Wall clock time and date at job start Mon Mar 30 2020 07:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76201 * 103.00080 * 2 1 4 4 C 1.38955 * 120.05109 * 0.02562 * 3 2 1 5 5 C 1.38081 * 119.93973 * 179.97438 * 4 3 2 6 6 C 1.38501 * 120.05777 * 0.02562 * 5 4 3 7 7 F 1.35102 * 119.94439 * 180.27814 * 6 5 4 8 8 C 1.38457 * 120.10866 * 0.02562 * 6 5 4 9 9 C 1.50700 * 119.97132 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47308 * 0.02562 * 9 8 6 11 11 C 1.50701 * 109.46990 * 239.99495 * 9 8 6 12 12 H 1.07997 * 120.00055 * 275.65526 * 11 9 8 13 13 C 1.37881 * 119.99702 * 95.65787 * 11 9 8 14 14 N 1.31517 * 120.00061 * 6.11041 * 13 11 9 15 15 Si 1.86796 * 119.99865 * 186.11489 * 13 11 9 16 16 H 1.48503 * 109.47411 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47083 * 119.99589 * 15 13 11 18 18 H 1.48495 * 109.47340 * 239.99782 * 15 13 11 19 19 C 1.53006 * 109.47138 * 119.99727 * 9 8 6 20 20 C 1.53000 * 117.49867 * 254.06389 * 19 9 8 21 21 C 1.53002 * 117.49811 * 185.40391 * 19 9 8 22 22 C 1.38124 * 120.05549 * 359.97195 * 8 6 5 23 23 H 1.09001 * 109.46688 * 60.00136 * 1 2 3 24 24 H 1.09006 * 109.46813 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47234 * 299.99760 * 1 2 3 26 26 H 1.07994 * 120.03492 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.97088 * 180.02562 * 5 4 3 28 28 H 0.96993 * 119.99680 * 180.02562 * 14 13 11 29 29 H 1.09003 * 115.54971 * 39.73796 * 19 9 8 30 30 H 1.09002 * 117.49581 * 0.02562 * 20 19 9 31 31 H 1.09003 * 117.49545 * 145.01625 * 20 19 9 32 32 H 1.08997 * 117.49676 * 214.97765 * 21 19 9 33 33 H 1.08999 * 117.49837 * 359.97438 * 21 19 9 34 34 H 1.08000 * 120.02629 * 180.02562 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1950 2.6654 0.0005 5 6 1.5083 4.0102 0.0011 6 6 2.8331 4.4139 0.0005 7 9 3.1370 5.7303 0.0067 8 6 3.8466 3.4706 -0.0011 9 6 5.2871 3.9133 -0.0022 10 1 5.3326 5.0023 -0.0011 11 6 5.9748 3.3824 -1.2337 12 1 6.3798 2.3813 -1.2368 13 6 6.0868 4.1750 -2.3564 14 7 5.7026 5.4321 -2.3149 15 14 6.7842 3.4631 -3.9363 16 1 7.1400 2.0373 -3.7222 17 1 5.7686 3.5636 -5.0151 18 1 7.9988 4.2225 -4.3276 19 6 5.9878 3.3729 1.2460 20 6 6.2974 4.3660 2.3681 21 6 7.4299 3.8189 1.4956 22 6 3.5385 2.1242 -0.0016 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.1618 2.3512 0.0005 27 1 0.7195 4.7479 0.0019 28 1 5.7811 5.9895 -3.1048 29 1 5.7184 2.3566 1.5335 30 1 6.0015 5.4042 2.2171 31 1 6.2319 4.0029 3.3937 32 1 8.1091 3.0961 1.9476 33 1 7.8797 4.4969 0.7702 34 1 4.3294 1.3888 -0.0024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:10 Heat of formation + Delta-G solvation = -7.568721 kcal Electronic energy + Delta-G solvation = -17958.668389 eV Core-core repulsion = 15090.521888 eV Total energy + Delta-G solvation = -2868.146502 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.89488 -38.50442 -36.51628 -33.06029 -31.28615 -29.99273 -29.02200 -27.01854 -23.78771 -22.36109 -21.52253 -21.35564 -19.13101 -17.07324 -16.66154 -16.44843 -15.48513 -14.82890 -14.64749 -14.53564 -14.43504 -13.69864 -13.56669 -13.17264 -12.83667 -12.51900 -12.45018 -12.20727 -11.86563 -11.41670 -11.19564 -10.99275 -10.72348 -10.58387 -10.40917 -10.02926 -9.99853 -9.49290 -9.21995 -8.93981 -8.78920 -8.51047 -7.97510 -6.95022 -6.08934 -4.12730 1.72350 1.78074 1.92896 2.66591 3.27177 3.35803 3.39761 4.20770 4.38694 4.78803 5.01765 5.07527 5.08197 5.22225 5.32376 5.47143 5.61254 5.65714 5.85721 5.91405 6.02536 6.11548 6.33283 6.38848 6.46895 6.56494 6.73835 6.80731 6.87465 7.01715 7.04698 7.27450 7.63209 7.75139 7.85755 8.25889 8.94633 9.50011 10.98179 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.007483 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.583557 B = 3740.972939 C = 4157.630364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.132 6.132 3 C -0.103 4.103 4 C -0.135 4.135 5 C -0.146 4.146 6 C 0.094 3.906 7 F -0.133 7.133 8 C -0.035 4.035 9 C 0.087 3.913 10 H 0.080 0.920 11 C -0.502 4.502 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.879 5.879 15 Si 0.889 3.111 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.120 4.120 20 C -0.201 4.201 21 C -0.167 4.167 22 C -0.065 4.065 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.263 0.737 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 -6.078 5.717 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.108 5.892 3 C -0.215 4.215 4 C -0.159 4.159 5 C -0.167 4.167 6 C 0.073 3.927 7 F -0.111 7.111 8 C -0.039 4.039 9 C 0.068 3.932 10 H 0.099 0.901 11 C -0.539 4.539 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.516 5.516 15 Si 0.717 3.283 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.139 4.139 20 C -0.238 4.238 21 C -0.204 4.204 22 C -0.088 4.088 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.099 0.901 26 H 0.137 0.863 27 H 0.143 0.857 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.369 -6.903 5.598 11.545 hybrid contribution -0.574 1.049 -1.073 1.606 sum -7.942 -5.854 4.525 10.855 Atomic orbital electron populations 1.23589 0.95728 1.06375 1.05377 1.85319 1.05391 1.04832 1.93669 1.21529 0.96891 0.95276 1.07789 1.20624 0.97586 0.92120 1.05547 1.20848 0.94919 0.96178 1.04716 1.17640 0.92835 0.78432 1.03817 1.91476 1.93928 1.31992 1.93709 1.20827 0.98446 0.91499 0.93100 1.17723 0.84746 0.99493 0.91218 0.90143 1.20899 1.36190 1.00473 0.96374 0.92146 1.25017 0.94940 0.94656 0.99004 1.69948 1.46798 1.05501 1.29340 0.86570 0.78669 0.79553 0.83526 1.19470 1.20941 1.20949 1.22446 0.97763 0.97119 0.96542 1.23006 1.05832 0.99715 0.95249 1.22709 0.91708 1.03586 1.02408 1.20437 0.93289 0.95632 0.99420 0.90027 0.87984 0.90078 0.86299 0.85741 0.92741 0.89769 0.89466 0.90489 0.90488 0.88569 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.15 101.05 0.92 -0.54 16 2 S -0.13 -1.95 22.56 -107.50 -2.43 -4.38 16 3 C -0.10 -1.83 6.11 -39.06 -0.24 -2.07 16 4 C -0.14 -2.25 9.36 -39.37 -0.37 -2.61 16 5 C -0.15 -2.65 10.02 -39.54 -0.40 -3.05 16 6 C 0.09 2.05 7.24 -39.40 -0.29 1.76 16 7 F -0.13 -3.10 16.18 2.25 0.04 -3.07 16 8 C -0.04 -0.80 4.78 -104.58 -0.50 -1.29 16 9 C 0.09 2.09 2.21 -92.92 -0.21 1.89 16 10 H 0.08 2.19 6.00 -51.93 -0.31 1.87 16 11 C -0.50 -13.17 7.71 -34.44 -0.27 -13.44 16 12 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 13 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 14 N -0.88 -24.99 12.76 55.43 0.71 -24.28 16 15 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.12 -2.51 4.93 -90.62 -0.45 -2.95 16 20 C -0.20 -3.74 10.18 -26.69 -0.27 -4.01 16 21 C -0.17 -3.24 10.02 -26.69 -0.27 -3.50 16 22 C -0.06 -1.32 8.41 -39.37 -0.33 -1.65 16 23 H 0.08 0.81 7.75 -51.92 -0.40 0.41 16 24 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 25 H 0.08 0.77 7.75 -51.93 -0.40 0.36 16 26 H 0.12 1.58 5.88 -52.49 -0.31 1.27 16 27 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.08 1.66 7.42 -51.93 -0.39 1.28 16 30 H 0.09 1.68 8.08 -51.93 -0.42 1.26 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 34 H 0.13 2.62 7.80 -52.49 -0.41 2.21 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -28.31 305.35 -9.15 -37.46 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.30 Total: 3.32 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: -2.75 Total: -29.74 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.71 Total: -24.28 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.43 Total: -4.38 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.31 -9.15 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.887 kcal (2) G-P(sol) polarization free energy of solvation -28.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds