Wall clock time and date at job start Mon Mar 30 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48505 * 109.47085 * 269.99912 * 3 2 1 5 5 H 1.48503 * 109.47000 * 29.99348 * 3 2 1 6 6 H 1.48494 * 109.47286 * 149.99474 * 3 2 1 7 7 C 1.37878 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99928 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00239 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47496 * 180.02562 * 9 7 2 11 11 C 1.37898 * 120.13721 * 99.97922 * 10 9 7 12 12 C 1.38906 * 120.65193 * 180.02562 * 11 10 9 13 13 C 1.37760 * 119.76569 * 359.82234 * 12 11 10 14 14 C 1.38875 * 119.73076 * 0.28475 * 13 12 11 15 15 Cl 1.73597 * 119.75947 * 179.82080 * 14 13 12 16 16 C 1.38576 * 120.48004 * 359.80193 * 14 13 12 17 17 O 1.35923 * 120.17711 * 179.97438 * 16 14 13 18 18 C 1.50639 * 122.56582 * 180.40188 * 13 12 11 19 19 C 1.52718 * 110.60657 * 342.39089 * 18 13 12 20 20 C 1.53333 * 108.37556 * 51.06385 * 19 18 13 21 21 C 1.50653 * 117.69821 * 179.78105 * 12 11 10 22 22 H 0.96993 * 120.00196 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46900 * 59.99961 * 9 7 2 24 24 H 1.08998 * 109.47282 * 300.00649 * 9 7 2 25 25 H 1.08010 * 119.67523 * 0.02562 * 11 10 9 26 26 H 0.96696 * 114.00673 * 89.99795 * 17 16 14 27 27 H 1.08999 * 109.25434 * 102.64958 * 18 13 12 28 28 H 1.09000 * 109.25580 * 222.08086 * 18 13 12 29 29 H 1.08996 * 109.65657 * 291.36490 * 19 18 13 30 30 H 1.09001 * 109.71441 * 170.79870 * 19 18 13 31 31 H 1.09002 * 109.68234 * 170.37030 * 20 19 18 32 32 H 1.08999 * 109.67862 * 49.85600 * 20 19 18 33 33 H 1.09005 * 109.24875 * 42.19571 * 21 12 11 34 34 H 1.09000 * 109.24720 * 282.77878 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0010 11 6 4.4401 -3.1984 -1.1735 12 6 4.9047 -4.5074 -1.1860 13 6 4.9444 -5.2302 -0.0139 14 6 4.5139 -4.6463 1.1703 15 17 4.5593 -5.5581 2.6468 16 6 4.0488 -3.3410 1.1818 17 8 3.6284 -2.7758 2.3443 18 6 5.4443 -6.6500 0.0466 19 6 5.4642 -7.2727 -1.3478 20 6 6.2111 -6.3222 -2.2910 21 6 5.3489 -5.0802 -2.5067 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8912 24 1 3.8753 -0.6803 -0.8888 25 1 4.4123 -2.6321 -2.0928 26 1 4.3263 -2.3215 2.8358 27 1 6.4537 -6.6584 0.4578 28 1 4.7890 -7.2346 0.6922 29 1 4.4428 -7.4129 -1.7013 30 1 5.9769 -8.2340 -1.3138 31 1 6.3879 -6.8167 -3.2462 32 1 7.1632 -6.0351 -1.8446 33 1 5.9271 -4.3307 -3.0472 34 1 4.4716 -5.3493 -3.0949 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260182225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:06 Heat of formation + Delta-G solvation = -51.151696 kcal Electronic energy + Delta-G solvation = -17934.181753 eV Core-core repulsion = 15049.728856 eV Total energy + Delta-G solvation = -2884.452897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02992 -37.56188 -36.21179 -35.01111 -33.08327 -32.02531 -30.80958 -28.28739 -27.32479 -23.65234 -22.85336 -21.99292 -21.09625 -19.11382 -17.41496 -16.75998 -16.25570 -15.50034 -14.88016 -14.66109 -14.24051 -13.85062 -13.80218 -13.29493 -12.74007 -12.65055 -12.58971 -12.10996 -11.91877 -11.76099 -11.63404 -11.07657 -10.84106 -10.73313 -10.67372 -10.50308 -10.49963 -10.25249 -9.94750 -9.69052 -9.33585 -8.56187 -8.07183 -7.80159 -6.04264 -4.02460 1.51921 1.68633 2.47978 3.27843 3.35965 3.37144 3.92522 4.42043 4.53397 4.74826 4.86533 4.89520 5.20048 5.25782 5.29032 5.51367 5.55604 5.56970 5.62169 5.82962 5.94539 5.97154 6.00225 6.02871 6.10460 6.30011 6.41354 6.57892 6.64601 6.87639 6.92319 7.20498 7.33495 7.68376 8.19084 8.51768 9.01530 9.54842 11.09132 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.006260 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.425561 B = 4472.053771 C = 5291.556345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.025 3.975 10 C -0.046 4.046 11 C -0.108 4.108 12 C -0.078 4.078 13 C -0.081 4.081 14 C -0.065 4.065 15 Cl -0.076 7.076 16 C 0.118 3.882 17 O -0.469 6.469 18 C -0.076 4.076 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.076 4.076 22 H 0.264 0.736 23 H 0.030 0.970 24 H 0.024 0.976 25 H 0.127 0.873 26 H 0.379 0.621 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.331 -11.434 -1.516 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.540 4.540 8 H 0.091 0.909 9 C -0.012 4.012 10 C -0.047 4.047 11 C -0.127 4.127 12 C -0.078 4.078 13 C -0.081 4.081 14 C -0.092 4.092 15 Cl -0.047 7.047 16 C 0.072 3.928 17 O -0.277 6.277 18 C -0.113 4.113 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.113 4.113 22 H 0.073 0.927 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.145 0.855 26 H 0.234 0.766 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.615 -11.621 -1.532 17.966 hybrid contribution 0.597 1.127 0.390 1.334 sum 14.212 -10.494 -1.142 17.703 Atomic orbital electron populations 1.69895 1.06218 1.26845 1.50879 1.24963 0.94720 0.98840 0.94685 0.86822 0.80339 0.83896 0.78475 1.20264 1.21234 1.19098 1.20815 0.87836 0.94665 1.50709 0.90914 1.18673 0.97840 0.87461 0.97275 1.20526 0.94048 0.98757 0.91372 1.21081 0.99257 0.94286 0.98034 1.19439 1.00545 0.93870 0.93994 1.19080 1.01966 0.96316 0.90787 1.21378 1.06759 0.93391 0.87629 1.98308 1.97280 1.74088 1.34999 1.17944 0.97786 0.89646 0.87412 1.84975 1.37154 1.73185 1.32389 1.20420 1.01252 0.91840 0.97783 1.21543 1.01064 0.98073 0.94914 1.21545 0.98750 0.95844 0.99461 1.20417 0.99745 0.97192 0.93897 0.92650 0.95183 0.95821 0.85509 0.76637 0.90880 0.90612 0.91524 0.91656 0.91662 0.91737 0.90760 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.50 -14.40 9.64 -34.44 -0.33 -14.73 16 8 H 0.07 2.34 7.98 -52.48 -0.42 1.92 16 9 C 0.02 0.58 3.85 -29.04 -0.11 0.47 16 10 C -0.05 -0.96 5.08 -104.59 -0.53 -1.49 16 11 C -0.11 -1.95 9.23 -39.46 -0.36 -2.32 16 12 C -0.08 -1.22 5.74 -104.57 -0.60 -1.82 16 13 C -0.08 -1.26 5.74 -104.59 -0.60 -1.86 16 14 C -0.06 -1.13 6.32 -39.22 -0.25 -1.37 16 15 Cl -0.08 -1.17 26.79 -51.86 -1.39 -2.56 16 16 C 0.12 2.34 6.66 -39.30 -0.26 2.08 16 17 O -0.47 -9.25 12.21 -19.50 -0.24 -9.49 16 18 C -0.08 -0.94 4.99 -28.06 -0.14 -1.08 16 19 C -0.12 -1.23 5.98 -26.70 -0.16 -1.39 16 20 C -0.12 -1.17 5.97 -26.70 -0.16 -1.33 16 21 C -0.08 -0.90 5.67 -28.05 -0.16 -1.06 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 24 H 0.02 0.54 7.43 -51.93 -0.39 0.15 16 25 H 0.13 2.11 8.02 -52.48 -0.42 1.69 16 26 H 0.38 5.56 9.06 45.56 0.41 5.97 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.95 7.23 -51.93 -0.38 0.57 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -32.10 293.38 -8.54 -40.63 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.67 Total: 1.44 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -3.77 Total: -23.99 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.14 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.24 Total: -9.49 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.39 Total: -2.56 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.10 -8.54 -40.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.519 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds