Wall clock time and date at job start Mon Mar 30 2020 07:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.76203 * 102.99683 * 2 1 4 4 C 1.38958 * 120.05675 * 0.02562 * 3 2 1 5 5 C 1.38081 * 119.94181 * 179.97438 * 4 3 2 6 6 C 1.38495 * 120.05593 * 359.73258 * 5 4 3 7 7 F 1.35106 * 119.94350 * 180.27589 * 6 5 4 8 8 C 1.38453 * 120.11097 * 0.54068 * 6 5 4 9 9 C 1.50703 * 119.97352 * 179.72702 * 8 6 5 10 10 H 1.09002 * 109.47152 * 359.73016 * 9 8 6 11 11 C 1.50701 * 109.47064 * 119.72923 * 9 8 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 9 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.53002 * 109.46966 * 239.73156 * 9 8 6 20 20 C 1.53001 * 117.49775 * 128.74868 * 19 9 8 21 21 C 1.52997 * 117.49972 * 60.08866 * 19 9 8 22 22 C 1.38127 * 120.05250 * 359.45826 * 8 6 5 23 23 H 1.08995 * 109.46705 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47015 * 299.99806 * 1 2 3 25 25 H 1.08998 * 109.46845 * 59.99803 * 1 2 3 26 26 H 1.07996 * 120.02405 * 0.02562 * 4 3 2 27 27 H 1.08006 * 119.96772 * 180.02562 * 5 4 3 28 28 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 29 29 H 1.09005 * 115.54775 * 274.41493 * 19 9 8 30 30 H 1.09002 * 117.49771 * 359.97438 * 20 19 9 31 31 H 1.09001 * 117.49702 * 145.01628 * 20 19 9 32 32 H 1.08999 * 117.49622 * 214.97459 * 21 19 9 33 33 H 1.09000 * 117.49906 * 359.97438 * 21 19 9 34 34 H 1.08002 * 120.02159 * 180.24999 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1950 2.6655 0.0005 5 6 1.5082 4.0103 0.0011 6 6 2.8330 4.4140 0.0067 7 9 3.1369 5.7304 0.0128 8 6 3.8466 3.4707 0.0004 9 6 5.2871 3.9134 0.0003 10 1 5.3325 5.0025 0.0008 11 6 5.9762 3.3815 1.2305 12 1 5.4262 2.7823 1.9410 13 6 7.3091 3.6587 1.4482 14 7 7.9790 4.3879 0.5827 15 14 8.1634 2.9987 2.9726 16 1 7.1968 2.2126 3.7806 17 1 9.2944 2.1257 2.5674 18 1 8.6785 4.1326 3.7815 19 6 5.9862 3.3743 -1.2493 20 6 6.7636 4.3724 -2.1099 21 6 5.4328 3.8043 -2.6094 22 6 3.5384 2.1243 -0.0001 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.1618 2.3512 0.0014 27 1 0.7193 4.7480 0.0019 28 1 8.9167 4.5832 0.7361 29 1 6.3860 2.3638 -1.1652 30 1 6.7766 5.4131 -1.7860 31 1 7.6746 4.0182 -2.5923 32 1 5.4689 3.0768 -3.4202 33 1 4.5704 4.4709 -2.6139 34 1 4.3294 1.3889 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:15 Heat of formation + Delta-G solvation = -5.444019 kcal Electronic energy + Delta-G solvation = -17956.931368 eV Core-core repulsion = 15088.877001 eV Total energy + Delta-G solvation = -2868.054368 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -48.21215 -38.67831 -36.37303 -32.82005 -31.45742 -30.16523 -29.10007 -27.09532 -23.65247 -22.43513 -21.57007 -21.11684 -19.11585 -17.12773 -16.75687 -16.59396 -15.69375 -14.91033 -14.69216 -14.56781 -14.25097 -13.77673 -13.68566 -13.06095 -12.95479 -12.74625 -12.61766 -12.26113 -11.97519 -11.40959 -11.08545 -10.97053 -10.63111 -10.47409 -10.25682 -10.06873 -9.84618 -9.72067 -9.11562 -8.83153 -8.76920 -8.34110 -8.11100 -7.07730 -6.02164 -4.09977 1.53484 1.68635 1.75915 2.57390 3.28836 3.37429 3.41807 4.04163 4.42882 4.81608 5.00695 5.01103 5.05753 5.15934 5.28630 5.30810 5.56633 5.72055 5.85923 5.96774 6.15431 6.21533 6.30668 6.41678 6.51773 6.60356 6.75510 6.86407 6.97146 7.12789 7.23417 7.40481 7.47468 7.73945 7.92850 8.27666 8.91889 9.54457 11.03700 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.006975 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.771312 B = 4013.592707 C = 4571.678889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.124 6.124 3 C -0.100 4.100 4 C -0.131 4.131 5 C -0.142 4.142 6 C 0.083 3.917 7 F -0.139 7.139 8 C -0.040 4.040 9 C 0.103 3.897 10 H 0.045 0.955 11 C -0.517 4.517 12 H 0.060 0.940 13 C 0.069 3.931 14 N -0.872 5.872 15 Si 0.889 3.111 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.082 4.082 20 C -0.134 4.134 21 C -0.227 4.227 22 C -0.056 4.056 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.127 0.873 28 H 0.259 0.741 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 -4.808 -3.033 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.116 5.884 3 C -0.213 4.213 4 C -0.155 4.155 5 C -0.163 4.163 6 C 0.062 3.938 7 F -0.118 7.118 8 C -0.043 4.043 9 C 0.084 3.916 10 H 0.063 0.937 11 C -0.555 4.555 12 H 0.078 0.922 13 C -0.134 4.134 14 N -0.508 5.508 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.101 4.101 20 C -0.171 4.171 21 C -0.264 4.264 22 C -0.079 4.079 23 H 0.121 0.879 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.380 -5.734 -3.069 13.108 hybrid contribution -0.226 1.070 0.813 1.363 sum -11.606 -4.664 -2.256 12.710 Atomic orbital electron populations 1.23616 0.95737 1.06533 1.05390 1.85445 1.05304 1.04251 1.93371 1.21627 0.96873 0.95685 1.07066 1.20695 0.97789 0.92073 1.04909 1.20835 0.94733 0.96287 1.04422 1.17680 0.93121 0.78070 1.04919 1.91453 1.93989 1.32352 1.93991 1.20575 0.97840 0.91786 0.94077 1.17542 0.83614 0.97147 0.93274 0.93657 1.20996 0.95053 1.33828 1.05644 0.92216 1.24941 0.97347 0.94868 0.96258 1.70037 1.09133 1.36949 1.34704 0.86573 0.79613 0.78795 0.83310 1.19692 1.21003 1.21031 1.22166 1.00610 0.98335 0.89016 1.22444 0.92238 0.99646 1.02761 1.23072 0.98465 1.04940 0.99900 1.20551 0.93492 0.95665 0.98239 0.87858 0.89988 0.90020 0.86019 0.85458 0.93074 0.89693 0.89546 0.91007 0.90887 0.90668 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.15 101.05 0.92 -0.44 16 2 S -0.12 -1.74 22.56 -107.50 -2.43 -4.17 16 3 C -0.10 -1.68 6.11 -39.07 -0.24 -1.92 16 4 C -0.13 -1.98 9.36 -39.37 -0.37 -2.35 16 5 C -0.14 -2.32 10.02 -39.54 -0.40 -2.71 16 6 C 0.08 1.65 7.24 -39.41 -0.29 1.37 16 7 F -0.14 -2.91 16.18 2.25 0.04 -2.88 16 8 C -0.04 -0.86 4.39 -104.58 -0.46 -1.32 16 9 C 0.10 2.51 2.08 -92.92 -0.19 2.31 16 10 H 0.05 1.23 6.88 -51.93 -0.36 0.87 16 11 C -0.52 -13.76 8.22 -34.44 -0.28 -14.04 16 12 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 13 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 14 N -0.87 -23.90 11.43 55.43 0.63 -23.26 16 15 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 C -0.08 -1.90 3.86 -90.62 -0.35 -2.25 16 20 C -0.13 -2.95 9.04 -26.69 -0.24 -3.19 16 21 C -0.23 -4.57 9.87 -26.69 -0.26 -4.83 16 22 C -0.06 -1.11 8.56 -39.37 -0.34 -1.44 16 23 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.08 0.72 7.75 -51.92 -0.40 0.32 16 25 H 0.08 0.71 7.75 -51.93 -0.40 0.30 16 26 H 0.12 1.44 5.88 -52.49 -0.31 1.13 16 27 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.08 2.03 8.11 -51.93 -0.42 1.61 16 30 H 0.09 2.02 8.05 -51.93 -0.42 1.60 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.14 2.75 8.05 -52.49 -0.42 2.33 16 LS Contribution 303.25 15.07 4.57 4.57 Total: -1.00 -27.62 303.25 -9.17 -36.79 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.38 Total: 2.07 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -2.59 Total: -29.03 kcal Atomic # 7 Polarization: -23.90 SS G_CDS: 0.63 Total: -23.26 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.43 Total: -4.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.62 -9.17 -36.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.346 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds