Wall clock time and date at job start Mon Mar 30 2020 06:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38288 * 119.98343 * 2 1 4 4 C 1.38231 * 120.12243 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.96260 * 180.02562 * 4 3 2 6 6 C 1.38200 * 120.07363 * 0.04445 * 4 3 2 7 7 C 1.50700 * 120.01801 * 179.97438 * 6 4 3 8 8 C 1.50700 * 115.55231 * 300.79271 * 7 6 4 9 9 H 1.07999 * 120.00432 * 155.36004 * 8 7 6 10 10 C 1.37880 * 119.99853 * 335.36342 * 8 7 6 11 11 N 1.31518 * 119.99620 * 160.34487 * 10 8 7 12 12 Si 1.86794 * 120.00008 * 340.34234 * 10 8 7 13 13 H 1.48502 * 109.47245 * 85.91449 * 12 10 8 14 14 H 1.48506 * 109.47086 * 205.90985 * 12 10 8 15 15 H 1.48493 * 109.47194 * 325.90782 * 12 10 8 16 16 C 1.53002 * 117.49822 * 155.09099 * 7 6 4 17 17 C 1.52996 * 117.49966 * 86.46656 * 7 6 4 18 18 C 1.38667 * 119.95625 * 359.65878 * 6 4 3 19 19 O 1.35925 * 120.05545 * 180.34125 * 18 6 4 20 20 C 1.38220 * 119.97473 * 179.97438 * 2 1 3 21 21 Cl 1.73599 * 120.03770 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.46797 * 270.02469 * 1 2 3 23 23 H 1.09000 * 109.46677 * 30.01974 * 1 2 3 24 24 H 1.09000 * 109.47237 * 150.01830 * 1 2 3 25 25 H 1.07997 * 119.93745 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47333 * 95.96458 * 5 4 3 27 27 H 1.09005 * 109.46685 * 215.96333 * 5 4 3 28 28 H 1.08997 * 109.46900 * 335.95380 * 5 4 3 29 29 H 0.97003 * 119.99599 * 179.97438 * 11 10 8 30 30 H 1.09000 * 117.49635 * 359.97438 * 16 7 6 31 31 H 1.08992 * 117.49969 * 145.02200 * 16 7 6 32 32 H 1.09000 * 117.50118 * 214.98049 * 17 7 6 33 33 H 1.09002 * 117.49754 * 359.97438 * 17 7 6 34 34 H 0.96698 * 114.00496 * 270.25259 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1978 0.0000 4 6 3.5804 1.2012 0.0005 5 6 4.3299 2.5086 0.0011 6 6 4.2759 0.0069 0.0001 7 6 5.7829 0.0120 0.0001 8 6 6.4305 0.7106 -1.1676 9 1 7.4291 1.1107 -1.0714 10 6 5.7482 0.8392 -2.3588 11 7 6.1163 1.7508 -3.2323 12 14 4.3011 -0.2815 -2.7318 13 1 3.0641 0.2962 -2.1475 14 1 4.1405 -0.4097 -4.2026 15 1 4.5481 -1.6218 -2.1422 16 6 6.4935 -1.2167 0.5714 17 6 6.4890 0.0976 1.3547 18 6 3.5861 -1.1960 0.0064 19 8 4.2681 -2.3718 0.0130 20 6 2.1976 -1.1973 0.0005 21 17 1.3299 -2.7009 0.0005 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8901 -0.5135 25 1 1.6569 2.1323 0.0004 26 1 4.6029 2.7705 1.0233 27 1 5.2325 2.4102 -0.6021 28 1 3.6966 3.2906 -0.4177 29 1 5.6365 1.8410 -4.0705 30 1 5.8710 -2.0285 0.9475 31 1 7.4295 -1.5199 0.1026 32 1 7.4222 0.6590 1.4012 33 1 5.8636 0.1506 2.2458 34 1 4.4692 -2.7149 -0.8684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260212109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:18 Heat of formation + Delta-G solvation = -7.401223 kcal Electronic energy + Delta-G solvation = -19099.949888 eV Core-core repulsion = 16217.394153 eV Total energy + Delta-G solvation = -2882.555734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66385 -38.31488 -38.01383 -37.15750 -34.46198 -33.83321 -31.59190 -28.68692 -27.71104 -27.27182 -23.37222 -22.95983 -22.14012 -20.88756 -19.14307 -18.88125 -17.37346 -17.09720 -16.70252 -16.03013 -15.26232 -15.14010 -14.83798 -14.51562 -14.17268 -14.08747 -13.68587 -13.39703 -13.16418 -13.00569 -12.78294 -12.61138 -12.37319 -12.26869 -12.09992 -11.90844 -11.75010 -11.59038 -11.23730 -10.94392 -10.60479 -10.24152 -9.44329 -9.21661 -8.33988 -6.21323 0.11609 0.18754 1.11095 1.28700 1.36686 1.44132 2.34343 2.47439 2.82979 3.18787 3.63089 3.74842 3.92793 4.13692 4.22157 4.45562 4.46904 4.61773 4.67496 4.76729 4.78598 4.82634 4.95675 4.98297 5.06670 5.18691 5.20332 5.34940 5.35567 5.56853 5.58608 5.71793 5.76154 5.99664 6.34279 6.63453 6.70123 7.32299 8.77941 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020068 B = 0.010442 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.910324 B = 2680.902854 C = 2904.014196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.126 4.126 4 C -0.045 4.045 5 C -0.131 4.131 6 C -0.080 4.080 7 C 0.033 3.967 8 C -0.482 4.482 9 H 0.041 0.959 10 C 0.053 3.947 11 N -0.921 5.921 12 Si 0.908 3.092 13 H -0.239 1.239 14 H -0.318 1.318 15 H -0.257 1.257 16 C -0.198 4.198 17 C -0.176 4.176 18 C 0.109 3.891 19 O -0.484 6.484 20 C -0.089 4.089 21 Cl -0.057 7.057 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.157 0.843 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.265 0.735 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -3.887 6.573 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 C -0.144 4.144 4 C -0.046 4.046 5 C -0.187 4.187 6 C -0.081 4.081 7 C 0.032 3.968 8 C -0.519 4.519 9 H 0.059 0.941 10 C -0.148 4.148 11 N -0.559 5.559 12 Si 0.737 3.263 13 H -0.162 1.162 14 H -0.248 1.248 15 H -0.183 1.183 16 C -0.235 4.235 17 C -0.213 4.213 18 C 0.063 3.937 19 O -0.299 6.299 20 C -0.116 4.116 21 Cl -0.029 7.029 22 H 0.109 0.891 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.175 0.825 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -12.059 -3.871 6.993 14.468 hybrid contribution 0.106 -0.633 -1.169 1.334 sum -11.953 -4.504 5.823 14.038 Atomic orbital electron populations 1.20894 0.87694 1.04160 1.03991 1.19981 0.98321 0.90307 0.98527 1.21189 0.92817 0.98326 1.02070 1.19946 0.93883 0.95465 0.95267 1.21116 1.02231 0.92353 1.03021 1.19513 0.95528 0.91816 1.01272 1.17744 0.86384 0.99295 0.93357 1.20252 1.01001 1.35702 0.94908 0.94080 1.25416 0.98896 0.94681 0.95771 1.70093 1.43486 1.31912 1.10374 0.86534 0.82955 0.81610 0.75190 1.16243 1.24752 1.18280 1.23495 1.02549 0.92335 1.05109 1.22824 1.01871 1.01924 0.94682 1.18000 0.88150 0.86085 1.01481 1.84756 1.75225 1.35332 1.34564 1.21285 0.91092 0.88208 1.11042 1.98300 1.75834 1.31662 1.97055 0.89082 0.89383 0.90944 0.82546 0.90713 0.89143 0.91509 0.92540 0.86941 0.90927 0.90259 0.89680 0.74865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 9.61 71.24 0.68 -1.74 16 2 C -0.07 -2.16 5.43 -19.86 -0.11 -2.27 16 3 C -0.13 -4.06 8.46 22.28 0.19 -3.87 16 4 C -0.05 -1.75 4.02 -19.88 -0.08 -1.83 16 5 C -0.13 -5.06 9.38 71.24 0.67 -4.39 16 6 C -0.08 -3.33 2.58 -19.77 -0.05 -3.38 16 7 C 0.03 1.49 1.18 -53.67 -0.06 1.42 16 8 C -0.48 -25.80 7.45 25.60 0.19 -25.60 16 9 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 10 C 0.05 2.88 4.27 84.65 0.36 3.25 16 11 N -0.92 -53.74 13.96 21.45 0.30 -53.44 16 12 Si 0.91 42.30 22.95 68.60 1.57 43.87 16 13 H -0.24 -10.45 4.27 99.48 0.42 -10.03 16 14 H -0.32 -15.61 7.11 99.48 0.71 -14.90 16 15 H -0.26 -10.93 4.13 99.48 0.41 -10.52 16 16 C -0.20 -8.15 8.97 30.60 0.27 -7.88 16 17 C -0.18 -7.13 9.94 30.59 0.30 -6.83 16 18 C 0.11 4.17 4.07 22.52 0.09 4.26 16 19 O -0.48 -17.79 9.11 -92.71 -0.84 -18.64 16 20 C -0.09 -3.04 5.87 22.41 0.13 -2.91 16 21 Cl -0.06 -1.68 26.84 -2.72 -0.07 -1.75 16 22 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 24 H 0.07 1.56 6.90 -2.39 -0.02 1.54 16 25 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 26 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.09 4.29 4.44 -2.38 -0.01 4.28 16 28 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 29 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.11 4.41 5.49 -2.39 -0.01 4.39 16 31 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.39 13.28 6.88 -74.06 -0.51 12.77 16 Total: -1.00 -59.95 274.57 3.59 -56.36 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.04 Total: 25.36 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 2.59 Total: -51.77 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.30 Total: -53.44 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.84 Total: -18.64 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.57 Total: 43.87 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.07 Total: -1.75 kcal Total: -59.95 3.59 -56.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260212109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.961 kcal (2) G-P(sol) polarization free energy of solvation -59.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds