Wall clock time and date at job start Mon Mar 30 2020 07:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.67067 * 2 1 4 4 C 1.54715 * 110.74556 * 236.78046 * 2 1 3 5 5 C 1.51651 * 101.92084 * 216.18756 * 4 2 1 6 6 C 1.37771 * 132.15734 * 195.77425 * 5 4 2 7 7 C 1.38345 * 120.00032 * 179.48067 * 6 5 4 8 8 C 1.50693 * 120.11254 * 179.61630 * 7 6 5 9 9 C 1.52999 * 109.47504 * 89.99786 * 8 7 6 10 10 C 1.50698 * 109.47121 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00205 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00057 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99762 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00232 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47229 * 60.00302 * 14 12 10 16 16 H 1.48501 * 109.47219 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47068 * 300.00282 * 14 12 10 18 18 C 1.38294 * 119.77215 * 359.88896 * 7 6 5 19 19 C 1.38016 * 120.33612 * 0.17247 * 18 7 6 20 20 Cl 1.73598 * 119.88887 * 180.02562 * 19 18 7 21 21 C 1.38828 * 107.04369 * 15.47998 * 5 4 2 22 22 O 1.36165 * 111.24829 * 0.93632 * 21 5 4 23 23 H 1.09000 * 109.46992 * 183.21698 * 1 2 3 24 24 H 1.08996 * 109.46654 * 303.21874 * 1 2 3 25 25 H 1.09000 * 109.47235 * 63.21500 * 1 2 3 26 26 H 1.09002 * 110.93500 * 98.03470 * 4 2 1 27 27 H 1.08998 * 110.97525 * 334.36265 * 4 2 1 28 28 H 1.08001 * 120.00666 * 359.46177 * 6 5 4 29 29 H 1.09005 * 109.47151 * 209.99800 * 8 7 6 30 30 H 1.09007 * 109.46965 * 329.99335 * 8 7 6 31 31 H 1.08996 * 109.47180 * 300.00170 * 9 8 7 32 32 H 1.09002 * 109.46938 * 59.99958 * 9 8 7 33 33 H 0.97001 * 119.99641 * 180.02562 * 13 12 10 34 34 H 1.07992 * 119.82763 * 180.17598 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0781 -0.7926 -1.2104 5 6 3.3089 -1.4537 -0.6206 6 6 4.4001 -2.0616 -1.2018 7 6 5.4058 -2.5831 -0.4077 8 6 6.5964 -3.2563 -1.0404 9 6 7.6908 -2.2190 -1.2995 10 6 8.8816 -2.8924 -1.9317 11 1 8.8598 -3.9540 -2.1293 12 6 9.9985 -2.1532 -2.2588 13 7 10.0248 -0.8603 -2.0186 14 14 11.4742 -2.9877 -3.0430 15 1 11.0662 -3.6091 -4.3286 16 1 12.5365 -1.9809 -3.2945 17 1 11.9933 -4.0366 -2.1290 18 6 5.3121 -2.4895 0.9689 19 6 4.2193 -1.8820 1.5535 20 17 4.1139 -1.7703 3.2826 21 6 3.1997 -1.3587 0.7601 22 8 2.0430 -0.7380 1.1221 23 1 -0.3633 -1.0260 0.0577 24 1 -0.3632 0.5630 0.8597 25 1 -0.3634 0.4631 -0.9174 26 1 2.3491 -0.1212 -2.0252 27 1 1.3582 -1.5390 -1.5463 28 1 4.4704 -2.1314 -2.2772 29 1 6.9772 -4.0265 -0.3696 30 1 6.2969 -3.7121 -1.9842 31 1 7.3100 -1.4489 -1.9702 32 1 7.9902 -1.7633 -0.3557 33 1 10.8105 -0.3402 -2.2491 34 1 6.0980 -2.8937 1.5895 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260208723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:17 Heat of formation + Delta-G solvation = -53.005835 kcal Electronic energy + Delta-G solvation = -17285.923559 eV Core-core repulsion = 14401.390261 eV Total energy + Delta-G solvation = -2884.533299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.20817 -39.17069 -37.54064 -35.67424 -34.04050 -33.65409 -31.84961 -30.29022 -27.75160 -26.69772 -23.79685 -23.03460 -22.65157 -21.53978 -18.60014 -18.52784 -17.94793 -16.79885 -16.56023 -16.43654 -15.56057 -15.10493 -14.69220 -14.45647 -14.27138 -14.05681 -13.85600 -13.76681 -13.40960 -13.06838 -12.98253 -12.79025 -12.56352 -12.42734 -12.29626 -12.06556 -11.94211 -11.73972 -11.64952 -11.29128 -11.13987 -10.53118 -9.76901 -9.02901 -8.17430 -6.29325 0.09707 0.19794 1.09632 1.42636 1.45332 1.53141 2.11360 2.42391 2.53300 3.15775 3.37603 3.51537 3.87084 4.03160 4.04881 4.19154 4.25423 4.27394 4.49335 4.69538 4.75446 4.82492 4.86786 4.91285 4.98209 5.07636 5.14747 5.19299 5.25188 5.44734 5.51565 5.57036 5.80546 5.86178 6.05400 6.24592 6.87716 7.40207 8.93708 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.004337 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.205789 B = 6453.815074 C = 7125.952707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 H 0.092 0.908 4 C -0.098 4.098 5 C -0.163 4.163 6 C -0.070 4.070 7 C -0.088 4.088 8 C -0.060 4.060 9 C 0.035 3.965 10 C -0.544 4.544 11 H 0.065 0.935 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.265 1.265 16 H -0.286 1.286 17 H -0.267 1.267 18 C -0.089 4.089 19 C -0.062 4.062 20 Cl -0.068 7.068 21 C 0.090 3.910 22 O -0.309 6.309 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.143 0.857 29 H 0.067 0.933 30 H 0.073 0.927 31 H -0.007 1.007 32 H -0.012 1.012 33 H 0.263 0.737 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.947 0.126 2.862 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.110 0.890 4 C -0.134 4.134 5 C -0.164 4.164 6 C -0.088 4.088 7 C -0.089 4.089 8 C -0.097 4.097 9 C -0.002 4.002 10 C -0.581 4.581 11 H 0.083 0.917 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.788 3.212 15 H -0.189 1.189 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.107 4.107 19 C -0.089 4.089 20 Cl -0.040 7.040 21 C 0.044 3.956 22 O -0.224 6.224 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.161 0.839 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.012 0.988 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.997 0.300 3.214 19.269 hybrid contribution 1.231 -0.045 -0.052 1.233 sum -17.766 0.255 3.163 18.047 Atomic orbital electron populations 1.21889 0.89668 1.03722 1.04539 1.23750 0.97485 0.95380 0.82308 0.88993 1.21999 0.92892 0.99782 0.98775 1.21042 0.98580 1.04029 0.92749 1.20512 0.91395 0.95957 1.00984 1.20066 0.96619 0.99563 0.92643 1.20522 0.91641 0.97604 0.99924 1.18939 0.92614 0.93874 0.94775 1.21689 1.00661 0.95443 1.40354 0.91684 1.25968 1.01947 0.95400 0.96383 1.70108 1.30633 1.07550 1.49100 0.85518 0.78247 0.78135 0.79262 1.18950 1.21111 1.19223 1.20797 0.96040 0.98852 0.95033 1.20149 0.95854 1.08428 0.84466 1.98330 1.98223 1.97274 1.10129 1.19220 0.87418 0.96356 0.92653 1.86862 1.33423 1.62692 1.39456 0.91585 0.91158 0.87641 0.86982 0.87087 0.83931 0.91411 0.90795 0.98844 0.99334 0.92850 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.59 71.98 0.69 -1.07 16 2 C 0.07 1.26 4.25 31.18 0.13 1.39 16 3 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.10 -1.86 6.64 30.74 0.20 -1.65 16 5 C -0.16 -4.61 6.27 -19.53 -0.12 -4.73 16 6 C -0.07 -2.22 9.70 22.18 0.22 -2.01 16 7 C -0.09 -3.17 5.14 -19.83 -0.10 -3.27 16 8 C -0.06 -2.39 5.29 29.85 0.16 -2.23 16 9 C 0.04 1.83 4.96 29.85 0.15 1.97 16 10 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 11 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 12 C 0.00 0.05 5.46 84.65 0.46 0.51 16 13 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 14 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 15 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C -0.09 -3.08 9.45 22.23 0.21 -2.87 16 19 C -0.06 -2.05 6.34 22.50 0.14 -1.91 16 20 Cl -0.07 -2.07 28.94 -2.72 -0.08 -2.15 16 21 C 0.09 2.79 6.83 22.69 0.15 2.94 16 22 O -0.31 -8.60 10.80 -95.43 -1.03 -9.63 16 23 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.11 1.70 7.93 -2.39 -0.02 1.68 16 28 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 29 H 0.07 2.61 8.09 -2.38 -0.02 2.60 16 30 H 0.07 2.77 8.09 -2.38 -0.02 2.75 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -66.09 306.18 4.82 -61.27 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.09 Total: 4.35 kcal Atomic # 6 Polarization: -45.61 SS G_CDS: 2.53 Total: -43.08 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.28 Total: -56.52 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -1.03 Total: -9.63 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -66.09 4.82 -61.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.267 kcal (2) G-P(sol) polarization free energy of solvation -66.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds