Wall clock time and date at job start Mon Mar 30 2020 08:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48498 * 109.47391 * 270.00346 * 3 2 1 5 5 H 1.48504 * 109.47066 * 30.00399 * 3 2 1 6 6 H 1.48507 * 109.47152 * 150.00194 * 3 2 1 7 7 C 1.37872 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00322 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99906 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.57445 * 60.15913 * 9 7 2 11 11 C 1.53123 * 109.52244 * 300.00011 * 9 7 2 12 12 C 1.53039 * 109.31189 * 297.77266 * 11 9 7 13 13 N 1.46856 * 109.51787 * 300.79882 * 12 11 9 14 14 C 1.46846 * 111.19871 * 61.74404 * 13 12 11 15 15 H 1.09004 * 109.45906 * 58.25833 * 14 13 12 16 16 C 1.50696 * 109.46446 * 178.23649 * 14 13 12 17 17 C 1.38164 * 119.61511 * 245.00101 * 16 14 13 18 18 C 1.38777 * 119.14806 * 179.97438 * 17 16 14 19 19 Cl 1.73595 * 120.80674 * 179.97438 * 18 17 16 20 20 C 1.38825 * 118.39001 * 0.02562 * 18 17 16 21 21 C 1.38129 * 119.14582 * 359.97438 * 20 18 17 22 22 N 1.31886 * 119.60800 * 64.72967 * 16 14 13 23 23 C 1.53030 * 109.52435 * 298.25760 * 14 13 12 24 24 H 0.96996 * 119.99839 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50371 * 177.80816 * 11 9 7 26 26 H 1.09003 * 109.50070 * 57.72976 * 11 9 7 27 27 H 1.09000 * 109.46148 * 60.81334 * 12 11 9 28 28 H 1.09001 * 109.46317 * 180.79820 * 12 11 9 29 29 H 1.00895 * 111.00317 * 297.64741 * 13 12 11 30 30 H 1.08003 * 120.42946 * 359.97438 * 17 16 14 31 31 H 1.08002 * 120.42338 * 179.97438 * 20 18 17 32 32 H 1.08001 * 119.60754 * 179.97438 * 21 20 18 33 33 H 1.08997 * 109.50569 * 179.12357 * 23 14 13 34 34 H 1.09007 * 109.50504 * 299.19535 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8771 -0.6831 0.8896 11 6 4.0228 -0.4720 -1.2510 12 6 3.5572 -1.2275 -2.4978 13 7 4.0732 -2.6019 -2.4600 14 6 3.5579 -3.3306 -1.2939 15 1 2.4684 -3.3422 -1.3253 16 6 4.0760 -4.7456 -1.3169 17 6 3.1905 -5.7944 -1.4744 18 6 3.6781 -7.0935 -1.4947 19 17 2.6042 -8.4433 -1.6896 20 6 5.0456 -7.2875 -1.3543 21 6 5.8686 -6.1889 -1.2008 22 7 5.3699 -4.9678 -1.1917 23 6 4.0234 -2.6379 -0.0112 24 1 -0.4850 0.8400 0.0004 25 1 5.1121 -0.4380 -1.2317 26 1 3.6273 0.5435 -1.2720 27 1 2.4677 -1.2491 -2.5236 28 1 3.9317 -0.7235 -3.3888 29 1 5.0820 -2.6099 -2.4745 30 1 2.1323 -5.6057 -1.5804 31 1 5.4604 -8.2846 -1.3650 32 1 6.9335 -6.3312 -1.0906 33 1 3.6279 -3.1700 0.8539 34 1 5.1128 -2.6386 0.0281 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260213865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:22 Heat of formation + Delta-G solvation = 25.513074 kcal Electronic energy + Delta-G solvation = -18054.763643 eV Core-core repulsion = 15205.927931 eV Total energy + Delta-G solvation = -2848.835712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36772 -38.11709 -36.75646 -33.25376 -32.14657 -31.96030 -30.79972 -29.17338 -25.10030 -24.14076 -23.55925 -22.15378 -21.08599 -19.09332 -17.18611 -16.52165 -16.32256 -15.75964 -15.01589 -14.42686 -14.23964 -14.02942 -13.72541 -13.59965 -12.94907 -12.76546 -12.52664 -12.28291 -12.02458 -11.79954 -11.36595 -11.11902 -10.89051 -10.65547 -10.16033 -10.00812 -9.98271 -9.49575 -9.45629 -9.26239 -9.06738 -8.94293 -8.56483 -7.64997 -6.09778 -4.08413 1.03918 1.08832 1.87086 3.24457 3.36481 3.37976 3.71376 4.32720 4.39040 4.61053 4.85411 5.00312 5.10868 5.22626 5.38635 5.58329 5.67070 5.81731 5.90217 5.98011 6.06965 6.13370 6.21223 6.39873 6.58712 6.60572 6.66307 6.89353 6.97133 7.08980 7.33758 7.64308 7.76065 8.00833 8.03388 8.48237 8.92412 9.53206 11.02937 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.030610 B = 0.005200 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.526936 B = 5383.531485 C = 5893.352470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.010 3.990 10 H 0.028 0.972 11 C -0.156 4.156 12 C 0.070 3.930 13 N -0.674 5.674 14 C 0.143 3.857 15 H 0.109 0.891 16 C 0.170 3.830 17 C -0.152 4.152 18 C 0.009 3.991 19 Cl -0.061 7.061 20 C -0.180 4.180 21 C 0.113 3.887 22 N -0.473 5.473 23 C -0.118 4.118 24 H 0.263 0.737 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.334 0.666 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.161 0.839 33 H 0.056 0.944 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.708 -12.556 -3.750 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.009 4.009 10 H 0.046 0.954 11 C -0.195 4.195 12 C -0.059 4.059 13 N -0.303 5.303 14 C 0.032 3.968 15 H 0.127 0.873 16 C 0.032 3.968 17 C -0.173 4.173 18 C -0.025 4.025 19 Cl -0.032 7.032 20 C -0.201 4.201 21 C -0.045 4.045 22 N -0.183 5.183 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.151 0.849 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.178 0.822 33 H 0.074 0.926 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.505 -12.098 -4.114 15.926 hybrid contribution 0.240 0.472 0.653 0.841 sum 9.745 -11.626 -3.461 15.560 Atomic orbital electron populations 1.69895 1.06220 1.26906 1.50714 1.24993 0.94620 0.98914 0.94496 0.86872 0.79846 0.83809 0.77832 1.20547 1.22653 1.19354 1.20972 0.88520 0.94323 1.50873 0.90731 1.19229 0.97204 0.91316 0.93143 0.95403 1.22544 0.97799 0.99927 0.99205 1.21890 1.02192 0.86370 0.95440 1.60789 1.13561 1.15768 1.40188 1.20534 1.00502 0.85242 0.90476 0.87317 1.21575 0.87977 0.96424 0.90782 1.22018 1.02719 0.90663 1.01866 1.21283 0.91440 0.89143 1.00683 1.98383 1.64735 1.44535 1.95543 1.22011 0.92037 1.01625 1.04406 1.22759 1.00248 0.86929 0.94533 1.67498 1.14850 1.24027 1.11912 1.22003 0.98921 0.98093 0.96751 0.92695 0.94541 0.93130 0.89070 0.92550 0.84936 0.83494 0.84204 0.82172 0.92568 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 21.55 24.39 -169.99 -4.15 17.40 16 4 H -0.28 -6.58 6.85 56.52 0.39 -6.19 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.51 -13.43 7.32 -34.44 -0.25 -13.69 16 8 H 0.07 2.12 7.12 -52.49 -0.37 1.74 16 9 C 0.01 0.23 2.20 -91.60 -0.20 0.03 16 10 H 0.03 0.67 7.21 -51.93 -0.37 0.29 16 11 C -0.16 -3.25 5.08 -26.65 -0.14 -3.38 16 12 C 0.07 1.36 6.35 -3.83 -0.02 1.33 16 13 N -0.67 -12.06 6.49 -107.98 -0.70 -12.76 16 14 C 0.14 2.61 2.53 -68.88 -0.17 2.44 16 15 H 0.11 2.21 6.52 -51.93 -0.34 1.87 16 16 C 0.17 2.74 5.72 -82.60 -0.47 2.27 16 17 C -0.15 -2.21 9.53 -39.41 -0.38 -2.59 16 18 C 0.01 0.12 6.37 -39.16 -0.25 -0.13 16 19 Cl -0.06 -0.70 29.02 -51.86 -1.50 -2.20 16 20 C -0.18 -1.99 9.94 -39.40 -0.39 -2.38 16 21 C 0.11 1.33 11.18 -17.56 -0.20 1.13 16 22 N -0.47 -7.09 9.76 -9.49 -0.09 -7.18 16 23 C -0.12 -2.33 4.69 -26.61 -0.12 -2.45 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.13 3.25 -51.93 -0.17 0.96 16 27 H 0.09 2.01 7.31 -51.93 -0.38 1.63 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.33 5.65 8.68 -39.29 -0.34 5.31 16 30 H 0.15 2.07 7.95 -52.48 -0.42 1.65 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.94 7.93 -51.92 -0.41 0.53 16 LS Contribution 285.29 15.07 4.30 4.30 Total: -1.00 -28.61 285.29 -8.17 -36.78 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.10 Total: 5.07 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.69 Total: -15.55 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.02 Total: -45.80 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.15 Total: 17.40 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.61 -8.17 -36.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.295 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds