Wall clock time and date at job start Mon Mar 30 2020 07:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.76203 * 102.99683 * 2 1 4 4 C 1.38958 * 120.05675 * 0.02562 * 3 2 1 5 5 C 1.38081 * 119.94181 * 179.97438 * 4 3 2 6 6 C 1.38495 * 120.05593 * 359.73258 * 5 4 3 7 7 F 1.35106 * 119.94350 * 180.27589 * 6 5 4 8 8 C 1.38453 * 120.11097 * 0.54068 * 6 5 4 9 9 C 1.50703 * 119.97352 * 179.72702 * 8 6 5 10 10 H 1.09002 * 109.47152 * 359.73016 * 9 8 6 11 11 C 1.50701 * 109.47064 * 119.72923 * 9 8 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 9 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.53002 * 109.46966 * 239.73156 * 9 8 6 20 20 C 1.53001 * 117.49775 * 128.74868 * 19 9 8 21 21 C 1.52997 * 117.49972 * 60.08866 * 19 9 8 22 22 C 1.38127 * 120.05250 * 359.45826 * 8 6 5 23 23 H 1.08995 * 109.46705 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47015 * 299.99806 * 1 2 3 25 25 H 1.08998 * 109.46845 * 59.99803 * 1 2 3 26 26 H 1.07996 * 120.02405 * 0.02562 * 4 3 2 27 27 H 1.08006 * 119.96772 * 180.02562 * 5 4 3 28 28 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 29 29 H 1.09005 * 115.54775 * 274.41493 * 19 9 8 30 30 H 1.09002 * 117.49771 * 359.97438 * 20 19 9 31 31 H 1.09001 * 117.49702 * 145.01628 * 20 19 9 32 32 H 1.08999 * 117.49622 * 214.97459 * 21 19 9 33 33 H 1.09000 * 117.49906 * 359.97438 * 21 19 9 34 34 H 1.08002 * 120.02159 * 180.24999 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1950 2.6655 0.0005 5 6 1.5082 4.0103 0.0011 6 6 2.8330 4.4140 0.0067 7 9 3.1369 5.7304 0.0128 8 6 3.8466 3.4707 0.0004 9 6 5.2871 3.9134 0.0003 10 1 5.3325 5.0025 0.0008 11 6 5.9762 3.3815 1.2305 12 1 5.4262 2.7823 1.9410 13 6 7.3091 3.6587 1.4482 14 7 7.9790 4.3879 0.5827 15 14 8.1634 2.9987 2.9726 16 1 7.1968 2.2126 3.7806 17 1 9.2944 2.1257 2.5674 18 1 8.6785 4.1326 3.7815 19 6 5.9862 3.3743 -1.2493 20 6 6.7636 4.3724 -2.1099 21 6 5.4328 3.8043 -2.6094 22 6 3.5384 2.1243 -0.0001 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.1618 2.3512 0.0014 27 1 0.7193 4.7480 0.0019 28 1 8.9167 4.5832 0.7361 29 1 6.3860 2.3638 -1.1652 30 1 6.7766 5.4131 -1.7860 31 1 7.6746 4.0182 -2.5923 32 1 5.4689 3.0768 -3.4202 33 1 4.5704 4.4709 -2.6139 34 1 4.3294 1.3889 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:14 Heat of formation + Delta-G solvation = -17.833908 kcal Electronic energy + Delta-G solvation = -17957.468634 eV Core-core repulsion = 15088.877001 eV Total energy + Delta-G solvation = -2868.591634 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.75595 -40.15792 -38.06822 -34.75255 -33.08338 -31.51699 -30.06293 -28.72297 -25.50789 -23.87149 -23.14956 -22.79965 -20.88471 -18.62355 -18.47225 -18.02799 -17.23614 -16.57668 -16.46992 -15.97518 -15.67405 -15.15288 -14.78631 -14.56358 -14.49585 -14.17403 -13.93984 -13.61500 -13.37340 -12.90266 -12.87404 -12.75405 -12.33817 -12.23770 -12.04102 -11.74269 -11.55990 -11.13291 -10.69174 -10.65783 -10.38388 -10.25994 -9.64626 -8.26388 -8.07309 -6.21498 0.12873 0.38298 0.62249 1.39122 1.41965 1.52506 1.57722 2.41854 2.64859 3.18454 3.30475 3.45950 3.86309 3.99495 4.18774 4.27289 4.36189 4.36496 4.44138 4.47216 4.60521 4.78112 4.85483 4.90912 5.02242 5.08341 5.19000 5.26242 5.30046 5.43279 5.45212 5.59399 5.74147 5.92604 5.97598 6.29381 6.84738 7.44902 8.97094 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.006975 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.771312 B = 4013.592707 C = 4571.678889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.150 6.150 3 C -0.097 4.097 4 C -0.117 4.117 5 C -0.127 4.127 6 C 0.053 3.947 7 F -0.154 7.154 8 C -0.066 4.066 9 C 0.108 3.892 10 H 0.005 0.995 11 C -0.531 4.531 12 H 0.049 0.951 13 C 0.024 3.976 14 N -0.894 5.894 15 Si 0.948 3.052 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.282 1.282 19 C -0.098 4.098 20 C -0.139 4.139 21 C -0.192 4.192 22 C -0.074 4.074 23 H 0.127 0.873 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.167 0.833 27 H 0.163 0.837 28 H 0.260 0.740 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.077 -6.222 -3.215 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.091 5.909 3 C -0.209 4.209 4 C -0.140 4.140 5 C -0.147 4.147 6 C 0.032 3.968 7 F -0.133 7.133 8 C -0.068 4.068 9 C 0.090 3.910 10 H 0.023 0.977 11 C -0.569 4.569 12 H 0.067 0.933 13 C -0.177 4.177 14 N -0.532 5.532 15 Si 0.774 3.226 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.208 1.208 19 C -0.116 4.116 20 C -0.176 4.176 21 C -0.229 4.229 22 C -0.097 4.097 23 H 0.146 0.854 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.184 0.816 27 H 0.180 0.820 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.251 -7.161 -3.253 16.278 hybrid contribution 0.526 1.421 0.869 1.747 sum -13.725 -5.740 -2.384 15.067 Atomic orbital electron populations 1.23804 0.90973 1.08665 1.06816 1.85620 1.10462 1.01973 1.92843 1.21838 0.95986 0.97927 1.05151 1.21200 0.99423 0.91045 1.02372 1.21208 0.93668 0.97744 1.02078 1.17987 0.94524 0.77261 1.07053 1.91407 1.94292 1.33269 1.94362 1.20331 0.96510 0.93148 0.96861 1.17250 0.86164 0.94480 0.93138 0.97656 1.21243 0.95507 1.33659 1.06502 0.93262 1.25631 0.97988 0.95223 0.98835 1.70148 1.09208 1.37765 1.36030 0.85659 0.78540 0.78191 0.80195 1.19549 1.20417 1.20800 1.21954 1.01972 0.97582 0.90142 1.22359 0.93707 0.98319 1.03259 1.23044 0.97047 1.04202 0.98572 1.20380 0.94804 0.94475 1.00050 0.85440 0.88626 0.88390 0.81566 0.81976 0.93116 0.91161 0.91644 0.90231 0.88191 0.90562 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.15 113.37 1.04 -0.82 16 2 S -0.15 -3.83 22.56 -56.49 -1.27 -5.10 16 3 C -0.10 -3.06 6.11 22.60 0.14 -2.92 16 4 C -0.12 -3.09 9.36 22.41 0.21 -2.88 16 5 C -0.13 -3.79 10.02 22.29 0.22 -3.57 16 6 C 0.05 2.11 7.24 22.38 0.16 2.28 16 7 F -0.15 -6.66 16.18 44.97 0.73 -5.93 16 8 C -0.07 -2.91 4.39 -19.84 -0.09 -3.00 16 9 C 0.11 5.58 2.08 -12.28 -0.03 5.55 16 10 H 0.01 0.31 6.88 -2.39 -0.02 0.30 16 11 C -0.53 -29.63 8.22 25.60 0.21 -29.42 16 12 H 0.05 2.77 7.60 -2.91 -0.02 2.74 16 13 C 0.02 1.35 5.30 84.66 0.45 1.80 16 14 N -0.89 -50.92 11.43 21.45 0.25 -50.67 16 15 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 C -0.10 -4.68 3.86 -10.79 -0.04 -4.72 16 20 C -0.14 -6.35 9.04 30.62 0.28 -6.07 16 21 C -0.19 -7.75 9.87 30.62 0.30 -7.44 16 22 C -0.07 -2.94 8.56 22.40 0.19 -2.75 16 23 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.09 1.14 7.75 -2.39 -0.02 1.12 16 25 H 0.10 1.12 7.75 -2.39 -0.02 1.10 16 26 H 0.17 2.91 5.88 -2.91 -0.02 2.89 16 27 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.07 3.52 8.11 -2.38 -0.02 3.50 16 30 H 0.06 3.23 8.05 -2.39 -0.02 3.21 16 31 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 32 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.12 5.01 8.05 -2.91 -0.02 4.98 16 Total: -1.00 -63.25 303.25 5.87 -57.38 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.09 Total: 12.14 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 3.05 Total: -53.95 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.25 Total: -50.67 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.73 Total: -5.93 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -1.27 Total: -5.10 kcal Total: -63.25 5.87 -57.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.551 kcal (2) G-P(sol) polarization free energy of solvation -63.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds