Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00135 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99816 * 3 2 1 5 5 H 1.48496 * 109.47231 * 30.00066 * 3 2 1 6 6 H 1.48500 * 109.47288 * 149.99987 * 3 2 1 7 7 C 1.37881 * 119.99623 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.46938 * 179.97438 * 9 7 2 11 11 C 1.38274 * 119.94070 * 89.99978 * 10 9 7 12 12 C 1.38154 * 120.08085 * 180.02562 * 11 10 9 13 13 C 1.38709 * 119.95007 * 359.97438 * 12 11 10 14 14 O 1.35926 * 120.05683 * 180.02562 * 13 12 11 15 15 C 1.42904 * 116.99872 * 6.05239 * 14 13 12 16 16 C 1.53779 * 113.61823 * 255.33828 * 15 14 13 17 17 C 1.53775 * 87.08433 * 220.01949 * 16 15 14 18 18 C 1.53781 * 87.08220 * 25.43191 * 17 16 15 19 19 C 1.38813 * 119.88502 * 0.27654 * 13 12 11 20 20 Cl 1.73603 * 120.03775 * 179.70489 * 19 13 12 21 21 C 1.38250 * 119.93939 * 270.02068 * 10 9 7 22 22 H 0.96997 * 119.99452 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47504 * 60.00432 * 9 7 2 24 24 H 1.09002 * 109.47624 * 299.99580 * 9 7 2 25 25 H 1.08006 * 119.96459 * 359.97438 * 11 10 9 26 26 H 1.08001 * 120.02513 * 179.97438 * 12 11 10 27 27 H 1.09002 * 112.84784 * 26.65075 * 15 14 13 28 28 H 1.09004 * 113.61286 * 334.57419 * 16 15 14 29 29 H 1.09001 * 113.60986 * 105.46705 * 16 15 14 30 30 H 1.08997 * 113.61483 * 270.88518 * 17 16 15 31 31 H 1.09003 * 113.61701 * 139.98050 * 17 16 15 32 32 H 1.09000 * 113.61977 * 220.01879 * 18 17 16 33 33 H 1.09004 * 113.68656 * 89.12509 * 18 17 16 34 34 H 1.08002 * 119.97836 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6787 -4.1692 1.1987 12 6 3.5768 -5.2190 1.2021 13 6 4.0287 -5.7476 0.0019 14 8 4.9119 -6.7808 0.0027 15 6 5.2310 -7.3605 1.2693 16 6 6.6183 -6.9602 1.7983 17 6 6.7695 -8.4143 2.2750 18 6 5.7701 -8.7975 1.1708 19 6 3.5814 -5.2162 -1.1999 20 17 4.1502 -5.8697 -2.7043 21 6 2.6789 -4.1688 -1.1975 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.3271 -3.7573 2.1332 26 1 3.9268 -5.6277 2.1385 27 1 4.4323 -7.2431 2.0018 28 1 7.3216 -6.6826 1.0131 29 1 6.5829 -6.2354 2.6117 30 1 6.3925 -8.5846 3.2834 31 1 7.7683 -8.8228 2.1209 32 1 5.0499 -9.5560 1.4776 33 1 6.2402 -9.0227 0.2136 34 1 2.3277 -3.7568 -2.1320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260256716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = -11.737274 kcal Electronic energy + Delta-G solvation = -17291.904590 eV Core-core repulsion = 14409.160830 eV Total energy + Delta-G solvation = -2882.743760 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23658 -38.44218 -36.25086 -35.99680 -33.18407 -30.71262 -30.33160 -26.94199 -25.87268 -25.33886 -23.14962 -22.33774 -20.57262 -19.60013 -18.26877 -16.37169 -16.13336 -15.60571 -15.33677 -14.87103 -14.47502 -14.27752 -13.69508 -13.31893 -12.90494 -12.65321 -12.37939 -12.14419 -11.78409 -11.58662 -11.47175 -11.29711 -10.93558 -10.84431 -10.68070 -10.62299 -10.43201 -10.35574 -10.25152 -9.61656 -9.38426 -8.45987 -8.37322 -7.47970 -6.07445 -4.11883 1.66562 1.88991 2.60016 3.29155 3.35500 3.35994 3.39451 4.15183 4.36239 4.36804 4.44943 4.62245 4.64404 5.03274 5.21155 5.27939 5.43765 5.44840 5.55365 5.63910 5.72868 5.81968 5.84162 5.92673 5.98511 6.14412 6.24420 6.59819 6.84497 7.00056 7.21163 7.48478 7.66813 7.72707 7.87983 8.26744 8.93288 9.52490 11.02076 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.004620 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.213812 B = 6059.620085 C = 6605.976289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.052 3.948 10 C -0.055 4.055 11 C -0.081 4.081 12 C -0.198 4.198 13 C 0.106 3.894 14 O -0.297 6.297 15 C 0.055 3.945 16 C -0.157 4.157 17 C -0.140 4.140 18 C -0.131 4.131 19 C -0.064 4.064 20 Cl -0.079 7.079 21 C -0.079 4.079 22 H 0.262 0.738 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.917 -15.388 3.142 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.015 3.985 10 C -0.056 4.056 11 C -0.099 4.099 12 C -0.217 4.217 13 C 0.061 3.939 14 O -0.211 6.211 15 C -0.002 4.002 16 C -0.195 4.195 17 C -0.178 4.178 18 C -0.168 4.168 19 C -0.091 4.091 20 Cl -0.050 7.050 21 C -0.098 4.098 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.915 -15.421 2.850 18.553 hybrid contribution 0.458 1.008 0.092 1.111 sum 10.373 -14.413 2.942 17.999 Atomic orbital electron populations 1.69954 1.06033 1.26896 1.50330 1.25002 0.94875 0.99260 0.95076 0.86538 0.79826 0.83118 0.78261 1.20521 1.21148 1.19800 1.21067 0.93089 0.89841 1.51258 0.92412 1.18326 0.92328 0.89222 0.98636 1.20604 0.97776 0.96275 0.90950 1.21016 0.95662 0.94357 0.98857 1.21090 1.03476 1.01175 0.95910 1.18467 0.92615 0.90257 0.92578 1.86183 1.58266 1.45422 1.31185 1.24117 0.96394 0.94240 0.85413 1.23508 0.97551 0.97140 1.01260 1.22650 1.00018 0.96593 0.98526 1.23169 0.98601 0.94993 1.00062 1.20172 1.03492 1.00894 0.84515 1.98312 1.88680 1.85909 1.32128 1.20907 0.95422 0.93628 0.99804 0.92786 0.95108 0.95062 0.85475 0.85542 0.88356 0.89000 0.90899 0.89836 0.90580 0.90716 0.88938 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.11 9.09 -34.44 -0.31 -14.43 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.05 1.29 5.10 -29.04 -0.15 1.14 16 10 C -0.06 -1.17 5.07 -104.60 -0.53 -1.70 16 11 C -0.08 -1.50 9.69 -39.60 -0.38 -1.88 16 12 C -0.20 -3.21 9.01 -39.44 -0.36 -3.57 16 13 C 0.11 1.81 6.67 -39.19 -0.26 1.54 16 14 O -0.30 -4.52 9.61 -19.51 -0.19 -4.71 16 15 C 0.05 0.63 3.63 -25.92 -0.09 0.54 16 16 C -0.16 -1.56 7.91 -25.92 -0.21 -1.77 16 17 C -0.14 -1.09 8.08 -25.92 -0.21 -1.30 16 18 C -0.13 -1.20 7.91 -25.92 -0.21 -1.40 16 19 C -0.06 -1.16 6.33 -39.36 -0.25 -1.41 16 20 Cl -0.08 -1.30 28.50 -51.86 -1.48 -2.78 16 21 C -0.08 -1.56 9.48 -39.57 -0.38 -1.93 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 24 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 25 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 26 H 0.13 1.67 5.96 -52.49 -0.31 1.36 16 27 H 0.10 1.05 6.05 -51.93 -0.31 0.74 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.14 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -29.18 304.89 -9.17 -38.35 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.39 Total: -1.90 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -3.43 Total: -24.62 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.74 Total: -25.21 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.19 Total: -4.71 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.48 Total: -2.78 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.18 -9.17 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.613 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds