Wall clock time and date at job start Mon Mar 30 2020 07:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76197 * 103.00050 * 2 1 4 4 C 1.38892 * 120.08289 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94103 * 180.23307 * 4 3 2 6 6 C 1.38289 * 120.11950 * 359.51375 * 5 4 3 7 7 C 1.50702 * 119.91649 * 180.23367 * 6 5 4 8 8 H 1.08995 * 109.46671 * 180.22907 * 7 6 5 9 9 C 1.50701 * 109.46960 * 60.23046 * 7 6 5 10 10 H 1.07998 * 119.99880 * 265.22045 * 9 7 6 11 11 C 1.37877 * 120.00068 * 85.22391 * 9 7 6 12 12 N 1.31518 * 119.99897 * 5.09108 * 11 9 7 13 13 Si 1.86797 * 119.99900 * 185.09046 * 11 9 7 14 14 H 1.48497 * 109.47289 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46968 * 120.00303 * 13 11 9 16 16 H 1.48500 * 109.47033 * 239.99719 * 13 11 9 17 17 C 1.52999 * 109.46992 * 300.23064 * 7 6 5 18 18 C 1.53004 * 117.49623 * 254.12904 * 17 7 6 19 19 C 1.53001 * 117.49673 * 185.46974 * 17 7 6 20 20 C 1.38307 * 120.16930 * 0.46182 * 6 5 4 21 21 C 1.38259 * 120.05406 * 359.79612 * 20 6 5 22 22 F 1.35103 * 120.05811 * 179.97438 * 21 20 6 23 23 H 1.09001 * 109.47231 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47275 * 299.99795 * 1 2 3 25 25 H 1.08996 * 109.47305 * 59.99780 * 1 2 3 26 26 H 1.08001 * 120.02995 * 359.95248 * 4 3 2 27 27 H 1.08003 * 119.93829 * 179.72442 * 5 4 3 28 28 H 0.97001 * 119.99709 * 180.02562 * 12 11 9 29 29 H 1.08994 * 115.55358 * 39.80000 * 17 7 6 30 30 H 1.09000 * 117.49652 * 0.02562 * 18 17 7 31 31 H 1.08994 * 117.49573 * 145.02600 * 18 17 7 32 32 H 1.08998 * 117.49928 * 214.97879 * 19 17 7 33 33 H 1.09007 * 117.49768 * 359.97438 * 19 17 7 34 34 H 1.07997 * 119.97425 * 179.76639 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1959 2.6655 0.0005 5 6 1.5100 4.0107 -0.0043 6 6 2.8326 4.4145 0.0004 7 6 3.1700 5.8832 0.0004 8 1 4.2529 6.0072 0.0003 9 6 2.5902 6.5318 1.2309 10 1 1.6248 7.0137 1.1833 11 6 3.2922 6.5102 2.4174 12 7 4.5092 6.0129 2.4524 13 14 2.5146 7.1872 3.9751 14 1 1.1488 7.6843 3.6709 15 1 2.4334 6.1114 4.9957 16 1 3.3433 8.3033 4.4973 17 6 2.5812 6.5417 -1.2488 18 6 3.5498 6.9199 -2.3713 19 6 2.9232 8.0117 -1.5003 20 6 3.8466 3.4738 0.0004 21 6 3.5403 2.1256 -0.0001 22 9 4.5307 1.2067 -0.0006 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.1625 2.3518 0.0002 27 1 0.7212 4.7483 -0.0084 28 1 5.0029 5.9974 3.2873 29 1 1.5868 6.2002 -1.5360 30 1 4.6064 6.6991 -2.2198 31 1 3.1924 6.8274 -3.3968 32 1 2.1538 8.6370 -1.9533 33 1 3.5673 8.5097 -0.7756 34 1 4.8784 3.7927 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260232149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:26 Heat of formation + Delta-G solvation = -8.077513 kcal Electronic energy + Delta-G solvation = -17745.243066 eV Core-core repulsion = 14877.074502 eV Total energy + Delta-G solvation = -2868.168565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -48.29195 -38.61236 -36.49165 -33.10005 -31.22749 -30.07923 -28.75356 -27.28559 -23.89011 -22.13800 -21.64494 -21.44079 -19.21220 -17.43548 -16.71573 -15.93204 -15.65637 -15.06819 -14.88246 -14.77005 -14.35199 -13.68680 -13.62281 -13.34877 -12.94630 -12.72523 -12.42175 -11.88402 -11.74942 -11.45410 -11.25888 -10.99746 -10.81310 -10.65888 -10.50488 -10.08856 -9.99868 -9.58723 -9.37451 -8.98106 -8.64561 -8.55699 -8.16011 -6.92722 -6.15810 -4.19606 1.76410 1.80917 1.90301 2.64846 3.22942 3.32200 3.34330 4.26043 4.36566 4.69179 4.80906 5.08615 5.10510 5.16749 5.34102 5.56844 5.62555 5.73338 5.81032 5.83124 6.02185 6.13947 6.25327 6.38135 6.44599 6.57254 6.68701 6.73843 6.85471 6.93863 7.16299 7.32732 7.61481 7.69834 7.82398 8.20158 8.86162 9.44343 10.91866 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.006720 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.978762 B = 4165.903639 C = 4758.279169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.128 6.128 3 C -0.154 4.154 4 C -0.112 4.112 5 C -0.108 4.108 6 C 0.015 3.985 7 C 0.093 3.907 8 H 0.065 0.935 9 C -0.503 4.503 10 H 0.061 0.939 11 C 0.067 3.933 12 N -0.882 5.882 13 Si 0.890 3.110 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.120 4.120 18 C -0.200 4.200 19 C -0.170 4.170 20 C -0.133 4.133 21 C 0.111 3.889 22 F -0.142 7.142 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.263 0.737 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 -5.800 -6.021 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.111 5.889 3 C -0.267 4.267 4 C -0.135 4.135 5 C -0.128 4.128 6 C 0.013 3.987 7 C 0.075 3.925 8 H 0.083 0.917 9 C -0.541 4.541 10 H 0.079 0.921 11 C -0.136 4.136 12 N -0.518 5.518 13 Si 0.717 3.283 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.139 4.139 18 C -0.237 4.237 19 C -0.207 4.207 20 C -0.154 4.154 21 C 0.086 3.914 22 F -0.121 7.121 23 H 0.121 0.879 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.159 -6.907 -5.891 10.441 hybrid contribution -1.027 1.230 1.107 1.947 sum -6.186 -5.676 -4.785 9.663 Atomic orbital electron populations 1.23596 0.95478 1.06397 1.05523 1.85302 1.05593 1.04013 1.94004 1.21348 0.94961 0.96580 1.13789 1.20870 0.96934 0.93134 1.02587 1.20932 0.97240 0.94038 1.00564 1.20654 0.91259 0.98215 0.88599 1.17691 0.98579 0.85306 0.90960 0.91713 1.20924 1.04800 1.35200 0.93174 0.92053 1.25000 0.94595 0.94891 0.99148 1.69918 1.09994 1.45002 1.26921 0.86563 0.79637 0.78691 0.83369 1.19579 1.20940 1.20929 1.22425 0.97916 0.96958 0.96569 1.23003 0.99194 1.06129 0.95358 1.22735 1.03233 0.92207 1.02523 1.21048 1.01379 0.89495 1.03442 1.17175 0.82805 0.86611 1.04767 1.91439 1.60557 1.66007 1.94089 0.87920 0.89919 0.89982 0.86262 0.85637 0.92691 0.89607 0.89425 0.90409 0.90450 0.88605 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.15 101.05 0.92 -0.63 16 2 S -0.13 -2.01 22.17 -107.50 -2.38 -4.40 16 3 C -0.15 -2.87 6.11 -39.01 -0.24 -3.11 16 4 C -0.11 -1.97 9.36 -39.38 -0.37 -2.34 16 5 C -0.11 -2.09 8.65 -39.60 -0.34 -2.43 16 6 C 0.02 0.33 4.78 -104.58 -0.50 -0.17 16 7 C 0.09 2.11 2.06 -92.92 -0.19 1.91 16 8 H 0.06 1.63 7.06 -51.93 -0.37 1.26 16 9 C -0.50 -12.57 7.72 -34.44 -0.27 -12.84 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.07 1.75 5.45 -17.82 -0.10 1.66 16 12 N -0.88 -24.09 12.92 55.43 0.72 -23.37 16 13 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.12 -2.32 4.92 -90.62 -0.45 -2.77 16 18 C -0.20 -3.42 10.18 -26.69 -0.27 -3.69 16 19 C -0.17 -3.04 10.02 -26.69 -0.27 -3.31 16 20 C -0.13 -2.87 9.64 -39.55 -0.38 -3.25 16 21 C 0.11 2.28 7.28 -39.24 -0.29 1.99 16 22 F -0.14 -2.90 16.76 2.25 0.04 -2.86 16 23 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 24 H 0.08 0.89 7.75 -51.92 -0.40 0.48 16 25 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16 26 H 0.12 1.71 5.88 -52.49 -0.31 1.40 16 27 H 0.13 2.28 7.78 -52.48 -0.41 1.87 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.09 1.56 7.40 -51.93 -0.38 1.18 16 30 H 0.09 1.53 8.08 -51.93 -0.42 1.11 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 34 H 0.13 2.90 7.94 -52.49 -0.42 2.48 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -27.08 306.37 -9.11 -36.18 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.34 Total: 3.34 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -2.73 Total: -28.97 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.72 Total: -23.37 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.38 Total: -4.40 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.08 -9.11 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.107 kcal (2) G-P(sol) polarization free energy of solvation -27.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds