Wall clock time and date at job start Mon Mar 30 2020 08:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86811 * 119.99949 * 2 1 4 4 H 1.48501 * 109.46733 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47033 * 119.99791 * 3 2 1 6 6 H 1.48491 * 109.47121 * 239.99975 * 3 2 1 7 7 C 1.37876 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99962 * 172.67271 * 7 2 1 9 9 C 1.50697 * 119.99933 * 352.67130 * 7 2 1 10 10 H 1.08999 * 109.52130 * 329.37190 * 9 7 2 11 11 C 1.53120 * 109.52525 * 209.23867 * 9 7 2 12 12 C 1.53034 * 109.27939 * 182.43971 * 11 9 7 13 13 N 1.46856 * 109.52251 * 59.18067 * 12 11 9 14 14 C 1.46849 * 111.19823 * 298.25829 * 13 12 11 15 15 H 1.08998 * 109.46166 * 301.72832 * 14 13 12 16 16 C 1.50698 * 109.46065 * 181.74809 * 14 13 12 17 17 C 1.38171 * 119.61043 * 4.72317 * 16 14 13 18 18 C 1.38781 * 119.14015 * 179.75526 * 17 16 14 19 19 Cl 1.73595 * 120.80236 * 180.28382 * 18 17 16 20 20 C 1.38821 * 118.39019 * 0.50993 * 18 17 16 21 21 C 1.38117 * 119.15006 * 359.75343 * 20 18 17 22 22 N 1.31873 * 119.60947 * 184.99860 * 16 14 13 23 23 C 1.53034 * 109.52233 * 61.74132 * 14 13 12 24 24 H 0.97001 * 119.99852 * 174.56688 * 1 2 3 25 25 H 1.08993 * 109.50328 * 302.38147 * 11 9 7 26 26 H 1.09002 * 109.49842 * 62.49984 * 11 9 7 27 27 H 1.08994 * 109.46166 * 179.19903 * 12 11 9 28 28 H 1.09003 * 109.46410 * 299.16717 * 12 11 9 29 29 H 1.00893 * 110.99823 * 174.15796 * 13 12 11 30 30 H 1.07997 * 120.42759 * 0.02562 * 17 16 14 31 31 H 1.08007 * 120.41957 * 179.73042 * 20 18 17 32 32 H 1.07999 * 119.61178 * 179.97438 * 21 20 18 33 33 H 1.08996 * 109.50421 * 180.88251 * 23 14 13 34 34 H 1.09002 * 109.50526 * 60.76115 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0779 -1.1978 -0.1188 9 6 1.2604 -2.4937 0.1676 10 1 0.3758 -2.3304 0.7833 11 6 2.1717 -3.5220 0.8434 12 6 1.4316 -4.8568 0.9552 13 7 1.0502 -5.3202 -0.3852 14 6 0.1372 -4.3714 -1.0352 15 1 -0.7523 -4.2427 -0.4184 16 6 -0.2620 -4.9047 -2.3870 17 6 0.1574 -6.1625 -2.7757 18 6 -0.2202 -6.6460 -4.0206 19 17 0.2762 -8.2231 -4.5496 20 6 -1.0004 -5.8360 -4.8344 21 6 -1.3762 -4.5874 -4.3790 22 7 -1.0029 -4.1631 -3.1871 23 6 0.8386 -3.0221 -1.2063 24 1 -0.4850 -0.8363 -0.0795 25 1 3.0745 -3.6553 0.2476 26 1 2.4408 -3.1706 1.8395 27 1 2.0828 -5.5950 1.4231 28 1 0.5360 -4.7258 1.5626 29 1 0.6452 -6.2435 -0.3468 30 1 0.7674 -6.7634 -2.1176 31 1 -1.3092 -6.1777 -5.8114 32 1 -1.9828 -3.9509 -5.0062 33 1 0.1554 -2.3136 -1.6746 34 1 1.7206 -3.1475 -1.8344 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260213862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:18 Heat of formation + Delta-G solvation = 18.325826 kcal Electronic energy + Delta-G solvation = -17869.867898 eV Core-core repulsion = 15020.720524 eV Total energy + Delta-G solvation = -2849.147375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39285 -37.90813 -36.79252 -33.73732 -32.42404 -31.94364 -30.29011 -29.07066 -25.15078 -23.85239 -23.53185 -21.81701 -21.06773 -18.96704 -17.55452 -16.62421 -16.46450 -15.69683 -15.43259 -14.47194 -13.98142 -13.72354 -13.67417 -13.59833 -13.42865 -12.68510 -12.46019 -12.13610 -11.96278 -11.80630 -11.12932 -11.04409 -10.75186 -10.52956 -10.48622 -10.06423 -9.70970 -9.48149 -9.40402 -9.15644 -9.03835 -8.47037 -8.29050 -8.03989 -6.29236 -3.99915 1.03512 1.08355 1.83448 3.47607 3.48639 3.67616 3.72092 4.08489 4.57996 4.61353 4.67165 4.94378 5.10675 5.33048 5.43656 5.53773 5.65848 5.72380 5.80199 5.84500 5.91443 6.11171 6.17661 6.44708 6.54485 6.59337 6.87540 6.92163 7.14279 7.31353 7.55661 7.63282 7.72388 8.05432 8.30429 8.51338 8.93809 9.71390 11.08845 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.004977 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.274146 B = 5624.442066 C = 6262.640557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 1.063 2.937 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.591 4.591 8 H 0.048 0.952 9 C 0.030 3.970 10 H 0.029 0.971 11 C -0.103 4.103 12 C 0.061 3.939 13 N -0.683 5.683 14 C 0.132 3.868 15 H 0.056 0.944 16 C 0.164 3.836 17 C -0.157 4.157 18 C 0.008 3.992 19 Cl -0.063 7.063 20 C -0.182 4.182 21 C 0.118 3.882 22 N -0.469 5.469 23 C -0.084 4.084 24 H 0.271 0.729 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.025 0.975 29 H 0.328 0.672 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 -14.502 -6.598 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.183 4.183 3 Si 0.892 3.108 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.629 4.629 8 H 0.066 0.934 9 C 0.012 3.988 10 H 0.047 0.953 11 C -0.141 4.141 12 C -0.067 4.067 13 N -0.315 5.315 14 C 0.022 3.978 15 H 0.073 0.927 16 C 0.026 3.974 17 C -0.178 4.178 18 C -0.027 4.027 19 Cl -0.034 7.034 20 C -0.203 4.203 21 C -0.040 4.040 22 N -0.178 5.178 23 C -0.123 4.123 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.146 0.854 30 H 0.170 0.830 31 H 0.159 0.841 32 H 0.181 0.819 33 H 0.086 0.914 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.767 -11.896 -6.576 13.707 hybrid contribution -0.284 -2.951 -0.138 2.968 sum -2.052 -14.847 -6.714 16.423 Atomic orbital electron populations 1.70773 1.06883 1.30973 1.45948 1.25775 0.96489 1.02468 0.93601 0.83641 0.75001 0.75729 0.76476 1.20869 1.21520 1.21540 1.21900 0.94709 0.91682 1.54649 0.93406 1.18927 0.95118 0.93575 0.91222 0.95322 1.21653 0.99230 0.92796 1.00436 1.22018 0.98429 0.98555 0.87733 1.60416 1.45159 1.04208 1.21737 1.20548 0.94323 0.94864 0.88093 0.92688 1.21448 0.90705 0.88930 0.96293 1.21949 1.02140 0.97890 0.95799 1.21296 0.98324 0.87794 0.95295 1.98376 1.90145 1.24678 1.90201 1.22038 1.00960 0.95925 1.01350 1.22815 0.96194 0.92830 0.92172 1.67461 1.10954 1.35180 1.04239 1.21842 0.98726 0.90234 1.01502 0.91779 0.92537 0.92661 0.91686 0.95706 0.85431 0.83041 0.84112 0.81885 0.91360 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.36 13.55 55.43 0.75 -26.61 16 2 C 0.02 0.60 5.45 -17.82 -0.10 0.51 16 3 Si 1.06 25.25 29.91 -169.99 -5.08 20.17 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.59 -16.47 8.31 -34.44 -0.29 -16.76 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.03 0.75 1.80 -91.65 -0.17 0.58 16 10 H 0.03 0.76 6.97 -51.93 -0.36 0.40 16 11 C -0.10 -2.14 5.36 -26.65 -0.14 -2.28 16 12 C 0.06 1.03 6.55 -3.83 -0.03 1.00 16 13 N -0.68 -11.03 5.69 -107.98 -0.61 -11.65 16 14 C 0.13 2.44 2.91 -68.88 -0.20 2.24 16 15 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.16 2.78 6.17 -82.60 -0.51 2.27 16 17 C -0.16 -2.24 9.00 -39.41 -0.35 -2.60 16 18 C 0.01 0.10 6.37 -39.16 -0.25 -0.15 16 19 Cl -0.06 -0.69 29.02 -51.86 -1.50 -2.20 16 20 C -0.18 -2.15 9.94 -39.41 -0.39 -2.54 16 21 C 0.12 1.58 11.18 -17.56 -0.20 1.38 16 22 N -0.47 -8.10 9.90 -9.50 -0.09 -8.20 16 23 C -0.08 -1.92 4.41 -26.65 -0.12 -2.04 16 24 H 0.27 8.12 6.42 -40.82 -0.26 7.86 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.33 4.35 7.27 -39.30 -0.29 4.06 16 30 H 0.15 1.97 6.23 -52.49 -0.33 1.64 16 31 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.07 1.73 7.54 -51.93 -0.39 1.34 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 294.07 15.07 4.43 4.43 Total: -1.00 -30.34 294.07 -9.07 -39.41 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.22 Total: 3.03 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.74 Total: -18.38 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.04 Total: -46.46 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.34 -9.07 -39.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.739 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds