Wall clock time and date at job start Mon Mar 30 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38191 * 120.01991 * 2 1 4 4 C 1.38232 * 120.07953 * 179.97438 * 3 2 1 5 5 C 1.38293 * 120.11346 * 0.03024 * 4 3 2 6 6 C 1.50707 * 119.97387 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46873 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47086 * 299.99872 * 6 5 4 9 9 H 1.07999 * 120.00184 * 359.97438 * 8 6 5 10 10 C 1.37877 * 119.99998 * 180.02562 * 8 6 5 11 11 N 1.31518 * 119.99887 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00420 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46836 * 59.99768 * 12 10 8 14 14 H 1.48497 * 109.47401 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46773 * 299.99876 * 12 10 8 16 16 C 1.52998 * 109.47224 * 59.99977 * 6 5 4 17 17 C 1.52999 * 117.50348 * 128.74547 * 16 6 5 18 18 C 1.53003 * 117.50102 * 60.08138 * 16 6 5 19 19 C 1.38208 * 120.04523 * 359.71683 * 5 4 3 20 20 Cl 1.73599 * 120.03945 * 180.29668 * 19 5 4 21 21 C 1.38665 * 120.01983 * 180.02562 * 2 1 3 22 22 O 1.35919 * 120.06170 * 359.97438 * 21 2 1 23 23 H 1.09001 * 109.47481 * 269.97275 * 1 2 3 24 24 H 1.08998 * 109.47153 * 29.97829 * 1 2 3 25 25 H 1.09007 * 109.47083 * 149.97602 * 1 2 3 26 26 H 1.07999 * 119.96269 * 0.02562 * 3 2 1 27 27 H 1.07995 * 119.94165 * 180.02562 * 4 3 2 28 28 H 0.97001 * 120.00066 * 179.97438 * 11 10 8 29 29 H 1.09003 * 115.54686 * 274.41654 * 16 6 5 30 30 H 1.09005 * 117.49299 * 359.97438 * 17 16 6 31 31 H 1.08994 * 117.50172 * 145.01537 * 17 16 6 32 32 H 1.09000 * 117.50232 * 214.97837 * 18 16 6 33 33 H 1.08998 * 117.49523 * 0.02562 * 18 16 6 34 34 H 0.96700 * 114.00199 * 90.00156 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1965 0.0000 4 6 3.5807 1.1980 0.0005 5 6 4.2758 0.0024 0.0004 6 6 5.7828 0.0076 0.0016 7 1 6.1497 -1.0188 0.0018 8 6 6.2836 0.7204 -1.2281 9 1 5.5810 1.1284 -1.9396 10 6 7.6389 0.8507 -1.4454 11 7 8.4946 0.3535 -0.5793 12 14 8.2598 1.7336 -2.9700 13 1 7.7603 3.1321 -2.9700 14 1 9.7448 1.7389 -2.9688 15 1 7.7678 1.0322 -4.1830 16 6 6.2894 0.7300 1.2516 17 6 7.3275 0.0080 2.1129 18 6 5.8877 0.1551 2.6114 19 6 3.5893 -1.1971 0.0057 20 17 4.4620 -2.6978 0.0134 21 6 2.2008 -1.2006 -0.0005 22 8 1.5228 -2.3787 -0.0005 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6581 2.1317 0.0004 27 1 4.1188 2.1343 0.0010 28 1 9.4481 0.4448 -0.7324 29 1 6.3710 1.8137 1.1676 30 1 7.6493 -0.9819 1.7892 31 1 8.0919 0.6167 2.5959 32 1 5.7055 0.8604 3.4222 33 1 5.2629 -0.7380 2.6154 34 1 1.3263 -2.7194 -0.8839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260247817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:37 Heat of formation + Delta-G solvation = -28.293334 kcal Electronic energy + Delta-G solvation = -18195.353715 eV Core-core repulsion = 15311.892031 eV Total energy + Delta-G solvation = -2883.461684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95681 -38.73418 -37.27055 -37.18430 -34.69491 -33.61876 -30.63355 -30.35115 -27.06191 -24.80853 -23.58879 -22.91811 -22.28979 -20.87443 -18.93614 -18.25065 -17.11995 -16.93450 -16.48103 -16.26662 -15.72872 -15.04023 -14.74425 -14.38829 -14.10526 -13.95188 -13.50796 -13.26192 -12.95878 -12.82317 -12.71778 -12.48062 -12.19779 -12.13365 -11.95089 -11.90024 -11.64763 -11.60207 -11.21903 -10.61650 -10.50196 -10.15344 -9.43613 -9.19030 -8.00860 -6.13505 0.28049 0.43216 1.37201 1.44141 1.45105 1.51626 2.45913 2.73121 3.23298 3.26004 3.40315 3.97281 4.12734 4.25289 4.39722 4.42525 4.51266 4.64264 4.69541 4.86242 4.90166 4.93639 5.00792 5.13442 5.31747 5.33702 5.36862 5.50285 5.52790 5.60868 5.68958 5.83197 5.95998 6.10349 6.37978 6.79941 6.93046 7.51792 9.03004 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.007308 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.271676 B = 3830.386401 C = 4112.019142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.123 4.123 3 C -0.098 4.098 4 C -0.116 4.116 5 C -0.035 4.035 6 C 0.101 3.899 7 H 0.027 0.973 8 C -0.527 4.527 9 H 0.050 0.950 10 C 0.026 3.974 11 N -0.895 5.895 12 Si 0.943 3.057 13 H -0.271 1.271 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.093 4.093 17 C -0.140 4.140 18 C -0.195 4.195 19 C -0.087 4.087 20 Cl -0.077 7.077 21 C 0.106 3.894 22 O -0.490 6.490 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.158 0.842 27 H 0.126 0.874 28 H 0.258 0.742 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 -0.108 1.428 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.134 4.134 5 C -0.036 4.036 6 C 0.082 3.918 7 H 0.045 0.955 8 C -0.565 4.565 9 H 0.068 0.932 10 C -0.176 4.176 11 N -0.532 5.532 12 Si 0.770 3.230 13 H -0.196 1.196 14 H -0.213 1.213 15 H -0.204 1.204 16 C -0.112 4.112 17 C -0.177 4.177 18 C -0.232 4.232 19 C -0.114 4.114 20 Cl -0.048 7.048 21 C 0.060 3.940 22 O -0.302 6.302 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.175 0.825 27 H 0.144 0.856 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -13.284 -0.228 2.069 13.446 hybrid contribution 1.235 0.023 -1.327 1.813 sum -12.048 -0.205 0.742 12.073 Atomic orbital electron populations 1.20632 0.87772 1.03770 1.03056 1.20333 0.98279 0.91011 1.02795 1.21308 0.93155 0.98516 0.98575 1.21087 0.94426 0.97367 1.00514 1.20200 0.97847 0.91271 0.94304 1.17470 0.85497 0.96367 0.92417 0.95478 1.21191 0.91636 1.37103 1.06535 0.93177 1.25575 0.97218 0.96233 0.98525 1.70138 1.01795 1.45255 1.36024 0.85848 0.76948 0.79460 0.80742 1.19625 1.21298 1.20374 1.21992 1.01907 0.97085 0.90209 1.22334 0.90972 1.00939 1.03486 1.23026 0.98409 1.02876 0.98864 1.21510 0.91977 0.87396 1.10530 1.98305 1.76927 1.32461 1.97098 1.18022 0.86909 0.86651 1.02421 1.84770 1.75509 1.35283 1.34668 0.90677 0.89736 0.90771 0.82468 0.85635 0.93330 0.91183 0.91730 0.90520 0.88491 0.90817 0.73961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.79 71.24 0.70 -1.10 16 2 C -0.12 -3.39 5.89 -19.77 -0.12 -3.51 16 3 C -0.10 -2.79 9.70 22.26 0.22 -2.57 16 4 C -0.12 -4.22 8.82 22.28 0.20 -4.03 16 5 C -0.04 -1.49 4.39 -19.86 -0.09 -1.58 16 6 C 0.10 4.93 2.00 -12.29 -0.02 4.90 16 7 H 0.03 1.47 5.92 -2.39 -0.01 1.45 16 8 C -0.53 -28.07 8.22 25.60 0.21 -27.86 16 9 H 0.05 2.66 7.60 -2.91 -0.02 2.64 16 10 C 0.03 1.37 5.30 84.65 0.45 1.82 16 11 N -0.89 -49.84 11.43 21.45 0.25 -49.60 16 12 Si 0.94 42.92 29.54 68.60 2.03 44.95 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 C -0.09 -4.32 3.87 -10.79 -0.04 -4.36 16 17 C -0.14 -6.29 9.04 30.62 0.28 -6.02 16 18 C -0.19 -7.80 9.87 30.62 0.30 -7.50 16 19 C -0.09 -3.39 6.33 22.41 0.14 -3.25 16 20 Cl -0.08 -3.03 26.55 -2.72 -0.07 -3.10 16 21 C 0.11 3.39 6.67 22.52 0.15 3.54 16 22 O -0.49 -13.27 12.01 -92.63 -1.11 -14.38 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 25 H 0.07 1.25 7.53 -2.38 -0.02 1.23 16 26 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.13 4.65 8.05 -2.91 -0.02 4.62 16 28 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.07 3.38 8.11 -2.39 -0.02 3.36 16 30 H 0.06 3.16 8.05 -2.38 -0.02 3.14 16 31 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.40 7.37 9.06 -74.06 -0.67 6.69 16 Total: -1.00 -61.19 302.08 3.90 -57.29 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.44 Total: 16.36 kcal Atomic # 6 Polarization: -53.88 SS G_CDS: 2.37 Total: -51.51 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.25 Total: -49.60 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.11 Total: -14.38 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.07 Total: -3.10 kcal Total: -61.19 3.90 -57.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260247817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.993 kcal (2) G-P(sol) polarization free energy of solvation -61.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds