Wall clock time and date at job start Mon Mar 30 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38269 * 119.96776 * 89.99781 * 10 9 7 12 12 C 1.38364 * 120.09794 * 179.97438 * 11 10 9 13 13 Cl 1.73602 * 119.98229 * 179.97438 * 12 11 10 14 14 C 1.38278 * 120.02915 * 359.97438 * 12 11 10 15 15 C 1.38686 * 119.93099 * 0.02562 * 14 12 11 16 16 O 1.35909 * 120.04731 * 179.97438 * 15 14 12 17 17 C 1.42903 * 116.99552 * 359.97438 * 16 15 14 18 18 C 1.53008 * 109.46524 * 180.02562 * 17 16 15 19 19 C 1.52994 * 117.49542 * 243.61875 * 18 17 16 20 20 C 1.52995 * 117.49363 * 174.99890 * 18 17 16 21 21 C 1.38130 * 119.96397 * 269.72470 * 10 9 7 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.07997 * 119.94626 * 359.97438 * 11 10 9 26 26 H 1.08000 * 120.03066 * 179.97438 * 14 12 11 27 27 H 1.08994 * 109.46890 * 299.99631 * 17 16 15 28 28 H 1.08991 * 109.47368 * 60.00110 * 17 16 15 29 29 H 1.09000 * 115.55245 * 29.32929 * 18 17 16 30 30 H 1.09004 * 117.50258 * 0.02562 * 19 18 17 31 31 H 1.09004 * 117.49729 * 145.02476 * 19 18 17 32 32 H 1.09002 * 117.49645 * 214.97806 * 20 18 17 33 33 H 1.08997 * 117.50430 * 359.97438 * 20 18 17 34 34 H 1.08004 * 120.01887 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6790 -4.1696 1.1984 12 6 3.5777 -5.2217 1.2015 13 17 4.1398 -5.8780 2.7072 14 6 4.0283 -5.7504 0.0059 15 6 3.5789 -5.2248 -1.1962 16 8 4.0206 -5.7424 -2.3727 17 6 4.9479 -6.8270 -2.2968 18 6 5.3286 -7.2724 -3.7102 19 6 4.9422 -8.6914 -4.1318 20 6 6.4059 -8.3504 -3.8450 21 6 2.6741 -4.1728 -1.1961 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.3276 -3.7578 2.1328 26 1 4.7301 -6.5713 0.0083 27 1 5.8426 -6.5035 -1.7648 28 1 4.4897 -7.6602 -1.7640 29 1 5.2970 -6.4942 -4.4728 30 1 4.4165 -9.3077 -3.4024 31 1 4.6562 -8.8471 -5.1721 32 1 7.0828 -8.2816 -4.6966 33 1 6.8437 -8.7420 -2.9269 34 1 2.3199 -3.7648 -2.1313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260256637.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:55 Heat of formation + Delta-G solvation = -25.720725 kcal Electronic energy + Delta-G solvation = -16967.318138 eV Core-core repulsion = 14083.968011 eV Total energy + Delta-G solvation = -2883.350127 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24874 -39.18866 -37.77432 -37.37589 -35.27996 -32.91091 -31.32878 -29.10647 -28.31760 -25.37424 -23.56691 -23.25539 -22.38129 -21.38082 -18.90093 -18.46101 -17.60240 -17.00493 -16.89132 -16.55224 -16.08666 -15.74798 -15.07088 -14.62631 -14.48266 -14.18035 -13.96472 -13.39186 -13.12791 -13.01102 -12.77393 -12.49372 -12.47252 -12.37281 -12.10851 -12.01884 -11.93900 -11.56810 -11.39364 -11.34085 -10.87709 -10.60298 -9.64694 -9.21315 -8.21370 -6.33953 0.18945 0.38809 1.05188 1.41429 1.43684 1.51907 2.06534 2.39234 2.69668 2.88353 3.10998 3.71203 3.86779 3.89911 3.99352 4.05137 4.14496 4.22291 4.34378 4.47885 4.55886 4.61639 4.72999 4.78602 5.00963 5.11082 5.16310 5.22535 5.23514 5.24533 5.31940 5.66840 5.72459 5.86687 6.13691 6.39119 6.77262 7.34496 8.88547 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.004744 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.674456 B = 5900.708265 C = 7037.368343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.057 3.943 10 C -0.005 4.005 11 C -0.159 4.159 12 C 0.008 3.992 13 Cl -0.060 7.060 14 C -0.214 4.214 15 C 0.146 3.854 16 O -0.321 6.321 17 C 0.082 3.918 18 C -0.177 4.177 19 C -0.176 4.176 20 C -0.154 4.154 21 C -0.164 4.164 22 H 0.267 0.733 23 H 0.014 0.986 24 H 0.012 0.988 25 H 0.127 0.873 26 H 0.161 0.839 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.079 -16.976 -3.493 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.005 4.005 11 C -0.178 4.178 12 C -0.018 4.018 13 Cl -0.031 7.031 14 C -0.233 4.233 15 C 0.100 3.900 16 O -0.236 6.236 17 C 0.008 3.992 18 C -0.195 4.195 19 C -0.213 4.213 20 C -0.191 4.191 21 C -0.183 4.183 22 H 0.075 0.925 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.145 0.855 26 H 0.178 0.822 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.939 -16.885 -3.559 20.984 hybrid contribution 0.010 1.018 0.287 1.057 sum 11.949 -15.868 -3.272 20.131 Atomic orbital electron populations 1.70059 1.07587 1.28118 1.50915 1.25869 0.95743 1.02954 0.94426 0.85520 0.78347 0.78187 0.79155 1.19369 1.20481 1.19245 1.21298 0.93144 0.91023 1.51541 0.92630 1.18143 0.92688 0.90423 0.96754 1.20080 0.95007 0.93638 0.91784 1.20877 1.00449 0.97753 0.98682 1.20583 0.97811 0.96214 0.87231 1.98336 1.88208 1.85039 1.31536 1.21047 1.07044 1.05579 0.89620 1.18667 0.93584 0.92919 0.84783 1.86071 1.60270 1.49803 1.27412 1.22584 0.91535 0.87653 0.97425 1.22087 1.07091 0.93862 0.96484 1.23201 0.98504 0.96248 1.03336 1.23101 0.91793 0.99644 1.04533 1.20417 1.01037 0.98063 0.98782 0.92455 0.96802 0.97006 0.85514 0.82189 0.90641 0.90653 0.87556 0.88067 0.87819 0.87059 0.87353 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.53 -30.22 9.09 25.60 0.23 -29.99 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.06 3.01 5.10 29.10 0.15 3.16 16 10 C 0.00 -0.20 5.07 -19.88 -0.10 -0.30 16 11 C -0.16 -6.25 9.48 22.31 0.21 -6.04 16 12 C 0.01 0.27 6.32 22.31 0.14 0.42 16 13 Cl -0.06 -1.66 28.95 -2.72 -0.08 -1.73 16 14 C -0.21 -6.42 8.82 22.39 0.20 -6.22 16 15 C 0.15 4.96 6.69 22.50 0.15 5.11 16 16 O -0.32 -9.72 10.14 -92.53 -0.94 -10.66 16 17 C 0.08 1.73 5.02 71.98 0.36 2.09 16 18 C -0.18 -3.16 6.06 -10.79 -0.07 -3.22 16 19 C -0.18 -2.47 10.18 30.59 0.31 -2.16 16 20 C -0.15 -1.88 10.25 30.59 0.31 -1.56 16 21 C -0.16 -6.65 9.64 22.37 0.22 -6.43 16 22 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 23 H 0.01 0.77 8.09 -2.39 -0.02 0.75 16 24 H 0.01 0.66 8.08 -2.39 -0.02 0.64 16 25 H 0.13 5.00 8.06 -2.91 -0.02 4.97 16 26 H 0.16 3.69 6.30 -2.91 -0.02 3.67 16 27 H 0.08 1.43 7.66 -2.39 -0.02 1.41 16 28 H 0.08 1.38 7.39 -2.39 -0.02 1.36 16 29 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 30 H 0.10 1.33 8.03 -2.38 -0.02 1.31 16 31 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -62.55 310.69 4.97 -57.59 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.09 Total: 7.94 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 2.58 Total: -44.19 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.94 Total: -10.66 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.73 kcal Total: -62.55 4.97 -57.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256637.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.868 kcal (2) G-P(sol) polarization free energy of solvation -62.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds