Wall clock time and date at job start Mon Mar 30 2020 08:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48498 * 109.47391 * 270.00346 * 3 2 1 5 5 H 1.48504 * 109.47066 * 30.00399 * 3 2 1 6 6 H 1.48507 * 109.47152 * 150.00194 * 3 2 1 7 7 C 1.37872 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00322 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99906 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.57445 * 60.15913 * 9 7 2 11 11 C 1.53123 * 109.52244 * 300.00011 * 9 7 2 12 12 C 1.53039 * 109.31189 * 297.77266 * 11 9 7 13 13 N 1.46856 * 109.51787 * 300.79882 * 12 11 9 14 14 C 1.46846 * 111.19871 * 61.74404 * 13 12 11 15 15 H 1.09004 * 109.45906 * 58.25833 * 14 13 12 16 16 C 1.50696 * 109.46446 * 178.23649 * 14 13 12 17 17 C 1.38164 * 119.61511 * 245.00101 * 16 14 13 18 18 C 1.38777 * 119.14806 * 179.97438 * 17 16 14 19 19 Cl 1.73595 * 120.80674 * 179.97438 * 18 17 16 20 20 C 1.38825 * 118.39001 * 0.02562 * 18 17 16 21 21 C 1.38129 * 119.14582 * 359.97438 * 20 18 17 22 22 N 1.31886 * 119.60800 * 64.72967 * 16 14 13 23 23 C 1.53030 * 109.52435 * 298.25760 * 14 13 12 24 24 H 0.96996 * 119.99839 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50371 * 177.80816 * 11 9 7 26 26 H 1.09003 * 109.50070 * 57.72976 * 11 9 7 27 27 H 1.09000 * 109.46148 * 60.81334 * 12 11 9 28 28 H 1.09001 * 109.46317 * 180.79820 * 12 11 9 29 29 H 1.00895 * 111.00317 * 297.64741 * 13 12 11 30 30 H 1.08003 * 120.42946 * 359.97438 * 17 16 14 31 31 H 1.08002 * 120.42338 * 179.97438 * 20 18 17 32 32 H 1.08001 * 119.60754 * 179.97438 * 21 20 18 33 33 H 1.08997 * 109.50569 * 179.12357 * 23 14 13 34 34 H 1.09007 * 109.50504 * 299.19535 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8771 -0.6831 0.8896 11 6 4.0228 -0.4720 -1.2510 12 6 3.5572 -1.2275 -2.4978 13 7 4.0732 -2.6019 -2.4600 14 6 3.5579 -3.3306 -1.2939 15 1 2.4684 -3.3422 -1.3253 16 6 4.0760 -4.7456 -1.3169 17 6 3.1905 -5.7944 -1.4744 18 6 3.6781 -7.0935 -1.4947 19 17 2.6042 -8.4433 -1.6896 20 6 5.0456 -7.2875 -1.3543 21 6 5.8686 -6.1889 -1.2008 22 7 5.3699 -4.9678 -1.1917 23 6 4.0234 -2.6379 -0.0112 24 1 -0.4850 0.8400 0.0004 25 1 5.1121 -0.4380 -1.2317 26 1 3.6273 0.5435 -1.2720 27 1 2.4677 -1.2491 -2.5236 28 1 3.9317 -0.7235 -3.3888 29 1 5.0820 -2.6099 -2.4745 30 1 2.1323 -5.6057 -1.5804 31 1 5.4604 -8.2846 -1.3650 32 1 6.9335 -6.3312 -1.0906 33 1 3.6279 -3.1700 0.8539 34 1 5.1128 -2.6386 0.0281 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260213865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:22 Heat of formation + Delta-G solvation = 6.071630 kcal Electronic energy + Delta-G solvation = -18055.606687 eV Core-core repulsion = 15205.927931 eV Total energy + Delta-G solvation = -2849.678756 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.49550 -39.63118 -37.72686 -35.04403 -33.55998 -33.06422 -32.59025 -30.51535 -27.07293 -25.43487 -24.59456 -23.80988 -22.41713 -20.88442 -18.39894 -18.26953 -17.56124 -17.02860 -16.60037 -15.75018 -15.62491 -15.53051 -15.16814 -14.73274 -14.71769 -14.43939 -14.03702 -13.63527 -13.19481 -13.10855 -13.08133 -12.68603 -12.36391 -12.09548 -11.92512 -11.78101 -11.71841 -11.15730 -10.88098 -10.66312 -10.51052 -10.46567 -10.12286 -9.16843 -8.25556 -6.27160 0.00788 0.07369 0.90125 1.30534 1.36666 1.45903 2.34399 2.65686 3.09033 3.20672 3.51078 3.73560 3.88263 4.04315 4.12643 4.21795 4.32166 4.41835 4.52290 4.62473 4.69318 4.74824 4.90056 4.92684 4.97475 5.01489 5.21350 5.27174 5.37768 5.53603 5.60250 5.75753 6.10899 6.33755 6.62991 6.77614 6.95778 7.37174 8.90666 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.030610 B = 0.005200 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.526936 B = 5383.531485 C = 5893.352470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.016 3.984 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.305 1.305 6 H -0.253 1.253 7 C -0.500 4.500 8 H 0.037 0.963 9 C 0.005 3.995 10 H 0.020 0.980 11 C -0.154 4.154 12 C 0.075 3.925 13 N -0.667 5.667 14 C 0.151 3.849 15 H 0.074 0.926 16 C 0.151 3.849 17 C -0.168 4.168 18 C 0.004 3.996 19 Cl -0.050 7.050 20 C -0.163 4.163 21 C 0.115 3.885 22 N -0.489 5.489 23 C -0.108 4.108 24 H 0.263 0.737 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.345 0.655 30 H 0.137 0.863 31 H 0.176 0.824 32 H 0.201 0.799 33 H 0.042 0.958 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.953 -13.551 -4.376 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.181 4.181 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.233 1.233 6 H -0.178 1.178 7 C -0.538 4.538 8 H 0.056 0.944 9 C -0.014 4.014 10 H 0.038 0.962 11 C -0.192 4.192 12 C -0.054 4.054 13 N -0.296 5.296 14 C 0.041 3.959 15 H 0.093 0.907 16 C 0.014 3.986 17 C -0.190 4.190 18 C -0.031 4.031 19 Cl -0.021 7.021 20 C -0.183 4.183 21 C -0.042 4.042 22 N -0.199 5.199 23 C -0.148 4.148 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.194 0.806 32 H 0.218 0.782 33 H 0.061 0.939 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.771 -13.105 -4.747 18.905 hybrid contribution -0.765 0.580 0.863 1.291 sum 12.006 -12.525 -3.885 17.780 Atomic orbital electron populations 1.70043 1.08056 1.27699 1.53127 1.25761 0.95239 1.02534 0.94579 0.85917 0.78919 0.79368 0.78596 1.19015 1.23283 1.17772 1.21173 0.90755 0.92755 1.49075 0.94445 1.19235 0.94470 0.93685 0.93996 0.96209 1.22492 0.99470 0.98906 0.98375 1.21782 1.00180 0.87342 0.96110 1.60720 1.14239 1.14709 1.39942 1.20209 0.98687 0.87198 0.89854 0.90742 1.21081 0.89020 0.95095 0.93372 1.21960 1.02261 0.91700 1.03040 1.21397 0.92551 0.88662 1.00486 1.98388 1.64712 1.43593 1.95452 1.22429 0.90913 1.03258 1.01689 1.23440 1.02096 0.85838 0.92865 1.67438 1.13912 1.26030 1.12546 1.21877 0.99628 0.96139 0.97141 0.92808 0.91592 0.94256 0.92645 0.89771 0.83641 0.84509 0.80628 0.78211 0.93875 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 2 C 0.02 0.89 5.45 84.65 0.46 1.36 16 3 Si 0.94 44.67 24.39 68.60 1.67 46.35 16 4 H -0.26 -11.81 6.85 99.48 0.68 -11.13 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 7 C -0.50 -27.42 7.32 25.60 0.19 -27.23 16 8 H 0.04 2.28 7.12 -2.91 -0.02 2.26 16 9 C 0.01 0.23 2.20 -11.43 -0.03 0.20 16 10 H 0.02 0.93 7.21 -2.39 -0.02 0.91 16 11 C -0.15 -6.14 5.08 30.65 0.16 -5.99 16 12 C 0.08 2.85 6.35 86.32 0.55 3.40 16 13 N -0.67 -23.26 6.49 -495.55 -3.22 -26.48 16 14 C 0.15 5.61 2.53 44.19 0.11 5.73 16 15 H 0.07 3.25 6.52 -2.38 -0.02 3.23 16 16 C 0.15 4.79 5.72 42.53 0.24 5.04 16 17 C -0.17 -4.93 9.53 22.38 0.21 -4.71 16 18 C 0.00 0.09 6.37 22.54 0.14 0.23 16 19 Cl -0.05 -1.08 29.02 -2.72 -0.08 -1.15 16 20 C -0.16 -2.99 9.94 22.38 0.22 -2.76 16 21 C 0.12 2.27 11.18 84.66 0.95 3.21 16 22 N -0.49 -13.51 9.76 -183.95 -1.80 -15.31 16 23 C -0.11 -4.26 4.69 30.67 0.14 -4.12 16 24 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.04 1.67 3.25 -2.39 -0.01 1.66 16 27 H 0.05 2.50 7.31 -2.39 -0.02 2.48 16 28 H 0.08 2.72 8.14 -2.39 -0.02 2.71 16 29 H 0.35 10.88 8.68 -89.70 -0.78 10.10 16 30 H 0.14 4.12 7.95 -2.91 -0.02 4.10 16 31 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 2.43 7.93 -2.38 -0.02 2.41 16 Total: -1.00 -64.01 285.29 0.50 -63.51 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.26 Total: 16.98 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 3.35 Total: -25.64 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.71 Total: -100.05 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.67 Total: 46.35 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.15 kcal Total: -64.01 0.50 -63.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.585 kcal (2) G-P(sol) polarization free energy of solvation -64.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds