Wall clock time and date at job start Mon Mar 30 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38288 * 119.98343 * 2 1 4 4 C 1.38231 * 120.12243 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.96260 * 180.02562 * 4 3 2 6 6 C 1.38200 * 120.07363 * 0.04445 * 4 3 2 7 7 C 1.50700 * 120.01801 * 179.97438 * 6 4 3 8 8 C 1.50700 * 115.55231 * 300.79271 * 7 6 4 9 9 H 1.07999 * 120.00432 * 155.36004 * 8 7 6 10 10 C 1.37880 * 119.99853 * 335.36342 * 8 7 6 11 11 N 1.31518 * 119.99620 * 160.34487 * 10 8 7 12 12 Si 1.86794 * 120.00008 * 340.34234 * 10 8 7 13 13 H 1.48502 * 109.47245 * 85.91449 * 12 10 8 14 14 H 1.48506 * 109.47086 * 205.90985 * 12 10 8 15 15 H 1.48493 * 109.47194 * 325.90782 * 12 10 8 16 16 C 1.53002 * 117.49822 * 155.09099 * 7 6 4 17 17 C 1.52996 * 117.49966 * 86.46656 * 7 6 4 18 18 C 1.38667 * 119.95625 * 359.65878 * 6 4 3 19 19 O 1.35925 * 120.05545 * 180.34125 * 18 6 4 20 20 C 1.38220 * 119.97473 * 179.97438 * 2 1 3 21 21 Cl 1.73599 * 120.03770 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.46797 * 270.02469 * 1 2 3 23 23 H 1.09000 * 109.46677 * 30.01974 * 1 2 3 24 24 H 1.09000 * 109.47237 * 150.01830 * 1 2 3 25 25 H 1.07997 * 119.93745 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47333 * 95.96458 * 5 4 3 27 27 H 1.09005 * 109.46685 * 215.96333 * 5 4 3 28 28 H 1.08997 * 109.46900 * 335.95380 * 5 4 3 29 29 H 0.97003 * 119.99599 * 179.97438 * 11 10 8 30 30 H 1.09000 * 117.49635 * 359.97438 * 16 7 6 31 31 H 1.08992 * 117.49969 * 145.02200 * 16 7 6 32 32 H 1.09000 * 117.50118 * 214.98049 * 17 7 6 33 33 H 1.09002 * 117.49754 * 359.97438 * 17 7 6 34 34 H 0.96698 * 114.00496 * 270.25259 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1978 0.0000 4 6 3.5804 1.2012 0.0005 5 6 4.3299 2.5086 0.0011 6 6 4.2759 0.0069 0.0001 7 6 5.7829 0.0120 0.0001 8 6 6.4305 0.7106 -1.1676 9 1 7.4291 1.1107 -1.0714 10 6 5.7482 0.8392 -2.3588 11 7 6.1163 1.7508 -3.2323 12 14 4.3011 -0.2815 -2.7318 13 1 3.0641 0.2962 -2.1475 14 1 4.1405 -0.4097 -4.2026 15 1 4.5481 -1.6218 -2.1422 16 6 6.4935 -1.2167 0.5714 17 6 6.4890 0.0976 1.3547 18 6 3.5861 -1.1960 0.0064 19 8 4.2681 -2.3718 0.0130 20 6 2.1976 -1.1973 0.0005 21 17 1.3299 -2.7009 0.0005 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8901 -0.5135 25 1 1.6569 2.1323 0.0004 26 1 4.6029 2.7705 1.0233 27 1 5.2325 2.4102 -0.6021 28 1 3.6966 3.2906 -0.4177 29 1 5.6365 1.8410 -4.0705 30 1 5.8710 -2.0285 0.9475 31 1 7.4295 -1.5199 0.1026 32 1 7.4222 0.6590 1.4012 33 1 5.8636 0.1506 2.2458 34 1 4.4692 -2.7149 -0.8684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260212109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:19 Heat of formation + Delta-G solvation = 9.054148 kcal Electronic energy + Delta-G solvation = -19099.236329 eV Core-core repulsion = 16217.394153 eV Total energy + Delta-G solvation = -2881.842176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16677 -36.82964 -36.52105 -35.69459 -32.70075 -32.19449 -30.16047 -27.18295 -26.21746 -25.53774 -21.88377 -21.31727 -20.61942 -19.19649 -17.59547 -17.11470 -15.91561 -15.44426 -15.16695 -14.27975 -13.82952 -13.56732 -13.21025 -13.00509 -12.71663 -12.54940 -12.34156 -11.91001 -11.83127 -11.55816 -11.19706 -11.01241 -10.75137 -10.70252 -10.55117 -10.31249 -10.06466 -9.78712 -9.52578 -9.25134 -8.98143 -8.30036 -7.98959 -7.70391 -6.29625 -4.15442 1.57366 1.63501 2.48253 3.17333 3.25715 3.37833 3.92347 4.29980 4.58494 4.80061 5.07704 5.27394 5.43407 5.54772 5.58854 5.72052 5.83496 5.90058 6.04788 6.17030 6.23132 6.34741 6.42956 6.49616 6.58987 6.61519 6.75218 6.79788 6.99013 7.14986 7.19459 7.31513 7.55064 7.65660 8.09959 8.38553 8.77164 9.36483 10.79330 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020068 B = 0.010442 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.910324 B = 2680.902854 C = 2904.014196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.126 4.126 4 C -0.028 4.028 5 C -0.136 4.136 6 C -0.056 4.056 7 C 0.047 3.953 8 C -0.486 4.486 9 H 0.082 0.918 10 C 0.090 3.910 11 N -0.877 5.877 12 Si 0.860 3.140 13 H -0.253 1.253 14 H -0.300 1.300 15 H -0.275 1.275 16 C -0.208 4.208 17 C -0.185 4.185 18 C 0.121 3.879 19 O -0.482 6.482 20 C -0.078 4.078 21 Cl -0.078 7.078 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.126 0.874 26 H 0.061 0.939 27 H 0.130 0.870 28 H 0.049 0.951 29 H 0.267 0.733 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 -3.051 5.396 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.145 4.145 4 C -0.028 4.028 5 C -0.192 4.192 6 C -0.057 4.057 7 C 0.046 3.954 8 C -0.522 4.522 9 H 0.100 0.900 10 C -0.115 4.115 11 N -0.512 5.512 12 Si 0.690 3.310 13 H -0.177 1.177 14 H -0.228 1.228 15 H -0.203 1.203 16 C -0.245 4.245 17 C -0.222 4.222 18 C 0.075 3.925 19 O -0.296 6.296 20 C -0.105 4.105 21 Cl -0.049 7.049 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.144 0.856 26 H 0.080 0.920 27 H 0.148 0.852 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -9.213 -3.015 5.784 11.288 hybrid contribution -0.799 -0.911 -0.880 1.497 sum -10.012 -3.925 4.904 11.819 Atomic orbital electron populations 1.20778 0.90763 1.02928 1.02333 1.19480 0.96131 0.91156 1.00913 1.20842 0.93747 0.96601 1.03275 1.19774 0.92588 0.95972 0.94475 1.21252 1.03569 0.91473 1.02861 1.19601 0.96557 0.90647 0.98898 1.17895 0.84980 0.98541 0.93942 1.20223 1.02519 1.36158 0.93288 0.90046 1.24903 0.96625 0.93914 0.96052 1.69982 1.41565 1.29897 1.09751 0.87307 0.84883 0.82069 0.76740 1.17712 1.22754 1.20279 1.23544 1.03037 0.92258 1.05684 1.22808 1.02066 1.02464 0.94903 1.17901 0.87277 0.86434 1.00882 1.84789 1.75060 1.35533 1.34217 1.21131 0.91402 0.86663 1.11313 1.98295 1.76527 1.32900 1.97174 0.91120 0.91418 0.91288 0.85597 0.92023 0.85217 0.93240 0.92308 0.88064 0.90310 0.89937 0.91250 0.75330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.61 36.01 0.35 -1.15 16 2 C -0.08 -1.32 5.43 -104.61 -0.57 -1.89 16 3 C -0.13 -2.27 8.46 -39.57 -0.33 -2.60 16 4 C -0.03 -0.56 4.02 -104.64 -0.42 -0.99 16 5 C -0.14 -2.68 9.38 36.00 0.34 -2.34 16 6 C -0.06 -1.21 2.58 -104.48 -0.27 -1.48 16 7 C 0.05 1.07 1.18 -156.81 -0.18 0.89 16 8 C -0.49 -12.61 7.45 -34.44 -0.26 -12.86 16 9 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 10 C 0.09 2.39 4.27 -17.82 -0.08 2.31 16 11 N -0.88 -24.68 13.96 55.43 0.77 -23.91 16 12 Si 0.86 20.49 22.95 -169.99 -3.90 16.59 16 13 H -0.25 -5.84 4.27 56.52 0.24 -5.60 16 14 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 15 H -0.28 -6.14 4.13 56.52 0.23 -5.90 16 16 C -0.21 -4.37 8.97 -26.73 -0.24 -4.61 16 17 C -0.18 -3.81 9.94 -26.73 -0.27 -4.07 16 18 C 0.12 2.47 4.07 -39.20 -0.16 2.31 16 19 O -0.48 -9.40 9.11 -19.51 -0.18 -9.58 16 20 C -0.08 -1.47 5.87 -39.36 -0.23 -1.70 16 21 Cl -0.08 -1.27 26.84 -51.86 -1.39 -2.66 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 24 H 0.07 0.90 6.90 -51.93 -0.36 0.55 16 25 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.13 3.02 4.44 -51.93 -0.23 2.79 16 28 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.10 2.07 5.49 -51.93 -0.29 1.79 16 31 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.39 7.00 6.88 45.56 0.31 7.31 16 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -27.51 274.57 -6.70 -34.21 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -3.82 Total: 9.39 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -2.32 Total: -28.17 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.77 Total: -23.91 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.18 Total: -9.58 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -3.90 Total: 16.59 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.39 Total: -2.66 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.51 -6.70 -34.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260212109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.266 kcal (2) G-P(sol) polarization free energy of solvation -27.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds