Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38269 * 119.96776 * 89.99781 * 10 9 7 12 12 C 1.38364 * 120.09794 * 179.97438 * 11 10 9 13 13 Cl 1.73602 * 119.98229 * 179.97438 * 12 11 10 14 14 C 1.38278 * 120.02915 * 359.97438 * 12 11 10 15 15 C 1.38686 * 119.93099 * 0.02562 * 14 12 11 16 16 O 1.35909 * 120.04731 * 179.97438 * 15 14 12 17 17 C 1.42903 * 116.99552 * 359.97438 * 16 15 14 18 18 C 1.53008 * 109.46524 * 180.02562 * 17 16 15 19 19 C 1.52994 * 117.49542 * 243.61875 * 18 17 16 20 20 C 1.52995 * 117.49363 * 174.99890 * 18 17 16 21 21 C 1.38130 * 119.96397 * 269.72470 * 10 9 7 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.07997 * 119.94626 * 359.97438 * 11 10 9 26 26 H 1.08000 * 120.03066 * 179.97438 * 14 12 11 27 27 H 1.08994 * 109.46890 * 299.99631 * 17 16 15 28 28 H 1.08991 * 109.47368 * 60.00110 * 17 16 15 29 29 H 1.09000 * 115.55245 * 29.32929 * 18 17 16 30 30 H 1.09004 * 117.50258 * 0.02562 * 19 18 17 31 31 H 1.09004 * 117.49729 * 145.02476 * 19 18 17 32 32 H 1.09002 * 117.49645 * 214.97806 * 20 18 17 33 33 H 1.08997 * 117.50430 * 359.97438 * 20 18 17 34 34 H 1.08004 * 120.01887 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6790 -4.1696 1.1984 12 6 3.5777 -5.2217 1.2015 13 17 4.1398 -5.8780 2.7072 14 6 4.0283 -5.7504 0.0059 15 6 3.5789 -5.2248 -1.1962 16 8 4.0206 -5.7424 -2.3727 17 6 4.9479 -6.8270 -2.2968 18 6 5.3286 -7.2724 -3.7102 19 6 4.9422 -8.6914 -4.1318 20 6 6.4059 -8.3504 -3.8450 21 6 2.6741 -4.1728 -1.1961 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.3276 -3.7578 2.1328 26 1 4.7301 -6.5713 0.0083 27 1 5.8426 -6.5035 -1.7648 28 1 4.4897 -7.6602 -1.7640 29 1 5.2970 -6.4942 -4.4728 30 1 4.4165 -9.3077 -3.4024 31 1 4.6562 -8.8471 -5.1721 32 1 7.0828 -8.2816 -4.6966 33 1 6.8437 -8.7420 -2.9269 34 1 2.3199 -3.7648 -2.1313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260256637.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = -12.148880 kcal Electronic energy + Delta-G solvation = -16966.729619 eV Core-core repulsion = 14083.968011 eV Total energy + Delta-G solvation = -2882.761608 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.93877 -38.03611 -36.79274 -36.05772 -33.30750 -31.16389 -29.96311 -27.53812 -27.01395 -23.47812 -22.67963 -22.11827 -21.14474 -20.26602 -17.52771 -16.52162 -16.33673 -15.76674 -15.57218 -15.04912 -14.69948 -14.34155 -14.20239 -13.13350 -13.09121 -12.64055 -12.24241 -12.00567 -11.75492 -11.64392 -11.53760 -11.23676 -10.98557 -10.79383 -10.72994 -10.60855 -10.54651 -10.49572 -10.09688 -9.66949 -9.47472 -8.45961 -8.09708 -7.80222 -6.08502 -4.12755 1.65893 1.85676 2.41319 3.13436 3.31435 3.35385 3.38767 3.59014 4.15511 4.44185 4.49878 4.60247 4.75204 5.00385 5.14241 5.21247 5.26964 5.33931 5.37690 5.50480 5.58806 5.60187 5.81151 5.89103 5.97472 6.14501 6.23037 6.57938 6.70707 6.96605 7.18886 7.45862 7.63764 7.72592 7.86859 8.23481 8.91549 9.51423 11.01564 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.004744 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.674456 B = 5900.708265 C = 7037.368343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.048 3.952 10 C 0.016 3.984 11 C -0.146 4.146 12 C 0.005 3.995 13 Cl -0.087 7.087 14 C -0.230 4.230 15 C 0.137 3.863 16 O -0.310 6.310 17 C 0.091 3.909 18 C -0.154 4.154 19 C -0.176 4.176 20 C -0.172 4.172 21 C -0.148 4.148 22 H 0.264 0.736 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.683 -15.522 -3.543 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.012 3.988 10 C 0.016 3.984 11 C -0.165 4.165 12 C -0.022 4.022 13 Cl -0.059 7.059 14 C -0.249 4.249 15 C 0.092 3.908 16 O -0.224 6.224 17 C 0.015 3.985 18 C -0.173 4.173 19 C -0.213 4.213 20 C -0.209 4.209 21 C -0.167 4.167 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.150 0.850 26 H 0.144 0.856 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.529 -15.411 -3.605 18.474 hybrid contribution 0.700 0.718 0.323 1.053 sum 10.228 -14.694 -3.282 18.202 Atomic orbital electron populations 1.69940 1.06038 1.27092 1.50048 1.24987 0.94892 0.99275 0.94969 0.86572 0.79538 0.82646 0.78811 1.20098 1.21181 1.20090 1.20973 0.93084 0.89622 1.51690 0.92349 1.18419 0.92341 0.89074 0.99004 1.20496 0.94203 0.93558 0.90150 1.20961 0.99324 0.96573 0.99680 1.20578 0.98820 0.97137 0.85624 1.98326 1.88719 1.85659 1.33174 1.20740 1.07744 1.05663 0.90790 1.18786 0.94594 0.93847 0.83582 1.86062 1.59534 1.48591 1.28199 1.22241 0.91969 0.88533 0.95740 1.22114 1.04313 0.93164 0.97667 1.23095 0.97715 0.97747 1.02781 1.22980 0.92099 1.02204 1.03590 1.20513 0.99718 0.96690 0.99785 0.92667 0.94683 0.94674 0.85023 0.85577 0.91705 0.92031 0.86473 0.88545 0.88443 0.88247 0.88568 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.17 9.09 -34.44 -0.31 -14.49 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 10 C 0.02 0.35 5.07 -104.65 -0.53 -0.18 16 11 C -0.15 -2.86 9.48 -39.52 -0.37 -3.24 16 12 C 0.00 0.09 6.32 -39.52 -0.25 -0.16 16 13 Cl -0.09 -1.31 28.95 -51.86 -1.50 -2.82 16 14 C -0.23 -3.74 8.82 -39.40 -0.35 -4.08 16 15 C 0.14 2.39 6.69 -39.22 -0.26 2.13 16 16 O -0.31 -4.89 10.14 -19.45 -0.20 -5.09 16 17 C 0.09 1.07 5.02 37.16 0.19 1.25 16 18 C -0.15 -1.54 6.06 -90.62 -0.55 -2.09 16 19 C -0.18 -1.46 10.18 -26.74 -0.27 -1.73 16 20 C -0.17 -1.32 10.25 -26.74 -0.27 -1.59 16 21 C -0.15 -2.93 9.64 -39.43 -0.38 -3.31 16 22 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 23 H 0.03 0.91 8.09 -51.93 -0.42 0.49 16 24 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 25 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 26 H 0.13 1.72 6.30 -52.49 -0.33 1.39 16 27 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 28 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 29 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.13 2.61 8.06 -52.48 -0.42 2.18 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -28.71 310.69 -9.36 -38.06 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.45 Total: -1.14 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -3.61 Total: -24.83 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.74 Total: -25.17 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.20 Total: -5.09 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.71 -9.36 -38.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256637.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.916 kcal (2) G-P(sol) polarization free energy of solvation -28.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds