Wall clock time and date at job start Mon Mar 30 2020 06:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48502 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47263 * 300.00250 * 3 2 1 6 6 H 1.48506 * 109.46630 * 60.00351 * 3 2 1 7 7 C 1.37882 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00060 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99477 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46347 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46560 * 179.97438 * 10 9 7 12 12 C 1.47049 * 125.41039 * 270.02352 * 11 10 9 13 13 C 1.54107 * 103.85925 * 179.75665 * 12 11 10 14 14 N 1.47053 * 103.86328 * 0.37398 * 13 12 11 15 15 C 1.39803 * 125.40945 * 179.86647 * 14 13 12 16 16 C 1.34064 * 125.23856 * 179.43892 * 15 14 13 17 17 C 1.38509 * 114.74788 * 180.26794 * 16 15 14 18 18 C 1.33281 * 114.98410 * 0.02562 * 17 16 15 19 19 S 1.75859 * 109.72598 * 359.97438 * 18 17 16 20 20 C 1.33940 * 109.18088 * 359.60942 * 14 13 12 21 21 O 1.21595 * 123.04624 * 180.28395 * 20 14 13 22 22 H 0.96999 * 119.99962 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46978 * 60.00530 * 9 7 2 24 24 H 1.08993 * 109.47231 * 299.99663 * 9 7 2 25 25 H 1.08998 * 109.47024 * 60.00711 * 10 9 7 26 26 H 1.09000 * 109.47213 * 299.99401 * 10 9 7 27 27 H 1.08989 * 110.55166 * 298.59491 * 12 11 10 28 28 H 1.09004 * 110.54811 * 61.26700 * 12 11 10 29 29 H 1.09007 * 110.66240 * 241.72751 * 13 12 11 30 30 H 1.09003 * 110.43733 * 118.91768 * 13 12 11 31 31 H 1.07999 * 122.62519 * 0.26414 * 16 15 14 32 32 H 1.08002 * 122.50613 * 180.02562 * 17 16 15 33 33 H 1.07993 * 125.13663 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 7 1.5128 -4.9308 -0.0033 12 6 1.0868 -5.6692 1.1949 13 6 0.3646 -6.9070 0.6283 14 7 0.4685 -6.7393 -0.8289 15 6 -0.0418 -7.6231 -1.7844 16 6 0.0457 -7.4614 -3.1124 17 6 -0.5417 -8.4693 -3.8592 18 6 -1.1039 -9.4443 -3.1452 19 16 -0.9044 -9.1142 -1.4294 20 6 1.1248 -5.6026 -1.0953 21 8 1.3479 -5.2151 -2.2261 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.8719 -3.6051 0.8873 26 1 2.8720 -3.6035 -0.8927 27 1 1.9510 -5.9647 1.7897 28 1 0.4008 -5.0675 1.7913 29 1 -0.6803 -6.9183 0.9386 30 1 0.8687 -7.8201 0.9453 31 1 0.5357 -6.6118 -3.5645 32 1 -0.5441 -8.4654 -4.9392 33 1 -1.6053 -10.3071 -3.5580 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260260102.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:16 Heat of formation + Delta-G solvation = 25.194062 kcal Electronic energy + Delta-G solvation = -17571.329045 eV Core-core repulsion = 14724.523206 eV Total energy + Delta-G solvation = -2846.805839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.12569 -37.64223 -36.17684 -35.03747 -33.02652 -30.74491 -28.72259 -27.96875 -25.28609 -23.93152 -22.98586 -21.64344 -20.28025 -18.60308 -18.12307 -16.83841 -16.33326 -15.86044 -15.63449 -14.98700 -14.50979 -14.12353 -13.78630 -13.78197 -13.41621 -12.75758 -12.54221 -12.48564 -12.37492 -12.15790 -12.00076 -11.34262 -11.00083 -10.97508 -10.69699 -10.24317 -10.03901 -9.91802 -9.68051 -9.21821 -8.50312 -8.39852 -8.29647 -7.65383 -6.04463 -4.08338 1.05878 1.21130 1.87692 2.53888 2.81516 3.29804 3.37329 3.41014 3.48826 3.82951 4.33883 4.44167 4.83297 4.96904 5.12809 5.28663 5.32151 5.41030 5.59004 5.69963 5.78534 6.02932 6.16867 6.38232 6.49048 6.56337 6.73920 6.87483 7.00086 7.55810 7.65835 7.84513 7.95202 8.30549 8.74233 8.98679 9.56064 11.07019 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.037712 B = 0.004118 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.296929 B = 6797.434571 C = 7122.340512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.009 3.991 10 C 0.151 3.849 11 N -0.617 5.617 12 C 0.094 3.906 13 C 0.086 3.914 14 N -0.553 5.553 15 C 0.107 3.893 16 C -0.198 4.198 17 C -0.094 4.094 18 C -0.244 4.244 19 S 0.093 5.907 20 C 0.698 3.302 21 O -0.559 6.559 22 H 0.261 0.739 23 H 0.022 0.978 24 H 0.017 0.983 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.142 0.858 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 -19.645 1.198 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.029 4.029 10 C 0.032 3.968 11 N -0.353 5.353 12 C -0.030 4.030 13 C -0.037 4.037 14 N -0.281 5.281 15 C -0.105 4.105 16 C -0.231 4.231 17 C -0.125 4.125 18 C -0.380 4.380 19 S 0.350 5.650 20 C 0.399 3.601 21 O -0.434 6.434 22 H 0.071 0.929 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.181 0.819 32 H 0.160 0.840 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.781 -19.913 1.902 20.083 hybrid contribution 0.634 1.628 -1.088 2.059 sum -1.147 -18.285 0.813 18.339 Atomic orbital electron populations 1.69984 1.06145 1.26650 1.50309 1.25004 0.94844 0.99361 0.95038 0.86484 0.80083 0.83517 0.77607 1.19617 1.20924 1.20991 1.21098 0.93096 0.90541 1.51395 0.92312 1.19460 0.94535 0.91032 0.97900 1.21792 0.94449 0.78823 1.01776 1.47599 1.59208 1.24230 1.04298 1.22351 0.99626 0.91199 0.89871 1.22654 1.02584 0.99734 0.78759 1.43984 1.56653 1.21782 1.05681 1.21611 1.02886 0.94829 0.91178 1.20478 1.07730 1.03729 0.91132 1.19972 0.98206 0.93221 1.01094 1.25235 1.12465 1.05957 0.94318 1.83998 1.56564 1.16378 1.08077 1.15793 0.79081 0.79657 0.85605 1.90878 1.61203 1.70452 1.20907 0.92947 0.95916 0.96419 0.91073 0.90650 0.89709 0.89240 0.89252 0.89414 0.81948 0.84032 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.23 5.30 -27.88 -0.15 0.08 16 10 C 0.15 3.15 5.94 -4.04 -0.02 3.12 16 11 N -0.62 -11.34 2.96 -178.81 -0.53 -11.87 16 12 C 0.09 1.19 7.68 -3.16 -0.02 1.17 16 13 C 0.09 0.98 7.27 -3.16 -0.02 0.96 16 14 N -0.55 -8.89 3.15 -119.33 -0.38 -9.26 16 15 C 0.11 1.64 7.19 -15.38 -0.11 1.53 16 16 C -0.20 -3.13 9.49 -40.95 -0.39 -3.52 16 17 C -0.09 -1.16 10.17 -41.21 -0.42 -1.58 16 18 C -0.24 -2.59 11.21 29.00 0.33 -2.27 16 19 S 0.09 1.04 22.94 -107.50 -2.47 -1.43 16 20 C 0.70 13.91 8.24 -88.40 -0.73 13.18 16 21 O -0.56 -13.20 14.82 5.28 0.08 -13.12 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.08 1.66 7.92 -51.93 -0.41 1.25 16 27 H 0.08 0.85 8.14 -51.94 -0.42 0.43 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.16 3.00 6.05 -52.49 -0.32 2.68 16 32 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 298.20 15.07 4.49 4.49 Total: -1.00 -34.10 298.20 -9.11 -43.21 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.07 Total: -1.62 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.95 Total: -0.72 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.17 Total: -47.38 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.47 Total: -1.43 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.10 -9.11 -43.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260260102.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.403 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds