Wall clock time and date at job start Mon Mar 30 2020 07:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.67067 * 2 1 4 4 C 1.54715 * 110.74556 * 236.78046 * 2 1 3 5 5 C 1.51651 * 101.92084 * 216.18756 * 4 2 1 6 6 C 1.37771 * 132.15734 * 195.77425 * 5 4 2 7 7 C 1.38345 * 120.00032 * 179.48067 * 6 5 4 8 8 C 1.50693 * 120.11254 * 179.61630 * 7 6 5 9 9 C 1.52999 * 109.47504 * 89.99786 * 8 7 6 10 10 C 1.50698 * 109.47121 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00205 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00057 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99762 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00232 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47229 * 60.00302 * 14 12 10 16 16 H 1.48501 * 109.47219 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47068 * 300.00282 * 14 12 10 18 18 C 1.38294 * 119.77215 * 359.88896 * 7 6 5 19 19 C 1.38016 * 120.33612 * 0.17247 * 18 7 6 20 20 Cl 1.73598 * 119.88887 * 180.02562 * 19 18 7 21 21 C 1.38828 * 107.04369 * 15.47998 * 5 4 2 22 22 O 1.36165 * 111.24829 * 0.93632 * 21 5 4 23 23 H 1.09000 * 109.46992 * 183.21698 * 1 2 3 24 24 H 1.08996 * 109.46654 * 303.21874 * 1 2 3 25 25 H 1.09000 * 109.47235 * 63.21500 * 1 2 3 26 26 H 1.09002 * 110.93500 * 98.03470 * 4 2 1 27 27 H 1.08998 * 110.97525 * 334.36265 * 4 2 1 28 28 H 1.08001 * 120.00666 * 359.46177 * 6 5 4 29 29 H 1.09005 * 109.47151 * 209.99800 * 8 7 6 30 30 H 1.09007 * 109.46965 * 329.99335 * 8 7 6 31 31 H 1.08996 * 109.47180 * 300.00170 * 9 8 7 32 32 H 1.09002 * 109.46938 * 59.99958 * 9 8 7 33 33 H 0.97001 * 119.99641 * 180.02562 * 13 12 10 34 34 H 1.07992 * 119.82763 * 180.17598 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0781 -0.7926 -1.2104 5 6 3.3089 -1.4537 -0.6206 6 6 4.4001 -2.0616 -1.2018 7 6 5.4058 -2.5831 -0.4077 8 6 6.5964 -3.2563 -1.0404 9 6 7.6908 -2.2190 -1.2995 10 6 8.8816 -2.8924 -1.9317 11 1 8.8598 -3.9540 -2.1293 12 6 9.9985 -2.1532 -2.2588 13 7 10.0248 -0.8603 -2.0186 14 14 11.4742 -2.9877 -3.0430 15 1 11.0662 -3.6091 -4.3286 16 1 12.5365 -1.9809 -3.2945 17 1 11.9933 -4.0366 -2.1290 18 6 5.3121 -2.4895 0.9689 19 6 4.2193 -1.8820 1.5535 20 17 4.1139 -1.7703 3.2826 21 6 3.1997 -1.3587 0.7601 22 8 2.0430 -0.7380 1.1221 23 1 -0.3633 -1.0260 0.0577 24 1 -0.3632 0.5630 0.8597 25 1 -0.3634 0.4631 -0.9174 26 1 2.3491 -0.1212 -2.0252 27 1 1.3582 -1.5390 -1.5463 28 1 4.4704 -2.1314 -2.2772 29 1 6.9772 -4.0265 -0.3696 30 1 6.2969 -3.7121 -1.9842 31 1 7.3100 -1.4489 -1.9702 32 1 7.9902 -1.7633 -0.3557 33 1 10.8105 -0.3402 -2.2491 34 1 6.0980 -2.8937 1.5895 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260208723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:19 Heat of formation + Delta-G solvation = -37.293167 kcal Electronic energy + Delta-G solvation = -17285.242207 eV Core-core repulsion = 14401.390261 eV Total energy + Delta-G solvation = -2883.851946 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.10374 -37.92667 -36.28390 -33.80216 -33.08811 -31.92820 -30.72415 -28.70349 -26.70350 -24.95954 -22.24398 -21.74343 -21.69754 -20.03926 -17.50436 -16.85468 -16.42986 -15.64759 -15.22503 -14.50336 -14.41440 -13.89495 -13.34782 -13.19852 -12.90620 -12.86440 -12.71062 -12.37882 -12.28969 -11.79209 -11.54882 -11.31441 -11.23593 -11.01585 -10.87127 -10.78116 -10.55579 -10.37442 -9.88093 -9.52072 -9.14795 -8.54998 -8.36484 -7.74611 -6.01782 -4.05316 1.34897 1.47390 2.34702 3.16041 3.32237 3.37005 3.39074 3.77899 4.36242 4.41929 4.44629 4.79607 4.96448 5.03851 5.24299 5.33808 5.37570 5.43931 5.46487 5.56694 5.65108 5.77069 5.87123 5.91037 6.26091 6.33108 6.43000 6.57012 6.69539 6.90766 6.98565 7.22310 7.64300 7.76814 7.97200 8.37156 9.01385 9.58978 11.09117 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.004337 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.205789 B = 6453.815074 C = 7125.952707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 H 0.086 0.914 4 C -0.103 4.103 5 C -0.163 4.163 6 C -0.066 4.066 7 C -0.068 4.068 8 C -0.075 4.075 9 C 0.029 3.971 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.080 4.080 19 C -0.047 4.047 20 Cl -0.075 7.075 21 C 0.094 3.906 22 O -0.296 6.296 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.669 0.502 3.814 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 H 0.104 0.896 4 C -0.140 4.140 5 C -0.164 4.164 6 C -0.085 4.085 7 C -0.068 4.068 8 C -0.113 4.113 9 C -0.008 4.008 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.099 4.099 19 C -0.074 4.074 20 Cl -0.046 7.046 21 C 0.048 3.952 22 O -0.211 6.211 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.148 0.852 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.697 0.686 4.164 18.194 hybrid contribution 0.932 -0.230 -0.395 1.038 sum -16.766 0.456 3.769 17.190 Atomic orbital electron populations 1.21863 0.92196 1.03412 1.02980 1.23371 0.95557 0.95581 0.83607 0.89602 1.21850 0.94492 0.99256 0.98392 1.20638 0.97877 1.05063 0.92786 1.20362 0.91419 0.96242 1.00436 1.20234 0.96471 0.97930 0.92170 1.20812 0.92360 0.99029 0.99054 1.19094 0.91294 0.93257 0.97174 1.21203 0.99713 0.94819 1.40528 0.92578 1.25018 0.98633 0.94823 0.95846 1.69963 1.29644 1.05870 1.47798 0.86653 0.82305 0.79159 0.79856 1.20225 1.21294 1.20198 1.20777 0.95603 0.98411 0.95097 1.20056 0.95528 1.07990 0.83864 1.98338 1.98239 1.97287 1.10768 1.18998 0.87220 0.96791 0.92160 1.86862 1.34180 1.62575 1.37473 0.91445 0.91412 0.90344 0.88912 0.89117 0.85171 0.91811 0.91833 0.96400 0.96316 0.92896 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.59 37.16 0.36 -0.79 16 2 C 0.07 0.81 4.25 -25.83 -0.11 0.70 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.10 -1.12 6.64 -26.51 -0.18 -1.30 16 5 C -0.16 -2.41 6.27 -104.11 -0.65 -3.07 16 6 C -0.07 -1.07 9.70 -39.71 -0.39 -1.45 16 7 C -0.07 -1.20 5.14 -104.57 -0.54 -1.74 16 8 C -0.08 -1.49 5.29 -27.89 -0.15 -1.64 16 9 C 0.03 0.73 4.96 -27.88 -0.14 0.59 16 10 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 14 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.08 -1.37 9.45 -39.64 -0.37 -1.74 16 19 C -0.05 -0.78 6.34 -39.23 -0.25 -1.03 16 20 Cl -0.08 -1.14 28.94 -51.86 -1.50 -2.64 16 21 C 0.09 1.50 6.83 -38.93 -0.27 1.24 16 22 O -0.30 -4.34 10.80 -20.26 -0.22 -4.56 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.09 0.86 7.93 -51.93 -0.41 0.45 16 28 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 30 H 0.06 1.20 8.09 -51.92 -0.42 0.78 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.14 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -30.48 306.18 -9.08 -39.55 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -4.60 Total: -3.87 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -3.09 Total: -23.52 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.22 Total: -4.56 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.48 -9.08 -39.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.261 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds