Wall clock time and date at job start Mon Mar 30 2020 07:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76201 * 103.00080 * 2 1 4 4 C 1.38955 * 120.05109 * 0.02562 * 3 2 1 5 5 C 1.38081 * 119.93973 * 179.97438 * 4 3 2 6 6 C 1.38501 * 120.05777 * 0.02562 * 5 4 3 7 7 F 1.35102 * 119.94439 * 180.27814 * 6 5 4 8 8 C 1.38457 * 120.10866 * 0.02562 * 6 5 4 9 9 C 1.50700 * 119.97132 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47308 * 0.02562 * 9 8 6 11 11 C 1.50701 * 109.46990 * 239.99495 * 9 8 6 12 12 H 1.07997 * 120.00055 * 275.65526 * 11 9 8 13 13 C 1.37881 * 119.99702 * 95.65787 * 11 9 8 14 14 N 1.31517 * 120.00061 * 6.11041 * 13 11 9 15 15 Si 1.86796 * 119.99865 * 186.11489 * 13 11 9 16 16 H 1.48503 * 109.47411 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47083 * 119.99589 * 15 13 11 18 18 H 1.48495 * 109.47340 * 239.99782 * 15 13 11 19 19 C 1.53006 * 109.47138 * 119.99727 * 9 8 6 20 20 C 1.53000 * 117.49867 * 254.06389 * 19 9 8 21 21 C 1.53002 * 117.49811 * 185.40391 * 19 9 8 22 22 C 1.38124 * 120.05549 * 359.97195 * 8 6 5 23 23 H 1.09001 * 109.46688 * 60.00136 * 1 2 3 24 24 H 1.09006 * 109.46813 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47234 * 299.99760 * 1 2 3 26 26 H 1.07994 * 120.03492 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.97088 * 180.02562 * 5 4 3 28 28 H 0.96993 * 119.99680 * 180.02562 * 14 13 11 29 29 H 1.09003 * 115.54971 * 39.73796 * 19 9 8 30 30 H 1.09002 * 117.49581 * 0.02562 * 20 19 9 31 31 H 1.09003 * 117.49545 * 145.01625 * 20 19 9 32 32 H 1.08997 * 117.49676 * 214.97765 * 21 19 9 33 33 H 1.08999 * 117.49837 * 359.97438 * 21 19 9 34 34 H 1.08000 * 120.02629 * 180.02562 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1950 2.6654 0.0005 5 6 1.5083 4.0102 0.0011 6 6 2.8331 4.4139 0.0005 7 9 3.1370 5.7303 0.0067 8 6 3.8466 3.4706 -0.0011 9 6 5.2871 3.9133 -0.0022 10 1 5.3326 5.0023 -0.0011 11 6 5.9748 3.3824 -1.2337 12 1 6.3798 2.3813 -1.2368 13 6 6.0868 4.1750 -2.3564 14 7 5.7026 5.4321 -2.3149 15 14 6.7842 3.4631 -3.9363 16 1 7.1400 2.0373 -3.7222 17 1 5.7686 3.5636 -5.0151 18 1 7.9988 4.2225 -4.3276 19 6 5.9878 3.3729 1.2460 20 6 6.2974 4.3660 2.3681 21 6 7.4299 3.8189 1.4956 22 6 3.5385 2.1242 -0.0016 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.1618 2.3512 0.0005 27 1 0.7195 4.7479 0.0019 28 1 5.7811 5.9895 -3.1048 29 1 5.7184 2.3566 1.5335 30 1 6.0015 5.4042 2.2171 31 1 6.2319 4.0029 3.3937 32 1 8.1091 3.0961 1.9476 33 1 7.8797 4.4969 0.7702 34 1 4.3294 1.3888 -0.0024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:09 Heat of formation + Delta-G solvation = -20.662806 kcal Electronic energy + Delta-G solvation = -17959.236192 eV Core-core repulsion = 15090.521888 eV Total energy + Delta-G solvation = -2868.714304 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.59550 -40.04825 -38.10927 -34.94953 -32.95860 -31.45014 -30.04119 -28.67735 -25.66148 -23.87896 -23.07767 -22.88411 -20.82982 -18.54680 -18.50421 -17.97616 -17.12736 -16.66295 -16.29304 -16.13787 -15.64266 -15.06564 -14.90023 -14.55161 -14.35950 -14.05765 -13.82583 -13.60534 -13.33686 -13.19735 -12.92345 -12.64657 -12.44193 -12.26753 -12.00146 -11.80207 -11.28044 -11.11356 -11.00856 -10.57790 -10.45440 -10.32347 -9.56321 -8.22840 -8.12580 -6.22432 0.20742 0.44821 0.64524 1.36897 1.39574 1.50446 1.57940 2.39245 2.69997 3.12580 3.24560 3.57246 3.89770 3.98944 4.14539 4.27707 4.34854 4.35292 4.36451 4.52166 4.59140 4.80246 4.86091 4.88626 4.91902 5.11593 5.19571 5.22211 5.29606 5.41824 5.44102 5.60381 5.72247 5.92367 6.05622 6.29529 6.90567 7.42448 8.93477 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.007483 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.583557 B = 3740.972939 C = 4157.630364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.147 6.147 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.137 4.137 6 C 0.055 3.945 7 F -0.153 7.153 8 C -0.060 4.060 9 C 0.089 3.911 10 H 0.039 0.961 11 C -0.504 4.504 12 H 0.056 0.944 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.946 3.054 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.280 1.280 19 C -0.139 4.139 20 C -0.183 4.183 21 C -0.165 4.165 22 C -0.080 4.080 23 H 0.091 0.909 24 H 0.128 0.872 25 H 0.096 0.904 26 H 0.163 0.837 27 H 0.154 0.846 28 H 0.260 0.740 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 -8.328 6.333 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.094 5.906 3 C -0.213 4.213 4 C -0.147 4.147 5 C -0.157 4.157 6 C 0.033 3.967 7 F -0.132 7.132 8 C -0.063 4.063 9 C 0.070 3.930 10 H 0.057 0.943 11 C -0.542 4.542 12 H 0.074 0.926 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.772 3.228 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.206 1.206 19 C -0.157 4.157 20 C -0.220 4.220 21 C -0.202 4.202 22 C -0.103 4.103 23 H 0.110 0.890 24 H 0.147 0.853 25 H 0.115 0.885 26 H 0.180 0.820 27 H 0.172 0.828 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.434 -9.178 6.223 14.559 hybrid contribution -0.065 1.626 -1.189 2.015 sum -9.499 -7.552 5.034 13.138 Atomic orbital electron populations 1.23786 0.91249 1.08610 1.06643 1.85442 1.10231 1.01886 1.93077 1.21812 0.96122 0.97814 1.05551 1.21113 0.99359 0.91017 1.03196 1.21191 0.93853 0.97772 1.02901 1.18056 0.94540 0.77617 1.06453 1.91414 1.94272 1.33335 1.94202 1.20673 0.97567 0.92825 0.95224 1.17494 0.86577 0.96935 0.91976 0.94300 1.21164 1.35687 0.99965 0.97336 0.92571 1.25722 0.95765 0.94944 1.01863 1.70094 1.48915 1.06680 1.29790 0.85681 0.77933 0.79163 0.80045 1.18651 1.21090 1.20605 1.22370 0.98668 0.98144 0.96515 1.23020 1.04230 0.98480 0.96256 1.22717 0.91614 1.03669 1.02174 1.20384 0.94716 0.94489 1.00730 0.88998 0.85319 0.88473 0.81964 0.82850 0.93110 0.88599 0.90958 0.87154 0.87502 0.91223 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.15 113.37 1.04 -1.05 16 2 S -0.15 -3.90 22.56 -56.49 -1.27 -5.18 16 3 C -0.10 -3.40 6.11 22.60 0.14 -3.26 16 4 C -0.12 -3.70 9.36 22.40 0.21 -3.49 16 5 C -0.14 -4.74 10.02 22.30 0.22 -4.52 16 6 C 0.05 2.43 7.24 22.38 0.16 2.59 16 7 F -0.15 -7.56 16.18 44.97 0.73 -6.83 16 8 C -0.06 -2.77 4.78 -19.84 -0.09 -2.86 16 9 C 0.09 4.49 2.21 -12.28 -0.03 4.47 16 10 H 0.04 2.26 6.00 -2.39 -0.01 2.24 16 11 C -0.50 -27.43 7.71 25.60 0.20 -27.24 16 12 H 0.06 3.02 7.82 -2.91 -0.02 3.00 16 13 C 0.02 0.92 5.45 84.66 0.46 1.38 16 14 N -0.92 -54.60 12.76 21.45 0.27 -54.33 16 15 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 16 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 C -0.14 -5.89 4.93 -10.79 -0.05 -5.94 16 20 C -0.18 -6.80 10.18 30.62 0.31 -6.49 16 21 C -0.16 -6.42 10.02 30.62 0.31 -6.12 16 22 C -0.08 -3.27 8.41 22.41 0.19 -3.08 16 23 H 0.09 1.32 7.75 -2.39 -0.02 1.30 16 24 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.10 1.27 7.75 -2.39 -0.02 1.26 16 26 H 0.16 3.42 5.88 -2.91 -0.02 3.40 16 27 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 28 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.10 3.80 7.42 -2.39 -0.02 3.78 16 30 H 0.07 2.89 8.08 -2.39 -0.02 2.87 16 31 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.12 5.04 7.80 -2.91 -0.02 5.02 16 Total: -1.00 -64.90 305.35 5.91 -58.99 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 1.10 Total: 16.51 kcal Atomic # 6 Polarization: -58.67 SS G_CDS: 3.06 Total: -55.61 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.27 Total: -54.33 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.73 Total: -6.83 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -1.27 Total: -5.18 kcal Total: -64.90 5.91 -58.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.327 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds