Wall clock time and date at job start Mon Mar 30 2020 07:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35916 * 116.99627 * 2 1 4 4 C 1.38741 * 120.10194 * 270.01593 * 3 2 1 5 5 Cl 1.73607 * 119.92170 * 359.97438 * 4 3 2 6 6 C 1.38448 * 120.15114 * 180.02562 * 4 3 2 7 7 C 1.38306 * 119.90220 * 359.97438 * 6 4 3 8 8 C 1.38490 * 119.93876 * 359.97438 * 7 6 4 9 9 C 1.38078 * 120.30939 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.04935 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.46979 * 264.99890 * 10 9 8 12 12 H 1.07993 * 119.99623 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99917 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99776 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00313 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46938 * 59.99856 * 15 13 11 17 17 H 1.48494 * 109.47583 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46993 * 300.00077 * 15 13 11 19 19 C 1.51388 * 109.73003 * 180.02562 * 7 6 4 20 20 C 1.54339 * 105.18183 * 342.79210 * 19 7 6 21 21 C 1.51685 * 130.26965 * 179.80494 * 6 4 3 22 22 H 1.09009 * 109.47121 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47549 * 299.99797 * 1 2 3 24 24 H 1.09004 * 109.47522 * 60.00118 * 1 2 3 25 25 H 1.07993 * 119.84501 * 179.97438 * 8 7 6 26 26 H 1.08998 * 109.47187 * 24.99868 * 10 9 8 27 27 H 1.08996 * 109.46789 * 145.00273 * 10 9 8 28 28 H 0.96998 * 119.99484 * 179.97438 * 14 13 11 29 29 H 1.09007 * 110.30202 * 223.86716 * 19 7 6 30 30 H 1.09001 * 110.38433 * 101.76596 * 19 7 6 31 31 H 1.09002 * 110.82153 * 144.60900 * 20 19 7 32 32 H 1.09002 * 110.82354 * 267.95655 * 20 19 7 33 33 H 1.09003 * 110.25829 * 78.28105 * 21 6 4 34 34 H 1.09001 * 110.49511 * 316.03330 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 2.3615 1.8312 -1.2003 5 17 1.9680 1.0582 -2.7041 6 6 2.9905 3.0646 -1.2015 7 6 3.3042 3.6797 -0.0031 8 6 2.9882 3.0610 1.1949 9 6 2.3609 1.8309 1.1997 10 6 2.0202 1.1627 2.5068 11 6 3.1189 0.2012 2.8808 12 1 3.9780 0.0860 2.2366 13 6 3.0271 -0.5312 4.0452 14 7 1.9811 -0.3905 4.8299 15 14 4.3891 -1.7225 4.5092 16 1 5.6679 -0.9811 4.6515 17 1 4.0534 -2.3810 5.7971 18 1 4.5292 -2.7518 3.4481 19 6 3.9804 5.0073 -0.2718 20 6 4.4387 4.9369 -1.7439 21 6 3.4384 3.9357 -2.3597 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 3.2342 3.5425 2.1297 26 1 1.9182 1.9185 3.2855 27 1 1.0814 0.6189 2.4029 28 1 1.9164 -0.9061 5.6490 29 1 4.8402 5.1338 0.3863 30 1 3.2756 5.8272 -0.1338 31 1 4.3549 5.9125 -2.2228 32 1 5.4586 4.5588 -1.8146 33 1 2.5862 4.4658 -2.7849 34 1 3.9289 3.3323 -3.1236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260235747.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:13 Heat of formation + Delta-G solvation = -52.733875 kcal Electronic energy + Delta-G solvation = -17996.436955 eV Core-core repulsion = 15111.915449 eV Total energy + Delta-G solvation = -2884.521506 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43113 -39.27566 -37.48167 -36.44096 -34.87831 -32.47267 -31.09257 -29.16040 -27.80588 -27.23067 -24.98887 -23.31518 -21.72113 -21.17295 -18.55625 -18.16147 -17.75179 -16.79686 -16.59775 -16.32629 -16.12158 -15.28585 -14.68870 -14.49546 -14.22537 -13.85351 -13.74139 -13.44213 -13.27172 -13.01142 -12.70061 -12.61651 -12.49142 -12.39927 -12.21028 -12.03358 -11.84071 -11.77368 -11.56755 -11.21546 -10.80211 -10.57879 -9.49866 -9.20421 -8.20267 -6.31154 0.10911 0.28724 1.14710 1.37494 1.40555 1.48501 2.35969 2.49017 2.88192 3.11016 3.56203 3.61326 4.18410 4.20678 4.24897 4.26076 4.35078 4.39739 4.45427 4.67771 4.72985 4.87566 4.92431 5.00549 5.05322 5.10564 5.18738 5.27348 5.33057 5.40771 5.50307 5.72565 5.76837 5.81254 6.15859 6.58668 6.77371 7.35499 8.89133 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.006663 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.583073 B = 4201.221207 C = 4972.927821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.339 6.339 3 C 0.081 3.919 4 C -0.050 4.050 5 Cl -0.063 7.063 6 C -0.106 4.106 7 C -0.091 4.091 8 C -0.107 4.107 9 C -0.075 4.075 10 C 0.070 3.930 11 C -0.519 4.519 12 H 0.045 0.955 13 C 0.009 3.991 14 N -0.928 5.928 15 Si 0.960 3.040 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.274 1.274 19 C -0.076 4.076 20 C -0.110 4.110 21 C -0.072 4.072 22 H 0.107 0.893 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.128 0.872 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.265 0.735 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 10.527 -14.414 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.256 6.256 3 C 0.037 3.963 4 C -0.077 4.077 5 Cl -0.034 7.034 6 C -0.107 4.107 7 C -0.092 4.092 8 C -0.125 4.125 9 C -0.076 4.076 10 C 0.033 3.967 11 C -0.557 4.557 12 H 0.064 0.936 13 C -0.189 4.189 14 N -0.568 5.568 15 Si 0.784 3.216 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.199 1.199 19 C -0.113 4.113 20 C -0.147 4.147 21 C -0.109 4.109 22 H 0.125 0.875 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.146 0.854 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.371 10.219 -14.393 17.705 hybrid contribution -0.002 -1.143 0.749 1.366 sum 1.369 9.076 -13.644 16.444 Atomic orbital electron populations 1.23041 0.78232 1.04135 1.00223 1.86042 1.20876 1.24516 1.94159 1.18267 1.00147 0.87276 0.90644 1.20950 1.05872 0.94794 0.86104 1.98302 1.92833 1.81390 1.30854 1.20684 0.99052 0.92559 0.98400 1.20945 0.98723 0.98206 0.91309 1.20645 0.99077 0.94219 0.98563 1.20638 0.97287 0.94136 0.95547 1.17927 0.96269 0.94193 0.88306 1.21186 1.05298 1.23182 1.06058 0.93645 1.25796 0.98305 0.98637 0.96145 1.70052 1.30447 1.42641 1.13661 0.85585 0.79469 0.79008 0.77536 1.19156 1.20169 1.19917 1.21157 1.00099 0.91865 0.98203 1.22327 0.98610 1.00203 0.93572 1.21160 0.99936 0.95640 0.94139 0.87462 0.94708 0.92461 0.85435 0.97379 0.97200 0.92568 0.89636 0.88312 0.87398 0.90565 0.88620 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.80 113.37 1.22 2.56 16 2 O -0.34 -15.07 9.15 -92.61 -0.85 -15.91 16 3 C 0.08 3.50 5.69 22.49 0.13 3.63 16 4 C -0.05 -1.81 6.33 22.44 0.14 -1.67 16 5 Cl -0.06 -1.95 28.25 -2.72 -0.08 -2.03 16 6 C -0.11 -3.26 6.05 -19.48 -0.12 -3.37 16 7 C -0.09 -2.84 6.14 -19.57 -0.12 -2.96 16 8 C -0.11 -4.15 9.67 22.29 0.22 -3.93 16 9 C -0.08 -3.47 5.08 -19.80 -0.10 -3.57 16 10 C 0.07 3.82 4.83 29.11 0.14 3.96 16 11 C -0.52 -30.68 9.09 25.60 0.23 -30.44 16 12 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 13 C 0.01 0.54 5.46 84.65 0.46 1.01 16 14 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 15 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 19 C -0.08 -1.57 6.77 30.52 0.21 -1.36 16 20 C -0.11 -1.77 7.07 31.50 0.22 -1.55 16 21 C -0.07 -1.50 6.49 30.62 0.20 -1.30 16 22 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 23 H 0.03 1.31 7.18 -2.39 -0.02 1.29 16 24 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 26 H 0.01 0.45 8.05 -2.39 -0.02 0.43 16 27 H 0.01 0.57 6.43 -2.39 -0.02 0.56 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -68.32 301.92 5.32 -63.00 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.10 Total: 2.38 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 2.83 Total: -39.00 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.85 Total: -15.91 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Total: -68.32 5.32 -63.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260235747.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.263 kcal (2) G-P(sol) polarization free energy of solvation -68.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds