Wall clock time and date at job start Mon Mar 30 2020 08:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86811 * 119.99949 * 2 1 4 4 H 1.48501 * 109.46733 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47033 * 119.99791 * 3 2 1 6 6 H 1.48491 * 109.47121 * 239.99975 * 3 2 1 7 7 C 1.37876 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99962 * 172.67271 * 7 2 1 9 9 C 1.50697 * 119.99933 * 352.67130 * 7 2 1 10 10 H 1.08999 * 109.52130 * 329.37190 * 9 7 2 11 11 C 1.53120 * 109.52525 * 209.23867 * 9 7 2 12 12 C 1.53034 * 109.27939 * 182.43971 * 11 9 7 13 13 N 1.46856 * 109.52251 * 59.18067 * 12 11 9 14 14 C 1.46849 * 111.19823 * 298.25829 * 13 12 11 15 15 H 1.08998 * 109.46166 * 301.72832 * 14 13 12 16 16 C 1.50698 * 109.46065 * 181.74809 * 14 13 12 17 17 C 1.38171 * 119.61043 * 4.72317 * 16 14 13 18 18 C 1.38781 * 119.14015 * 179.75526 * 17 16 14 19 19 Cl 1.73595 * 120.80236 * 180.28382 * 18 17 16 20 20 C 1.38821 * 118.39019 * 0.50993 * 18 17 16 21 21 C 1.38117 * 119.15006 * 359.75343 * 20 18 17 22 22 N 1.31873 * 119.60947 * 184.99860 * 16 14 13 23 23 C 1.53034 * 109.52233 * 61.74132 * 14 13 12 24 24 H 0.97001 * 119.99852 * 174.56688 * 1 2 3 25 25 H 1.08993 * 109.50328 * 302.38147 * 11 9 7 26 26 H 1.09002 * 109.49842 * 62.49984 * 11 9 7 27 27 H 1.08994 * 109.46166 * 179.19903 * 12 11 9 28 28 H 1.09003 * 109.46410 * 299.16717 * 12 11 9 29 29 H 1.00893 * 110.99823 * 174.15796 * 13 12 11 30 30 H 1.07997 * 120.42759 * 0.02562 * 17 16 14 31 31 H 1.08007 * 120.41957 * 179.73042 * 20 18 17 32 32 H 1.07999 * 119.61178 * 179.97438 * 21 20 18 33 33 H 1.08996 * 109.50421 * 180.88251 * 23 14 13 34 34 H 1.09002 * 109.50526 * 60.76115 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0779 -1.1978 -0.1188 9 6 1.2604 -2.4937 0.1676 10 1 0.3758 -2.3304 0.7833 11 6 2.1717 -3.5220 0.8434 12 6 1.4316 -4.8568 0.9552 13 7 1.0502 -5.3202 -0.3852 14 6 0.1372 -4.3714 -1.0352 15 1 -0.7523 -4.2427 -0.4184 16 6 -0.2620 -4.9047 -2.3870 17 6 0.1574 -6.1625 -2.7757 18 6 -0.2202 -6.6460 -4.0206 19 17 0.2762 -8.2231 -4.5496 20 6 -1.0004 -5.8360 -4.8344 21 6 -1.3762 -4.5874 -4.3790 22 7 -1.0029 -4.1631 -3.1871 23 6 0.8386 -3.0221 -1.2063 24 1 -0.4850 -0.8363 -0.0795 25 1 3.0745 -3.6553 0.2476 26 1 2.4408 -3.1706 1.8395 27 1 2.0828 -5.5950 1.4231 28 1 0.5360 -4.7258 1.5626 29 1 0.6452 -6.2435 -0.3468 30 1 0.7674 -6.7634 -2.1176 31 1 -1.3092 -6.1777 -5.8114 32 1 -1.9828 -3.9509 -5.0062 33 1 0.1554 -2.3136 -1.6746 34 1 1.7206 -3.1475 -1.8344 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260213862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:17 Heat of formation + Delta-G solvation = -1.074401 kcal Electronic energy + Delta-G solvation = -17870.709155 eV Core-core repulsion = 15020.720524 eV Total energy + Delta-G solvation = -2849.988632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.56811 -39.42753 -37.75599 -35.64091 -33.67833 -33.23313 -32.07164 -30.44367 -27.06655 -25.28445 -24.77387 -23.45084 -22.50519 -20.68592 -19.07707 -18.29360 -17.65198 -17.03050 -16.54491 -15.84354 -15.63461 -15.51630 -15.22028 -14.83292 -14.72758 -14.19674 -13.95707 -13.57204 -13.21125 -13.14618 -12.98249 -12.60186 -12.30700 -12.20287 -12.00874 -11.95050 -11.50875 -11.07261 -10.64572 -10.55801 -10.52037 -10.33696 -10.07108 -9.50223 -8.57369 -6.28016 -0.05104 0.02705 0.85532 1.52700 1.60475 1.79720 2.57813 2.60805 2.83959 3.20719 3.43308 3.64927 3.89451 4.01158 4.15590 4.16118 4.25888 4.30528 4.42098 4.60952 4.69053 4.70738 4.80797 4.85439 4.90759 5.01596 5.12105 5.30116 5.48331 5.57688 5.67270 5.98474 6.14443 6.26314 6.44838 6.68539 6.94379 7.51317 8.80596 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.004977 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.274146 B = 5624.442066 C = 6262.640557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.031 4.031 3 Si 1.109 2.891 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.605 4.605 8 H 0.042 0.958 9 C 0.023 3.977 10 H -0.001 1.001 11 C -0.098 4.098 12 C 0.068 3.932 13 N -0.675 5.675 14 C 0.144 3.856 15 H 0.039 0.961 16 C 0.138 3.862 17 C -0.153 4.153 18 C 0.003 3.997 19 Cl -0.041 7.041 20 C -0.162 4.162 21 C 0.109 3.891 22 N -0.512 5.512 23 C -0.066 4.066 24 H 0.257 0.743 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.103 0.897 28 H 0.025 0.975 29 H 0.351 0.649 30 H 0.164 0.836 31 H 0.177 0.823 32 H 0.190 0.810 33 H 0.030 0.970 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -16.534 -7.616 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.229 4.229 3 Si 0.931 3.069 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.643 4.643 8 H 0.060 0.940 9 C 0.004 3.996 10 H 0.017 0.983 11 C -0.136 4.136 12 C -0.061 4.061 13 N -0.309 5.309 14 C 0.033 3.967 15 H 0.057 0.943 16 C 0.000 4.000 17 C -0.173 4.173 18 C -0.032 4.032 19 Cl -0.012 7.012 20 C -0.183 4.183 21 C -0.049 4.049 22 N -0.222 5.222 23 C -0.105 4.105 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.044 0.956 29 H 0.172 0.828 30 H 0.181 0.819 31 H 0.195 0.805 32 H 0.207 0.793 33 H 0.049 0.951 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.105 -13.976 -7.588 15.942 hybrid contribution -0.496 -2.409 0.082 2.461 sum -1.601 -16.386 -7.506 18.094 Atomic orbital electron populations 1.70890 1.07857 1.30201 1.48404 1.27188 0.96560 1.06236 0.92898 0.83049 0.74237 0.71816 0.77780 1.21048 1.19464 1.19989 1.22307 0.94639 0.93497 1.53863 0.94006 1.18939 0.94492 0.93986 0.92141 0.98276 1.21520 0.98466 0.94036 0.99589 1.21959 0.98689 0.97218 0.88239 1.60311 1.44588 1.04782 1.21253 1.20132 0.93371 0.93347 0.89841 0.94331 1.21117 0.92768 0.90384 0.95701 1.21953 1.01801 0.96853 0.96721 1.21411 0.98093 0.88820 0.94890 1.98388 1.89918 1.23043 1.89850 1.22407 0.98901 0.94679 1.02272 1.23314 0.96259 0.94075 0.91240 1.67367 1.12097 1.36707 1.06057 1.21404 0.97340 0.92345 0.99402 0.93243 0.93106 0.92796 0.87844 0.95649 0.82806 0.81857 0.80537 0.79282 0.95122 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.74 13.55 21.45 0.29 -58.45 16 2 C -0.03 -1.80 5.45 84.66 0.46 -1.34 16 3 Si 1.11 51.55 29.91 68.60 2.05 53.60 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.61 -34.88 8.31 25.60 0.21 -34.67 16 8 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 9 C 0.02 1.19 1.80 -11.46 -0.02 1.17 16 10 H 0.00 -0.06 6.97 -2.39 -0.02 -0.07 16 11 C -0.10 -4.08 5.36 30.65 0.16 -3.92 16 12 C 0.07 2.16 6.55 86.32 0.57 2.73 16 13 N -0.68 -20.97 5.69 -495.55 -2.82 -23.79 16 14 C 0.14 5.44 2.91 44.19 0.13 5.57 16 15 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 16 C 0.14 4.66 6.17 42.54 0.26 4.92 16 17 C -0.15 -4.11 9.00 22.38 0.20 -3.90 16 18 C 0.00 0.06 6.37 22.54 0.14 0.21 16 19 Cl -0.04 -0.77 29.02 -2.72 -0.08 -0.85 16 20 C -0.16 -3.35 9.94 22.38 0.22 -3.13 16 21 C 0.11 2.76 11.18 84.65 0.95 3.70 16 22 N -0.51 -17.90 9.90 -183.95 -1.82 -19.72 16 23 C -0.07 -3.16 4.41 30.65 0.14 -3.02 16 24 H 0.26 16.42 6.42 -92.71 -0.60 15.82 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.35 8.46 7.27 -89.70 -0.65 7.81 16 30 H 0.16 3.85 6.23 -2.91 -0.02 3.83 16 31 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.03 1.66 7.54 -2.39 -0.02 1.64 16 34 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -69.12 294.07 1.68 -67.44 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.63 Total: 13.45 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.42 Total: -31.68 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -4.35 Total: -101.96 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -69.12 1.68 -67.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.366 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds