Wall clock time and date at job start Mon Mar 30 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38130 * 119.83039 * 2 1 4 4 C 1.50694 * 120.00879 * 359.95449 * 3 2 1 5 5 C 1.50698 * 109.47247 * 84.99907 * 4 3 2 6 6 H 1.08002 * 119.99869 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00096 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00251 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00144 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47309 * 59.99997 * 9 7 5 11 11 H 1.48506 * 109.47367 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47110 * 299.99939 * 9 7 5 13 13 C 1.38255 * 119.98852 * 179.70966 * 3 2 1 14 14 C 1.38105 * 119.94219 * 0.58277 * 13 3 2 15 15 Cl 1.73599 * 119.90094 * 179.75564 * 14 13 3 16 16 C 1.39203 * 120.19295 * 359.77959 * 14 13 3 17 17 C 1.38364 * 119.69471 * 359.84000 * 16 14 13 18 18 C 1.50764 * 121.40499 * 180.33442 * 17 16 14 19 19 C 1.53064 * 109.68659 * 342.19626 * 18 17 16 20 20 C 1.53409 * 108.30510 * 48.19351 * 19 18 17 21 21 O 1.35867 * 118.49908 * 179.69918 * 16 14 13 22 22 H 1.08999 * 109.47015 * 269.72872 * 1 2 3 23 23 H 1.09000 * 109.46646 * 29.72024 * 1 2 3 24 24 H 1.09000 * 109.47248 * 149.72742 * 1 2 3 25 25 H 1.08997 * 109.47459 * 205.00230 * 4 3 2 26 26 H 1.09005 * 109.46546 * 324.99893 * 4 3 2 27 27 H 0.96998 * 120.00297 * 180.02562 * 8 7 5 28 28 H 1.07999 * 120.02869 * 180.35818 * 13 3 2 29 29 H 1.09001 * 109.43699 * 102.26101 * 18 17 16 30 30 H 1.09002 * 109.43752 * 222.12658 * 18 17 16 31 31 H 1.09000 * 109.70397 * 167.89718 * 19 18 17 32 32 H 1.09004 * 109.69819 * 288.45143 * 19 18 17 33 33 H 1.08998 * 109.68361 * 55.00653 * 20 19 18 34 34 H 1.09002 * 109.68607 * 175.56795 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.1983 0.0000 4 6 1.4370 2.5012 -0.0010 5 6 1.0766 2.8739 1.4139 6 1 1.3671 2.2317 2.2322 7 6 0.3759 4.0347 1.6639 8 7 0.0225 4.8171 0.6676 9 14 -0.0703 4.4970 3.4179 10 1 1.1698 4.6465 4.2212 11 1 -0.8165 5.7810 3.4169 12 1 -0.9183 3.4315 4.0102 13 6 3.5767 1.2021 0.0061 14 6 4.2694 0.0073 0.0000 15 17 6.0053 0.0134 0.0012 16 6 3.5796 -1.2018 -0.0077 17 6 2.1959 -1.2015 -0.0058 18 6 1.4101 -2.4882 -0.0063 19 6 2.3118 -3.6429 -0.4497 20 6 3.6224 -3.5627 0.3436 21 8 4.2954 -2.3565 -0.0198 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3632 0.8925 -0.5095 24 1 -0.3634 -0.8875 -0.5181 25 1 2.0600 3.2831 -0.4352 26 1 0.5270 2.3921 -0.5911 27 1 -0.4701 5.6339 0.8435 28 1 4.1146 2.1386 0.0119 29 1 1.0362 -2.6852 0.9984 30 1 0.5695 -2.3995 -0.6945 31 1 1.8177 -4.5933 -0.2478 32 1 2.5211 -3.5570 -1.5160 33 1 3.4052 -3.5546 1.4116 34 1 4.2505 -4.4204 0.1026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260278674.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:37 Heat of formation + Delta-G solvation = -43.165861 kcal Electronic energy + Delta-G solvation = -18002.847117 eV Core-core repulsion = 15118.740512 eV Total energy + Delta-G solvation = -2884.106605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46059 -37.73412 -36.14582 -34.18012 -33.27102 -31.42674 -30.96974 -27.66236 -26.08702 -25.40381 -23.80879 -22.16121 -20.60250 -19.22073 -17.24070 -16.63261 -16.38671 -15.60581 -14.86127 -14.44256 -14.19101 -13.89238 -13.49384 -13.44211 -13.18451 -12.55519 -12.33718 -12.14399 -11.97905 -11.62771 -11.40990 -11.05980 -10.95073 -10.83835 -10.70351 -10.49308 -10.38346 -10.29452 -10.08021 -9.54226 -9.34648 -8.43950 -8.05205 -7.40030 -6.06731 -4.10746 1.66246 1.88985 2.64026 3.29766 3.34509 3.37416 3.48859 4.12171 4.43609 4.69904 4.76388 4.86287 5.18146 5.25711 5.28969 5.43160 5.53131 5.61452 5.61898 5.82917 5.97100 6.04647 6.10322 6.19039 6.20254 6.30996 6.62307 6.74903 6.85192 7.08599 7.24843 7.52214 7.71351 7.75493 7.88749 8.28076 8.93701 9.53155 11.02658 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.006122 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.324362 B = 4572.801637 C = 5339.245240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.048 4.048 3 C -0.053 4.053 4 C 0.053 3.947 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.083 4.083 14 C -0.066 4.066 15 Cl -0.080 7.080 16 C 0.113 3.887 17 C -0.155 4.155 18 C -0.073 4.073 19 C -0.159 4.159 20 C 0.062 3.938 21 O -0.311 6.311 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.134 0.866 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -14.937 -2.129 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.049 4.049 3 C -0.054 4.054 4 C 0.016 3.984 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C -0.101 4.101 14 C -0.093 4.093 15 Cl -0.051 7.051 16 C 0.068 3.932 17 C -0.156 4.156 18 C -0.110 4.110 19 C -0.197 4.197 20 C -0.013 4.013 21 O -0.225 6.225 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.152 0.848 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.245 -14.797 -2.217 15.553 hybrid contribution -0.237 0.289 1.092 1.154 sum 4.009 -14.508 -1.126 15.094 Atomic orbital electron populations 1.20853 0.90873 1.02330 1.02748 1.19616 0.96456 0.91074 0.97728 1.20410 0.92421 0.97258 0.95298 1.18345 0.94875 0.87307 0.97869 1.20973 1.35528 1.06508 0.91804 0.92608 1.24976 0.95810 0.96264 0.97062 1.69936 1.39089 1.13370 1.30845 0.86638 0.78661 0.77721 0.84919 1.20171 1.21227 1.20212 1.20845 0.94140 0.95617 0.99538 1.20282 0.83784 0.92608 1.12668 1.98306 1.10549 1.98925 1.97341 1.18062 0.89279 0.84693 1.01176 1.19456 0.91328 0.95801 1.09004 1.20451 0.97549 0.90747 1.02252 1.22243 0.96718 0.99402 1.01299 1.22886 0.94067 0.85685 0.98690 1.86026 1.38379 1.13698 1.84399 0.90778 0.89966 0.92777 0.95364 0.94554 0.92757 0.84770 0.90670 0.89775 0.90173 0.90594 0.92137 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 9.15 36.01 0.33 -1.59 16 2 C -0.05 -0.92 5.88 -104.56 -0.62 -1.53 16 3 C -0.05 -1.14 5.07 -104.66 -0.53 -1.67 16 4 C 0.05 1.30 4.59 -29.04 -0.13 1.17 16 5 C -0.51 -13.74 9.09 -34.44 -0.31 -14.05 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 C -0.08 -1.66 9.45 -39.62 -0.37 -2.04 16 14 C -0.07 -1.24 6.34 -39.27 -0.25 -1.49 16 15 Cl -0.08 -1.35 28.40 -51.86 -1.47 -2.82 16 16 C 0.11 1.99 6.47 -39.18 -0.25 1.74 16 17 C -0.15 -2.61 5.75 -104.45 -0.60 -3.21 16 18 C -0.07 -0.93 5.16 -27.82 -0.14 -1.07 16 19 C -0.16 -1.66 6.19 -26.49 -0.16 -1.82 16 20 C 0.06 0.71 7.03 37.37 0.26 0.97 16 21 O -0.31 -4.90 9.65 -19.32 -0.19 -5.08 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 23 H 0.08 1.54 5.99 -51.93 -0.31 1.23 16 24 H 0.05 0.75 6.04 -51.93 -0.31 0.43 16 25 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 26 H 0.04 0.92 6.15 -51.93 -0.32 0.61 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.98 6.39 -51.93 -0.33 0.65 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -29.15 293.42 -8.60 -37.75 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.19 Total: -2.43 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.88 Total: -23.03 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.74 Total: -24.91 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.19 Total: -5.08 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.47 Total: -2.82 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.15 -8.60 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278674.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.418 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds