Wall clock time and date at job start Mon Mar 30 2020 08:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99558 * 2 1 4 4 H 1.48504 * 109.47367 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47431 * 240.00040 * 3 2 1 6 6 H 1.48499 * 109.46992 * 120.00225 * 3 2 1 7 7 C 1.37870 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00491 * 17.97192 * 7 2 1 9 9 C 1.50707 * 120.00035 * 197.96853 * 7 2 1 10 10 H 1.09005 * 109.51583 * 305.66939 * 9 7 2 11 11 C 1.53115 * 109.52106 * 65.79388 * 9 7 2 12 12 C 1.53049 * 109.27046 * 177.49707 * 11 9 7 13 13 N 1.46844 * 109.57575 * 300.91725 * 12 11 9 14 14 C 1.46842 * 111.19889 * 61.71275 * 13 12 11 15 15 H 1.09002 * 109.46220 * 58.26873 * 14 13 12 16 16 C 1.50701 * 109.46277 * 178.23718 * 14 13 12 17 17 C 1.38167 * 119.61167 * 245.05240 * 16 14 13 18 18 C 1.38779 * 119.14340 * 179.97438 * 17 16 14 19 19 Cl 1.73597 * 120.80322 * 180.02562 * 18 17 16 20 20 C 1.38823 * 118.39281 * 359.97438 * 18 17 16 21 21 C 1.38130 * 119.14512 * 0.02562 * 20 18 17 22 22 N 1.31877 * 119.60927 * 64.78518 * 16 14 13 23 23 C 1.53039 * 109.52434 * 298.25641 * 14 13 12 24 24 H 0.97005 * 119.99685 * 174.61864 * 1 2 3 25 25 H 1.08994 * 109.50904 * 297.50274 * 11 9 7 26 26 H 1.09000 * 109.49996 * 57.62497 * 11 9 7 27 27 H 1.09001 * 109.45494 * 180.86765 * 12 11 9 28 28 H 1.08995 * 109.40058 * 60.93082 * 12 11 9 29 29 H 1.00904 * 110.99506 * 185.80795 * 13 12 11 30 30 H 1.07997 * 120.42672 * 0.02562 * 17 16 14 31 31 H 1.07995 * 120.42529 * 180.02562 * 20 18 17 32 32 H 1.07998 * 119.60481 * 180.02562 * 21 20 18 33 33 H 1.08996 * 109.50253 * 299.23661 * 23 14 13 34 34 H 1.09003 * 109.50198 * 179.11732 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6966 -1.2125 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 1.5041 -2.1064 -0.2895 9 6 3.4565 -1.2259 0.4021 10 1 4.0176 -0.5128 -0.2019 11 6 3.5852 -0.8559 1.8823 12 6 5.0543 -0.9508 2.3007 13 7 5.5434 -2.3167 2.0734 14 6 5.4738 -2.6758 0.6513 15 1 6.0626 -1.9674 0.0685 16 6 6.0238 -4.0653 0.4568 17 6 7.1772 -4.2457 -0.2823 18 6 7.6755 -5.5294 -0.4548 19 17 9.1217 -5.8054 -1.3746 20 6 6.9902 -6.5872 0.1268 21 6 5.8434 -6.3283 0.8520 22 7 5.4016 -5.0942 0.9984 23 6 4.0171 -2.6340 0.1839 24 1 -0.4850 -0.8364 -0.0788 25 1 3.2273 0.1621 2.0355 26 1 2.9915 -1.5453 2.4826 27 1 5.1474 -0.7029 3.3581 28 1 5.6450 -0.2506 1.7101 29 1 6.4809 -2.4289 2.4292 30 1 7.6848 -3.3985 -0.7194 31 1 7.3490 -7.5995 0.0138 32 1 5.3046 -7.1457 1.3080 33 1 3.4304 -3.3521 0.7568 34 1 3.9675 -2.8854 -0.8756 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260213860.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:14 Heat of formation + Delta-G solvation = 20.548685 kcal Electronic energy + Delta-G solvation = -17782.377943 eV Core-core repulsion = 14933.326959 eV Total energy + Delta-G solvation = -2849.050984 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46727 -37.92018 -36.89148 -33.50368 -32.33919 -32.09141 -30.89866 -29.19741 -25.24304 -24.01948 -23.65201 -21.68399 -20.85809 -18.70463 -17.63547 -17.07000 -16.68797 -16.00770 -15.31988 -14.59002 -14.11063 -13.82632 -13.70792 -13.67543 -13.25801 -12.81609 -12.47899 -12.28295 -12.02340 -11.97943 -11.55286 -11.22719 -10.63550 -10.45978 -10.26546 -9.87828 -9.67425 -9.60337 -9.45029 -9.34201 -9.10803 -8.71919 -8.14863 -8.02423 -6.38326 -3.98468 0.89995 0.94717 1.71342 3.39201 3.44254 3.59531 3.62952 4.19623 4.41353 4.53101 4.67763 4.72979 4.93178 5.22614 5.31386 5.41393 5.50725 5.68287 5.70663 5.77391 5.87377 5.98860 6.22956 6.35716 6.43818 6.49854 6.79854 6.89853 7.08177 7.32780 7.49432 7.59770 7.77754 7.98724 8.24109 8.44846 8.98230 9.69535 11.00915 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.004574 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.736395 B = 6120.691748 C = 6181.494407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.028 3.972 3 Si 1.047 2.953 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.594 4.594 8 H 0.054 0.946 9 C 0.022 3.978 10 H 0.014 0.986 11 C -0.120 4.120 12 C 0.058 3.942 13 N -0.670 5.670 14 C 0.136 3.864 15 H 0.048 0.952 16 C 0.162 3.838 17 C -0.165 4.165 18 C 0.008 3.992 19 Cl -0.061 7.061 20 C -0.176 4.176 21 C 0.115 3.885 22 N -0.446 5.446 23 C -0.082 4.082 24 H 0.267 0.733 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.328 0.672 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.074 0.926 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.826 -10.001 0.846 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.877 3.123 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.631 4.631 8 H 0.072 0.928 9 C 0.003 3.997 10 H 0.032 0.968 11 C -0.158 4.158 12 C -0.070 4.070 13 N -0.301 5.301 14 C 0.025 3.975 15 H 0.066 0.934 16 C 0.024 3.976 17 C -0.186 4.186 18 C -0.027 4.027 19 Cl -0.032 7.032 20 C -0.197 4.197 21 C -0.043 4.043 22 N -0.154 5.154 23 C -0.121 4.121 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.092 0.908 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.367 -8.504 1.471 18.503 hybrid contribution 1.944 -1.499 -1.107 2.693 sum 18.311 -10.003 0.364 20.868 Atomic orbital electron populations 1.70850 1.06990 1.30856 1.45768 1.25753 0.96163 1.02395 0.93292 0.84011 0.75342 0.75905 0.77076 1.21349 1.21238 1.20039 1.21958 0.94983 0.96052 1.50144 0.92770 1.19011 0.97197 0.91769 0.91749 0.96839 1.22128 0.92235 1.01599 0.99843 1.22085 0.98391 0.86986 0.99573 1.60212 1.27679 1.26743 1.15429 1.20596 0.99289 0.87820 0.89746 0.93448 1.21435 0.89462 0.95842 0.90902 1.22000 0.98086 0.96438 1.02122 1.21242 0.90086 0.94908 0.96449 1.98385 1.35996 1.96597 1.72228 1.22098 0.97619 0.99432 1.00524 1.22935 0.92458 0.94637 0.94279 1.67593 1.31031 0.98710 1.18076 1.21514 0.90740 1.00592 0.99213 0.92324 0.91888 0.91812 0.91671 0.96061 0.85540 0.83987 0.84011 0.81856 0.90773 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.21 13.69 55.43 0.76 -27.45 16 2 C 0.03 0.82 5.34 -17.82 -0.10 0.73 16 3 Si 1.05 25.20 26.41 -169.99 -4.49 20.71 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.01 5.58 56.52 0.32 -5.69 16 7 C -0.59 -16.80 8.82 -34.44 -0.30 -17.10 16 8 H 0.05 1.67 7.99 -52.48 -0.42 1.25 16 9 C 0.02 0.52 1.74 -91.65 -0.16 0.36 16 10 H 0.01 0.32 6.79 -51.93 -0.35 -0.03 16 11 C -0.12 -2.61 5.07 -26.65 -0.13 -2.75 16 12 C 0.06 1.01 6.55 -3.83 -0.03 0.99 16 13 N -0.67 -11.09 6.49 -107.98 -0.70 -11.79 16 14 C 0.14 2.30 2.74 -68.88 -0.19 2.11 16 15 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 16 C 0.16 2.46 5.67 -82.60 -0.47 1.99 16 17 C -0.17 -2.10 9.53 -39.41 -0.38 -2.48 16 18 C 0.01 0.09 6.37 -39.17 -0.25 -0.16 16 19 Cl -0.06 -0.61 29.02 -51.86 -1.50 -2.12 16 20 C -0.18 -1.83 9.94 -39.40 -0.39 -2.23 16 21 C 0.11 1.37 11.18 -17.56 -0.20 1.17 16 22 N -0.45 -6.93 9.87 -9.49 -0.09 -7.02 16 23 C -0.08 -1.73 4.47 -26.65 -0.12 -1.85 16 24 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16 25 H 0.06 1.42 4.87 -51.93 -0.25 1.17 16 26 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.33 4.59 8.78 -39.29 -0.35 4.25 16 30 H 0.14 1.58 7.95 -52.49 -0.42 1.16 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.07 1.70 7.93 -51.93 -0.41 1.29 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 292.30 15.07 4.40 4.40 Total: -1.00 -30.97 292.30 -8.72 -39.68 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.38 Total: 2.79 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.71 Total: -19.22 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.04 Total: -46.26 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -4.49 Total: 20.71 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.97 -8.72 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213860.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.234 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds