Wall clock time and date at job start Mon Mar 30 2020 06:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48505 * 109.47085 * 269.99912 * 3 2 1 5 5 H 1.48503 * 109.47000 * 29.99348 * 3 2 1 6 6 H 1.48494 * 109.47286 * 149.99474 * 3 2 1 7 7 C 1.37878 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99928 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00239 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47496 * 180.02562 * 9 7 2 11 11 C 1.37898 * 120.13721 * 99.97922 * 10 9 7 12 12 C 1.38906 * 120.65193 * 180.02562 * 11 10 9 13 13 C 1.37760 * 119.76569 * 359.82234 * 12 11 10 14 14 C 1.38875 * 119.73076 * 0.28475 * 13 12 11 15 15 Cl 1.73597 * 119.75947 * 179.82080 * 14 13 12 16 16 C 1.38576 * 120.48004 * 359.80193 * 14 13 12 17 17 O 1.35923 * 120.17711 * 179.97438 * 16 14 13 18 18 C 1.50639 * 122.56582 * 180.40188 * 13 12 11 19 19 C 1.52718 * 110.60657 * 342.39089 * 18 13 12 20 20 C 1.53333 * 108.37556 * 51.06385 * 19 18 13 21 21 C 1.50653 * 117.69821 * 179.78105 * 12 11 10 22 22 H 0.96993 * 120.00196 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46900 * 59.99961 * 9 7 2 24 24 H 1.08998 * 109.47282 * 300.00649 * 9 7 2 25 25 H 1.08010 * 119.67523 * 0.02562 * 11 10 9 26 26 H 0.96696 * 114.00673 * 89.99795 * 17 16 14 27 27 H 1.08999 * 109.25434 * 102.64958 * 18 13 12 28 28 H 1.09000 * 109.25580 * 222.08086 * 18 13 12 29 29 H 1.08996 * 109.65657 * 291.36490 * 19 18 13 30 30 H 1.09001 * 109.71441 * 170.79870 * 19 18 13 31 31 H 1.09002 * 109.68234 * 170.37030 * 20 19 18 32 32 H 1.08999 * 109.67862 * 49.85600 * 20 19 18 33 33 H 1.09005 * 109.24875 * 42.19571 * 21 12 11 34 34 H 1.09000 * 109.24720 * 282.77878 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0010 11 6 4.4401 -3.1984 -1.1735 12 6 4.9047 -4.5074 -1.1860 13 6 4.9444 -5.2302 -0.0139 14 6 4.5139 -4.6463 1.1703 15 17 4.5593 -5.5581 2.6468 16 6 4.0488 -3.3410 1.1818 17 8 3.6284 -2.7758 2.3443 18 6 5.4443 -6.6500 0.0466 19 6 5.4642 -7.2727 -1.3478 20 6 6.2111 -6.3222 -2.2910 21 6 5.3489 -5.0802 -2.5067 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8912 24 1 3.8753 -0.6803 -0.8888 25 1 4.4123 -2.6321 -2.0928 26 1 4.3263 -2.3215 2.8358 27 1 6.4537 -6.6584 0.4578 28 1 4.7890 -7.2346 0.6922 29 1 4.4428 -7.4129 -1.7013 30 1 5.9769 -8.2340 -1.3138 31 1 6.3879 -6.8167 -3.2462 32 1 7.1632 -6.0351 -1.8446 33 1 5.9271 -4.3307 -3.0472 34 1 4.4716 -5.3493 -3.0949 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260182225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:05 Heat of formation + Delta-G solvation = -71.341468 kcal Electronic energy + Delta-G solvation = -17935.057247 eV Core-core repulsion = 15049.728856 eV Total energy + Delta-G solvation = -2885.328391 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32547 -38.83223 -37.51720 -36.37201 -34.99570 -33.33226 -32.36633 -29.57193 -28.87846 -25.18392 -24.11541 -23.25832 -22.51459 -20.34539 -19.02707 -18.70223 -17.54685 -16.90809 -16.20476 -16.18271 -15.67956 -15.09351 -14.93043 -14.71498 -14.33134 -13.86227 -13.76448 -13.65642 -13.44144 -13.21677 -12.87455 -12.64821 -12.40345 -12.07769 -11.96895 -11.77864 -11.64606 -11.59960 -11.45249 -11.33520 -11.00237 -10.77670 -9.44002 -9.19917 -8.28147 -6.32534 0.15325 0.31262 1.15619 1.35421 1.38472 1.49630 2.35638 2.55709 3.06109 3.23893 3.71100 3.79241 4.08742 4.13823 4.18805 4.25763 4.38159 4.63321 4.65275 4.73660 4.82973 4.93544 5.02513 5.04281 5.05548 5.12931 5.14731 5.30557 5.37635 5.50722 5.54499 5.60426 5.72611 5.88465 6.26002 6.71164 6.87166 7.29065 8.89383 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.006260 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.425561 B = 4472.053771 C = 5291.556345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.508 4.508 8 H 0.017 0.983 9 C 0.033 3.967 10 C -0.084 4.084 11 C -0.115 4.115 12 C -0.075 4.075 13 C -0.076 4.076 14 C -0.075 4.075 15 Cl -0.060 7.060 16 C 0.098 3.902 17 O -0.491 6.491 18 C -0.077 4.077 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.077 4.077 22 H 0.266 0.734 23 H 0.033 0.967 24 H 0.036 0.964 25 H 0.136 0.864 26 H 0.396 0.604 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.115 -12.221 -2.492 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.192 4.192 3 Si 0.777 3.223 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.546 4.546 8 H 0.035 0.965 9 C -0.004 4.004 10 C -0.085 4.085 11 C -0.133 4.133 12 C -0.075 4.075 13 C -0.077 4.077 14 C -0.102 4.102 15 Cl -0.031 7.031 16 C 0.053 3.947 17 O -0.302 6.302 18 C -0.113 4.113 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.114 4.114 22 H 0.075 0.925 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.154 0.846 26 H 0.253 0.747 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.429 -12.426 -2.505 20.751 hybrid contribution -0.300 1.209 0.726 1.442 sum 16.129 -11.217 -1.779 19.726 Atomic orbital electron populations 1.70075 1.08465 1.28171 1.52683 1.26009 0.95623 1.03476 0.94090 0.85602 0.79433 0.77817 0.79428 1.18660 1.21093 1.16755 1.21019 0.90733 0.92572 1.50254 0.96497 1.18466 0.94226 0.90060 0.97657 1.20424 0.96991 0.97953 0.93120 1.21288 0.99032 0.95598 0.97371 1.19868 0.99043 0.92810 0.95813 1.19593 1.00186 0.97881 0.90019 1.21502 1.06782 0.92873 0.89072 1.98303 1.97206 1.73420 1.34186 1.18113 0.98792 0.90756 0.87069 1.84910 1.38821 1.73681 1.32817 1.20535 1.01743 0.89513 0.99557 1.21575 1.01213 0.99262 0.93385 1.21557 0.98212 0.94662 1.00681 1.20547 1.00564 0.98620 0.91665 0.92469 0.94926 0.94608 0.84639 0.74706 0.89296 0.90824 0.92259 0.89042 0.89154 0.91199 0.89250 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.40 13.96 21.45 0.30 -61.10 16 2 C 0.00 0.25 5.47 84.65 0.46 0.72 16 3 Si 0.95 44.26 27.47 68.60 1.88 46.14 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.24 -10.36 6.54 99.48 0.65 -9.70 16 7 C -0.51 -30.32 9.64 25.60 0.25 -30.07 16 8 H 0.02 1.15 7.98 -2.91 -0.02 1.13 16 9 C 0.03 1.58 3.85 29.10 0.11 1.69 16 10 C -0.08 -3.56 5.08 -19.84 -0.10 -3.66 16 11 C -0.11 -4.10 9.23 22.35 0.21 -3.89 16 12 C -0.08 -2.22 5.74 -19.83 -0.11 -2.33 16 13 C -0.08 -2.26 5.74 -19.84 -0.11 -2.38 16 14 C -0.08 -2.60 6.32 22.50 0.14 -2.45 16 15 Cl -0.06 -1.81 26.79 -2.72 -0.07 -1.88 16 16 C 0.10 3.97 6.66 22.45 0.15 4.12 16 17 O -0.49 -19.99 12.21 -92.68 -1.13 -21.12 16 18 C -0.08 -1.69 4.99 29.74 0.15 -1.54 16 19 C -0.12 -1.99 5.98 30.61 0.18 -1.81 16 20 C -0.11 -1.78 5.97 30.61 0.18 -1.60 16 21 C -0.08 -1.61 5.67 29.74 0.17 -1.44 16 22 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 23 H 0.03 1.52 6.93 -2.38 -0.02 1.50 16 24 H 0.04 1.60 7.43 -2.39 -0.02 1.58 16 25 H 0.14 4.44 8.02 -2.91 -0.02 4.41 16 26 H 0.40 11.94 9.06 -74.06 -0.67 11.27 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.67 7.23 -2.39 -0.02 1.66 16 29 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 33 H 0.09 1.62 8.12 -2.38 -0.02 1.60 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -72.58 293.38 3.04 -69.54 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.39 Total: 13.06 kcal Atomic # 6 Polarization: -46.32 SS G_CDS: 1.67 Total: -44.64 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.30 Total: -61.10 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.13 Total: -21.12 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.88 kcal Total: -72.58 3.04 -69.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.802 kcal (2) G-P(sol) polarization free energy of solvation -72.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds