Wall clock time and date at job start Mon Mar 30 2020 06:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00135 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99816 * 3 2 1 5 5 H 1.48496 * 109.47231 * 30.00066 * 3 2 1 6 6 H 1.48500 * 109.47288 * 149.99987 * 3 2 1 7 7 C 1.37881 * 119.99623 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.46938 * 179.97438 * 9 7 2 11 11 C 1.38274 * 119.94070 * 89.99978 * 10 9 7 12 12 C 1.38154 * 120.08085 * 180.02562 * 11 10 9 13 13 C 1.38709 * 119.95007 * 359.97438 * 12 11 10 14 14 O 1.35926 * 120.05683 * 180.02562 * 13 12 11 15 15 C 1.42904 * 116.99872 * 6.05239 * 14 13 12 16 16 C 1.53779 * 113.61823 * 255.33828 * 15 14 13 17 17 C 1.53775 * 87.08433 * 220.01949 * 16 15 14 18 18 C 1.53781 * 87.08220 * 25.43191 * 17 16 15 19 19 C 1.38813 * 119.88502 * 0.27654 * 13 12 11 20 20 Cl 1.73603 * 120.03775 * 179.70489 * 19 13 12 21 21 C 1.38250 * 119.93939 * 270.02068 * 10 9 7 22 22 H 0.96997 * 119.99452 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47504 * 60.00432 * 9 7 2 24 24 H 1.09002 * 109.47624 * 299.99580 * 9 7 2 25 25 H 1.08006 * 119.96459 * 359.97438 * 11 10 9 26 26 H 1.08001 * 120.02513 * 179.97438 * 12 11 10 27 27 H 1.09002 * 112.84784 * 26.65075 * 15 14 13 28 28 H 1.09004 * 113.61286 * 334.57419 * 16 15 14 29 29 H 1.09001 * 113.60986 * 105.46705 * 16 15 14 30 30 H 1.08997 * 113.61483 * 270.88518 * 17 16 15 31 31 H 1.09003 * 113.61701 * 139.98050 * 17 16 15 32 32 H 1.09000 * 113.61977 * 220.01879 * 18 17 16 33 33 H 1.09004 * 113.68656 * 89.12509 * 18 17 16 34 34 H 1.08002 * 119.97836 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6787 -4.1692 1.1987 12 6 3.5768 -5.2190 1.2021 13 6 4.0287 -5.7476 0.0019 14 8 4.9119 -6.7808 0.0027 15 6 5.2310 -7.3605 1.2693 16 6 6.6183 -6.9602 1.7983 17 6 6.7695 -8.4143 2.2750 18 6 5.7701 -8.7975 1.1708 19 6 3.5814 -5.2162 -1.1999 20 17 4.1502 -5.8697 -2.7043 21 6 2.6789 -4.1688 -1.1975 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.3271 -3.7573 2.1332 26 1 3.9268 -5.6277 2.1385 27 1 4.4323 -7.2431 2.0018 28 1 7.3216 -6.6826 1.0131 29 1 6.5829 -6.2354 2.6117 30 1 6.3925 -8.5846 3.2834 31 1 7.7683 -8.8228 2.1209 32 1 5.0499 -9.5560 1.4776 33 1 6.2402 -9.0227 0.2136 34 1 2.3277 -3.7568 -2.1320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260256716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:59 Heat of formation + Delta-G solvation = -25.924005 kcal Electronic energy + Delta-G solvation = -17292.519773 eV Core-core repulsion = 14409.160830 eV Total energy + Delta-G solvation = -2883.358942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.39438 -39.61645 -37.45394 -37.30843 -35.17835 -32.44354 -31.76595 -28.66453 -26.60980 -26.41100 -24.94907 -23.64042 -22.08456 -20.45387 -19.45794 -18.49571 -17.34317 -16.94210 -16.52417 -16.25584 -15.94286 -15.51076 -14.94769 -14.80022 -14.51739 -13.93080 -13.55867 -13.39177 -13.37455 -13.13926 -12.62645 -12.60249 -12.48036 -12.28184 -12.14205 -12.04764 -11.86102 -11.48538 -11.41652 -11.30591 -11.04795 -10.59484 -9.80736 -8.95219 -8.18326 -6.32131 0.22234 0.43627 1.20505 1.41253 1.41864 1.53028 2.23449 2.39755 2.73959 3.12064 3.57408 3.61977 3.79867 3.88512 3.93196 4.01445 4.23047 4.42841 4.49247 4.59203 4.75695 4.80742 4.82027 5.01678 5.05988 5.09397 5.18699 5.25576 5.34123 5.35026 5.41308 5.74487 5.75465 5.93434 6.18081 6.44604 6.80253 7.36548 8.89829 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.004620 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.213812 B = 6059.620085 C = 6605.976289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.061 3.939 10 C -0.084 4.084 11 C -0.082 4.082 12 C -0.185 4.185 13 C 0.117 3.883 14 O -0.305 6.305 15 C 0.034 3.966 16 C -0.160 4.160 17 C -0.126 4.126 18 C -0.128 4.128 19 C -0.076 4.076 20 Cl -0.066 7.066 21 C -0.086 4.086 22 H 0.266 0.734 23 H 0.005 0.995 24 H 0.012 0.988 25 H 0.135 0.865 26 H 0.163 0.837 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.914 -16.509 4.361 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.085 4.085 11 C -0.100 4.100 12 C -0.203 4.203 13 C 0.071 3.929 14 O -0.219 6.219 15 C -0.022 4.022 16 C -0.197 4.197 17 C -0.163 4.163 18 C -0.166 4.166 19 C -0.103 4.103 20 Cl -0.037 7.037 21 C -0.105 4.105 22 H 0.074 0.926 23 H 0.023 0.977 24 H 0.031 0.969 25 H 0.153 0.847 26 H 0.181 0.819 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.927 -16.563 4.070 20.812 hybrid contribution -0.100 1.209 -0.289 1.247 sum 11.826 -15.354 3.781 19.746 Atomic orbital electron populations 1.70069 1.07570 1.27930 1.51253 1.25863 0.95707 1.02898 0.94601 0.85494 0.78694 0.78713 0.78474 1.19958 1.20442 1.19009 1.21388 0.93097 0.91244 1.50996 0.92763 1.18052 0.92629 0.90509 0.96385 1.20268 0.98900 0.96578 0.92753 1.21102 0.95922 0.94876 0.98086 1.21347 1.01965 0.99806 0.97223 1.18578 0.91915 0.90142 0.92256 1.86207 1.57332 1.44569 1.33793 1.24655 0.97481 0.95746 0.84270 1.23525 0.96187 0.98892 1.01142 1.22645 1.00369 0.94486 0.98812 1.23200 0.99111 0.93774 1.00476 1.20197 1.03509 1.00800 0.85797 1.98308 1.88424 1.85583 1.31409 1.20789 0.96182 0.94432 0.99081 0.92560 0.97681 0.96947 0.84745 0.81929 0.87232 0.90062 0.90309 0.88115 0.89413 0.89379 0.89541 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.53 -29.76 9.09 25.60 0.23 -29.53 16 8 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.06 3.20 5.10 29.10 0.15 3.35 16 10 C -0.08 -3.65 5.07 -19.85 -0.10 -3.75 16 11 C -0.08 -2.99 9.69 22.26 0.22 -2.77 16 12 C -0.18 -5.61 9.01 22.36 0.20 -5.41 16 13 C 0.12 3.80 6.67 22.52 0.15 3.95 16 14 O -0.30 -8.64 9.61 -92.72 -0.89 -9.53 16 15 C 0.03 0.68 3.63 31.12 0.11 0.79 16 16 C -0.16 -2.72 7.91 31.12 0.25 -2.47 16 17 C -0.13 -1.50 8.08 31.12 0.25 -1.25 16 18 C -0.13 -1.95 7.91 31.12 0.25 -1.71 16 19 C -0.08 -2.73 6.33 22.41 0.14 -2.59 16 20 Cl -0.07 -2.13 28.50 -2.72 -0.08 -2.21 16 21 C -0.09 -3.47 9.48 22.28 0.21 -3.26 16 22 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 23 H 0.00 0.27 8.08 -2.39 -0.02 0.25 16 24 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 25 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 26 H 0.16 3.69 5.96 -2.91 -0.02 3.67 16 27 H 0.11 1.94 6.05 -2.39 -0.01 1.92 16 28 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -63.24 304.89 4.96 -58.29 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.09 Total: 6.16 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 2.52 Total: -43.75 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.28 Total: -54.88 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.89 Total: -9.53 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.21 kcal Total: -63.24 4.96 -58.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.364 kcal (2) G-P(sol) polarization free energy of solvation -63.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds