13.68678 -13.50149 -13.35313 -12.99505 -12.80997 -12.67824 -12.47482 -12.27991 -11.96544 -11.80605 -11.67383 -11.51671 -11.34194 -10.86764 -10.68362 -10.50232 -9.49883 -9.27124 -8.29157 -6.33118 0.16210 0.42012 1.18991 1.27976 1.37129 1.46304 2.33065 2.57640 2.95757 3.18778 3.37211 3.84074 3.94752 4.07448 4.20001 4.26472 4.34841 4.48767 4.56223 4.80225 4.80654 4.84088 4.86129 4.96262 5.02966 5.16009 5.28734 5.32938 5.33177 5.43953 5.53462 5.58159 5.72534 5.81674 6.32630 6.70364 6.74171 7.30913 8.87042 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.008139 C = 0.007699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.945892 B = 3439.537573 C = 3636.063959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.040 4.040 5 Cl -0.073 7.073 6 C -0.103 4.103 7 C -0.056 4.056 8 C 0.069 3.931 9 H 0.061 0.939 10 C -0.498 4.498 11 H 0.033 0.967 12 C 0.013 3.987 13 N -0.946 5.946 14 Si 0.931 3.069 15 H -0.249 1.249 16 H -0.294 1.294 17 H -0.241 1.241 18 C -0.141 4.141 19 C -0.179 4.179 20 C -0.170 4.170 21 C 0.076 3.924 22 O -0.496 6.496 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.158 0.842 27 H 0.114 0.886 28 H 0.265 0.735 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 6.965 8.349 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C -0.136 4.136 4 C -0.067 4.067 5 Cl -0.044 7.044 6 C -0.122 4.122 7 C -0.057 4.057 8 C 0.051 3.949 9 H 0.079 0.921 10 C -0.536 4.536 11 H 0.052 0.948 12 C -0.185 4.185 13 N -0.586 5.586 14 Si 0.755 3.245 15 H -0.173 1.173 16 H -0.221 1.221 17 H -0.165 1.165 18 C -0.160 4.160 19 C -0.216 4.216 20 C -0.207 4.207 21 C 0.031 3.969 22 O -0.307 6.307 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.176 0.824 27 H 0.132 0.868 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.657 7.060 8.792 15.516 hybrid contribution 0.380 -0.614 -1.103 1.319 sum -10.278 6.446 7.689 14.363 Atomic orbital electron populations 1.20718 0.87866 1.04084 1.03384 1.20358 0.98317 0.90989 1.00149 1.20899 0.91033 0.98922 1.02701 1.20969 0.92988 0.86490 1.06249 1.98327 1.77253 1.31778 1.97064 1.20638 0.99972 0.90337 1.01277 1.20698 0.93201 0.96701 0.95131 1.17876 0.93330 0.91462 0.92258 0.92102 1.21054 1.13827 1.15291 1.03382 0.94819 1.25967 0.99267 0.98594 0.94645 1.70051 1.39186 1.35952 1.13402 0.86007 0.80516 0.78427 0.79550 1.17324 1.22071 1.16533 1.22379 0.99683 1.03059 0.90861 1.22983 1.03228 0.91392 1.04003 1.22892 1.00288 0.99620 0.97911 1.18388 0.89093 0.85796 1.03597 1.84722 1.75834 1.36192 1.33937 0.90045 0.89350 0.90877 0.82410 0.86791 0.92581 0.89854 0.89925 0.87853 0.87897 0.89799 0.75373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.16 9.79 71.24 0.70 -1.47 16 2 C -0.10 -2.84 5.89 -19.77 -0.12 -2.95 16 3 C -0.12 -3.32 9.48 22.28 0.21 -3.11 16 4 C -0.04 -1.34 6.32 22.33 0.14 -1.20 16 5 Cl -0.07 -2.14 28.95 -2.72 -0.08 -2.22 16 6 C -0.10 -4.05 8.71 22.28 0.19 -3.85 16 7 C -0.06 -2.28 4.22 -19.77 -0.08 -2.36 16 8 C 0.07 3.13 2.04 -12.29 -0.03 3.10 16 9 H 0.06 2.74 3.06 -2.39 -0.01 2.73 16 10 C -0.50 -27.33 8.44 25.60 0.22 -27.12 16 11 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 12 C 0.01 0.70 5.47 84.66 0.46 1.17 16 13 N -0.95 -57.78 13.96 21.45 0.30 -57.48 16 14 Si 0.93 41.49 26.55 68.60 1.82 43.31 16 15 H -0.25 -9.87 6.93 99.48 0.69 -9.18 16 16 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 17 H -0.24 -10.10 6.21 99.48 0.62 -9.48 16 18 C -0.14 -5.74 4.86 -10.80 -0.05 -5.79 16 19 C -0.18 -6.26 10.18 30.59 0.31 -5.95 16 20 C -0.17 -5.69 9.78 30.59 0.30 -5.39 16 21 C 0.08 2.69 6.65 22.50 0.15 2.84 16 22 O -0.50 -16.55 11.31 -92.61 -1.05 -17.60 16 23 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.43 8.09 -2.38 -0.02 1.41 16 25 H 0.07 1.55 7.52 -2.39 -0.02 1.53 16 26 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 27 H 0.11 4.77 8.05 -2.91 -0.02 4.75 16 28 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 29 H 0.08 3.56 8.07 -2.38 -0.02 3.54 16 30 H 0.08 2.95 8.03 -2.38 -0.02 2.93 16 31 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.10 2.97 8.14 -2.39 -0.02 2.96 16 33 H 0.08 2.87 8.02 -2.39 -0.02 2.85 16 34 H 0.39 11.33 8.02 -74.06 -0.59 10.73 16 Total: -1.00 -63.18 300.57 3.82 -59.36 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.42 Total: 26.69 kcal Atomic # 6 Polarization: -54.48 SS G_CDS: 2.41 Total: -52.08 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.30 Total: -57.48 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.05 Total: -17.60 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.82 Total: 43.31 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.08 Total: -2.22 kcal Total: -63.18 3.82 -59.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.761 kcal (2) G-P(sol) polarization free energy of solvation -63.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds