Wall clock time and date at job start Mon Mar 30 2020 07:52:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.76197 * 103.00050 * 2 1
4 4 C 1.38892 * 120.08289 * 0.02562 * 3 2 1
5 5 C 1.38132 * 119.94103 * 180.23307 * 4 3 2
6 6 C 1.38289 * 120.11950 * 359.51375 * 5 4 3
7 7 C 1.50702 * 119.91649 * 180.23367 * 6 5 4
8 8 H 1.08995 * 109.46671 * 180.22907 * 7 6 5
9 9 C 1.50701 * 109.46960 * 60.23046 * 7 6 5
10 10 H 1.07998 * 119.99880 * 265.22045 * 9 7 6
11 11 C 1.37877 * 120.00068 * 85.22391 * 9 7 6
12 12 N 1.31518 * 119.99897 * 5.09108 * 11 9 7
13 13 Si 1.86797 * 119.99900 * 185.09046 * 11 9 7
14 14 H 1.48497 * 109.47289 * 0.02562 * 13 11 9
15 15 H 1.48507 * 109.46968 * 120.00303 * 13 11 9
16 16 H 1.48500 * 109.47033 * 239.99719 * 13 11 9
17 17 C 1.52999 * 109.46992 * 300.23064 * 7 6 5
18 18 C 1.53004 * 117.49623 * 254.12904 * 17 7 6
19 19 C 1.53001 * 117.49673 * 185.46974 * 17 7 6
20 20 C 1.38307 * 120.16930 * 0.46182 * 6 5 4
21 21 C 1.38259 * 120.05406 * 359.79612 * 20 6 5
22 22 F 1.35103 * 120.05811 * 179.97438 * 21 20 6
23 23 H 1.09001 * 109.47231 * 180.02562 * 1 2 3
24 24 H 1.09007 * 109.47275 * 299.99795 * 1 2 3
25 25 H 1.08996 * 109.47305 * 59.99780 * 1 2 3
26 26 H 1.08001 * 120.02995 * 359.95248 * 4 3 2
27 27 H 1.08003 * 119.93829 * 179.72442 * 5 4 3
28 28 H 0.97001 * 119.99709 * 180.02562 * 12 11 9
29 29 H 1.08994 * 115.55358 * 39.80000 * 17 7 6
30 30 H 1.09000 * 117.49652 * 0.02562 * 18 17 7
31 31 H 1.08994 * 117.49573 * 145.02600 * 18 17 7
32 32 H 1.08998 * 117.49928 * 214.97879 * 19 17 7
33 33 H 1.09007 * 117.49768 * 359.97438 * 19 17 7
34 34 H 1.07997 * 119.97425 * 179.76639 * 20 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2104 1.7168 0.0000
4 6 1.1959 2.6655 0.0005
5 6 1.5100 4.0107 -0.0043
6 6 2.8326 4.4145 0.0004
7 6 3.1700 5.8832 0.0004
8 1 4.2529 6.0072 0.0003
9 6 2.5902 6.5318 1.2309
10 1 1.6248 7.0137 1.1833
11 6 3.2922 6.5102 2.4174
12 7 4.5092 6.0129 2.4524
13 14 2.5146 7.1872 3.9751
14 1 1.1488 7.6843 3.6709
15 1 2.4334 6.1114 4.9957
16 1 3.3433 8.3033 4.4973
17 6 2.5812 6.5417 -1.2488
18 6 3.5498 6.9199 -2.3713
19 6 2.9232 8.0117 -1.5003
20 6 3.8466 3.4738 0.0004
21 6 3.5403 2.1256 -0.0001
22 9 4.5307 1.2067 -0.0006
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8900
25 1 -0.3634 0.5138 -0.8899
26 1 0.1625 2.3518 0.0002
27 1 0.7212 4.7483 -0.0084
28 1 5.0029 5.9974 3.2873
29 1 1.5868 6.2002 -1.5360
30 1 4.6064 6.6991 -2.2198
31 1 3.1924 6.8274 -3.3968
32 1 2.1538 8.6370 -1.9533
33 1 3.5673 8.5097 -0.7756
34 1 4.8784 3.7927 0.0003
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260232149.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:52:26
Heat of formation + Delta-G solvation = -8.077513 kcal
Electronic energy + Delta-G solvation = -17745.243066 eV
Core-core repulsion = 14877.074502 eV
Total energy + Delta-G solvation = -2868.168565 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.084 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-48.29195 -38.61236 -36.49165 -33.10005 -31.22749 -30.07923 -28.75356 -27.28559
-23.89011 -22.13800 -21.64494 -21.44079 -19.21220 -17.43548 -16.71573 -15.93204
-15.65637 -15.06819 -14.88246 -14.77005 -14.35199 -13.68680 -13.62281 -13.34877
-12.94630 -12.72523 -12.42175 -11.88402 -11.74942 -11.45410 -11.25888 -10.99746
-10.81310 -10.65888 -10.50488 -10.08856 -9.99868 -9.58723 -9.37451 -8.98106
-8.64561 -8.55699 -8.16011 -6.92722 -6.15810 -4.19606 1.76410 1.80917
1.90301 2.64846 3.22942 3.32200 3.34330 4.26043 4.36566 4.69179
4.80906 5.08615 5.10510 5.16749 5.34102 5.56844 5.62555 5.73338
5.81032 5.83124 6.02185 6.13947 6.25327 6.38135 6.44599 6.57254
6.68701 6.73843 6.85471 6.93863 7.16299 7.32732 7.61481 7.69834
7.82398 8.20158 8.86162 9.44343 10.91866
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.016966 B = 0.006720 C = 0.005883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1649.978762 B = 4165.903639 C = 4758.279169
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 S -0.128 6.128
3 C -0.154 4.154
4 C -0.112 4.112
5 C -0.108 4.108
6 C 0.015 3.985
7 C 0.093 3.907
8 H 0.065 0.935
9 C -0.503 4.503
10 H 0.061 0.939
11 C 0.067 3.933
12 N -0.882 5.882
13 Si 0.890 3.110
14 H -0.271 1.271
15 H -0.283 1.283
16 H -0.283 1.283
17 C -0.120 4.120
18 C -0.200 4.200
19 C -0.170 4.170
20 C -0.133 4.133
21 C 0.111 3.889
22 F -0.142 7.142
23 H 0.102 0.898
24 H 0.082 0.918
25 H 0.081 0.919
26 H 0.120 0.880
27 H 0.126 0.874
28 H 0.263 0.737
29 H 0.086 0.914
30 H 0.087 0.913
31 H 0.077 0.923
32 H 0.077 0.923
33 H 0.095 0.905
34 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.998 -5.800 -6.021 10.290
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.310 4.310
2 S 0.111 5.889
3 C -0.267 4.267
4 C -0.135 4.135
5 C -0.128 4.128
6 C 0.013 3.987
7 C 0.075 3.925
8 H 0.083 0.917
9 C -0.541 4.541
10 H 0.079 0.921
11 C -0.136 4.136
12 N -0.518 5.518
13 Si 0.717 3.283
14 H -0.196 1.196
15 H -0.209 1.209
16 H -0.209 1.209
17 C -0.139 4.139
18 C -0.237 4.237
19 C -0.207 4.207
20 C -0.154 4.154
21 C 0.086 3.914
22 F -0.121 7.121
23 H 0.121 0.879
24 H 0.101 0.899
25 H 0.100 0.900
26 H 0.137 0.863
27 H 0.144 0.856
28 H 0.073 0.927
29 H 0.104 0.896
30 H 0.106 0.894
31 H 0.096 0.904
32 H 0.096 0.904
33 H 0.114 0.886
34 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -5.159 -6.907 -5.891 10.441
hybrid contribution -1.027 1.230 1.107 1.947
sum -6.186 -5.676 -4.785 9.663
Atomic orbital electron populations
1.23596 0.95478 1.06397 1.05523 1.85302 1.05593 1.04013 1.94004
1.21348 0.94961 0.96580 1.13789 1.20870 0.96934 0.93134 1.02587
1.20932 0.97240 0.94038 1.00564 1.20654 0.91259 0.98215 0.88599
1.17691 0.98579 0.85306 0.90960 0.91713 1.20924 1.04800 1.35200
0.93174 0.92053 1.25000 0.94595 0.94891 0.99148 1.69918 1.09994
1.45002 1.26921 0.86563 0.79637 0.78691 0.83369 1.19579 1.20940
1.20929 1.22425 0.97916 0.96958 0.96569 1.23003 0.99194 1.06129
0.95358 1.22735 1.03233 0.92207 1.02523 1.21048 1.01379 0.89495
1.03442 1.17175 0.82805 0.86611 1.04767 1.91439 1.60557 1.66007
1.94089 0.87920 0.89919 0.89982 0.86262 0.85637 0.92691 0.89607
0.89425 0.90409 0.90450 0.88605 0.84843
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.55 9.15 101.05 0.92 -0.63 16
2 S -0.13 -2.01 22.17 -107.50 -2.38 -4.40 16
3 C -0.15 -2.87 6.11 -39.01 -0.24 -3.11 16
4 C -0.11 -1.97 9.36 -39.38 -0.37 -2.34 16
5 C -0.11 -2.09 8.65 -39.60 -0.34 -2.43 16
6 C 0.02 0.33 4.78 -104.58 -0.50 -0.17 16
7 C 0.09 2.11 2.06 -92.92 -0.19 1.91 16
8 H 0.06 1.63 7.06 -51.93 -0.37 1.26 16
9 C -0.50 -12.57 7.72 -34.44 -0.27 -12.84 16
10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16
11 C 0.07 1.75 5.45 -17.82 -0.10 1.66 16
12 N -0.88 -24.09 12.92 55.43 0.72 -23.37 16
13 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16
14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
17 C -0.12 -2.32 4.92 -90.62 -0.45 -2.77 16
18 C -0.20 -3.42 10.18 -26.69 -0.27 -3.69 16
19 C -0.17 -3.04 10.02 -26.69 -0.27 -3.31 16
20 C -0.13 -2.87 9.64 -39.55 -0.38 -3.25 16
21 C 0.11 2.28 7.28 -39.24 -0.29 1.99 16
22 F -0.14 -2.90 16.76 2.25 0.04 -2.86 16
23 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16
24 H 0.08 0.89 7.75 -51.92 -0.40 0.48 16
25 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16
26 H 0.12 1.71 5.88 -52.49 -0.31 1.40 16
27 H 0.13 2.28 7.78 -52.48 -0.41 1.87 16
28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16
29 H 0.09 1.56 7.40 -51.93 -0.38 1.18 16
30 H 0.09 1.53 8.08 -51.93 -0.42 1.11 16
31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
33 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16
34 H 0.13 2.90 7.94 -52.49 -0.42 2.48 16
LS Contribution 306.37 15.07 4.62 4.62
Total: -1.00 -27.08 306.37 -9.11 -36.18
By element:
Atomic # 1 Polarization: 7.68 SS G_CDS: -4.34 Total: 3.34 kcal
Atomic # 6 Polarization: -26.24 SS G_CDS: -2.73 Total: -28.97 kcal
Atomic # 7 Polarization: -24.09 SS G_CDS: 0.72 Total: -23.37 kcal
Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal
Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal
Atomic # 16 Polarization: -2.01 SS G_CDS: -2.38 Total: -4.40 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -27.08 -9.11 -36.18 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260232149.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.107 kcal
(2) G-P(sol) polarization free energy of solvation -27.075 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.078 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds