Wall clock time and date at job start Mon Mar 30 2020 07:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76197 * 103.00050 * 2 1 4 4 C 1.38892 * 120.08289 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94103 * 180.23307 * 4 3 2 6 6 C 1.38289 * 120.11950 * 359.51375 * 5 4 3 7 7 C 1.50702 * 119.91649 * 180.23367 * 6 5 4 8 8 H 1.08995 * 109.46671 * 180.22907 * 7 6 5 9 9 C 1.50701 * 109.46960 * 60.23046 * 7 6 5 10 10 H 1.07998 * 119.99880 * 265.22045 * 9 7 6 11 11 C 1.37877 * 120.00068 * 85.22391 * 9 7 6 12 12 N 1.31518 * 119.99897 * 5.09108 * 11 9 7 13 13 Si 1.86797 * 119.99900 * 185.09046 * 11 9 7 14 14 H 1.48497 * 109.47289 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46968 * 120.00303 * 13 11 9 16 16 H 1.48500 * 109.47033 * 239.99719 * 13 11 9 17 17 C 1.52999 * 109.46992 * 300.23064 * 7 6 5 18 18 C 1.53004 * 117.49623 * 254.12904 * 17 7 6 19 19 C 1.53001 * 117.49673 * 185.46974 * 17 7 6 20 20 C 1.38307 * 120.16930 * 0.46182 * 6 5 4 21 21 C 1.38259 * 120.05406 * 359.79612 * 20 6 5 22 22 F 1.35103 * 120.05811 * 179.97438 * 21 20 6 23 23 H 1.09001 * 109.47231 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47275 * 299.99795 * 1 2 3 25 25 H 1.08996 * 109.47305 * 59.99780 * 1 2 3 26 26 H 1.08001 * 120.02995 * 359.95248 * 4 3 2 27 27 H 1.08003 * 119.93829 * 179.72442 * 5 4 3 28 28 H 0.97001 * 119.99709 * 180.02562 * 12 11 9 29 29 H 1.08994 * 115.55358 * 39.80000 * 17 7 6 30 30 H 1.09000 * 117.49652 * 0.02562 * 18 17 7 31 31 H 1.08994 * 117.49573 * 145.02600 * 18 17 7 32 32 H 1.08998 * 117.49928 * 214.97879 * 19 17 7 33 33 H 1.09007 * 117.49768 * 359.97438 * 19 17 7 34 34 H 1.07997 * 119.97425 * 179.76639 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1959 2.6655 0.0005 5 6 1.5100 4.0107 -0.0043 6 6 2.8326 4.4145 0.0004 7 6 3.1700 5.8832 0.0004 8 1 4.2529 6.0072 0.0003 9 6 2.5902 6.5318 1.2309 10 1 1.6248 7.0137 1.1833 11 6 3.2922 6.5102 2.4174 12 7 4.5092 6.0129 2.4524 13 14 2.5146 7.1872 3.9751 14 1 1.1488 7.6843 3.6709 15 1 2.4334 6.1114 4.9957 16 1 3.3433 8.3033 4.4973 17 6 2.5812 6.5417 -1.2488 18 6 3.5498 6.9199 -2.3713 19 6 2.9232 8.0117 -1.5003 20 6 3.8466 3.4738 0.0004 21 6 3.5403 2.1256 -0.0001 22 9 4.5307 1.2067 -0.0006 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.1625 2.3518 0.0002 27 1 0.7212 4.7483 -0.0084 28 1 5.0029 5.9974 3.2873 29 1 1.5868 6.2002 -1.5360 30 1 4.6064 6.6991 -2.2198 31 1 3.1924 6.8274 -3.3968 32 1 2.1538 8.6370 -1.9533 33 1 3.5673 8.5097 -0.7756 34 1 4.8784 3.7927 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260232149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:26 Heat of formation + Delta-G solvation = -19.580864 kcal Electronic energy + Delta-G solvation = -17745.741889 eV Core-core repulsion = 14877.074502 eV Total energy + Delta-G solvation = -2868.667387 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.88287 -40.17132 -37.99265 -34.91785 -32.86270 -31.59167 -29.74617 -28.97924 -25.71667 -23.65967 -23.13016 -22.91101 -20.82416 -18.87900 -18.51772 -17.47669 -17.23943 -16.69150 -16.58713 -16.32449 -15.68324 -15.08405 -14.92113 -14.52103 -14.47296 -14.27480 -13.77772 -13.35999 -13.25200 -13.10397 -12.94810 -12.74768 -12.40655 -12.22075 -12.02531 -11.79585 -11.27558 -11.14399 -11.04492 -10.54188 -10.46635 -10.21430 -9.70278 -8.30760 -8.08693 -6.20775 0.26119 0.36145 0.55980 1.39441 1.43370 1.51256 1.52482 2.41350 2.74717 3.15330 3.26968 3.31370 3.84360 4.09895 4.23614 4.30012 4.31703 4.36933 4.37192 4.49884 4.57799 4.84391 4.87995 4.90369 4.94139 5.04871 5.14727 5.23731 5.30707 5.47180 5.51931 5.70803 5.77133 5.99971 6.06131 6.32873 6.91788 7.45498 8.94673 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.006720 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.978762 B = 4165.903639 C = 4758.279169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.151 6.151 3 C -0.153 4.153 4 C -0.101 4.101 5 C -0.110 4.110 6 C -0.004 4.004 7 C 0.096 3.904 8 H 0.024 0.976 9 C -0.501 4.501 10 H 0.063 0.937 11 C 0.016 3.984 12 N -0.918 5.918 13 Si 0.944 3.056 14 H -0.258 1.258 15 H -0.289 1.289 16 H -0.285 1.285 17 C -0.137 4.137 18 C -0.185 4.185 19 C -0.167 4.167 20 C -0.151 4.151 21 C 0.090 3.910 22 F -0.147 7.147 23 H 0.131 0.869 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.161 0.839 27 H 0.140 0.860 28 H 0.259 0.741 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.211 -6.474 -6.779 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.089 5.911 3 C -0.265 4.265 4 C -0.124 4.124 5 C -0.129 4.129 6 C -0.007 4.007 7 C 0.077 3.923 8 H 0.042 0.958 9 C -0.538 4.538 10 H 0.082 0.918 11 C -0.183 4.183 12 N -0.557 5.557 13 Si 0.770 3.230 14 H -0.182 1.182 15 H -0.216 1.216 16 H -0.211 1.211 17 C -0.155 4.155 18 C -0.222 4.222 19 C -0.204 4.204 20 C -0.172 4.172 21 C 0.065 3.935 22 F -0.126 7.126 23 H 0.149 0.851 24 H 0.110 0.890 25 H 0.116 0.884 26 H 0.178 0.822 27 H 0.158 0.842 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.386 -7.580 -6.660 13.120 hybrid contribution -0.075 1.336 1.278 1.850 sum -8.461 -6.243 -5.382 11.813 Atomic orbital electron populations 1.23788 0.90755 1.08709 1.06738 1.85443 1.10727 1.01423 1.93534 1.21651 0.94216 0.98922 1.11737 1.21271 0.98598 0.91988 1.00495 1.21111 0.96325 0.95437 1.00044 1.20543 0.92441 0.97277 0.90448 1.17501 0.96179 0.86625 0.91961 0.95755 1.21226 1.04419 1.34314 0.93890 0.91847 1.25697 0.95002 0.95690 1.01906 1.70062 1.11358 1.47158 1.27082 0.85708 0.79360 0.77746 0.80145 1.18222 1.21566 1.21075 1.22352 0.99082 0.97847 0.96208 1.23036 0.98217 1.04677 0.96293 1.22757 1.03554 0.91835 1.02270 1.20959 1.00658 0.90568 1.04976 1.17324 0.83929 0.86148 1.06051 1.91413 1.60974 1.65973 1.94247 0.85096 0.88989 0.88357 0.82177 0.84177 0.93240 0.87886 0.90724 0.87362 0.87578 0.90978 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.15 113.37 1.04 -1.24 16 2 S -0.15 -4.37 22.17 -56.49 -1.25 -5.62 16 3 C -0.15 -5.46 6.11 22.64 0.14 -5.33 16 4 C -0.10 -3.24 9.36 22.40 0.21 -3.03 16 5 C -0.11 -4.06 8.65 22.26 0.19 -3.86 16 6 C 0.00 -0.19 4.78 -19.83 -0.09 -0.29 16 7 C 0.10 4.45 2.06 -12.29 -0.03 4.43 16 8 H 0.02 1.30 7.06 -2.39 -0.02 1.28 16 9 C -0.50 -25.24 7.72 25.60 0.20 -25.04 16 10 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 11 C 0.02 0.87 5.45 84.65 0.46 1.34 16 12 N -0.92 -52.34 12.92 21.45 0.28 -52.06 16 13 Si 0.94 42.41 29.54 68.60 2.03 44.43 16 14 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 15 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 C -0.14 -5.18 4.92 -10.79 -0.05 -5.23 16 18 C -0.19 -6.18 10.18 30.62 0.31 -5.86 16 19 C -0.17 -5.82 10.02 30.62 0.31 -5.51 16 20 C -0.15 -6.81 9.64 22.29 0.21 -6.60 16 21 C 0.09 3.76 7.28 22.49 0.16 3.92 16 22 F -0.15 -6.18 16.76 44.97 0.75 -5.43 16 23 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.09 1.49 7.75 -2.39 -0.02 1.48 16 25 H 0.10 1.45 7.75 -2.39 -0.02 1.43 16 26 H 0.16 3.79 5.88 -2.91 -0.02 3.77 16 27 H 0.14 4.72 7.78 -2.91 -0.02 4.70 16 28 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.10 3.53 7.40 -2.39 -0.02 3.51 16 30 H 0.07 2.66 8.08 -2.39 -0.02 2.64 16 31 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 34 H 0.11 5.35 7.94 -2.91 -0.02 5.32 16 Total: -1.00 -60.55 306.37 5.96 -54.58 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.10 Total: 16.40 kcal Atomic # 6 Polarization: -55.37 SS G_CDS: 3.06 Total: -52.31 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.28 Total: -52.06 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.75 Total: -5.43 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -1.25 Total: -5.62 kcal Total: -60.55 5.96 -54.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.003 kcal (2) G-P(sol) polarization free energy of solvation -60.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds