Wall clock time and date at job start Mon Mar 30 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38130 * 119.83039 * 2 1 4 4 C 1.50694 * 120.00879 * 359.95449 * 3 2 1 5 5 C 1.50698 * 109.47247 * 84.99907 * 4 3 2 6 6 H 1.08002 * 119.99869 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00096 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00251 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00144 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47309 * 59.99997 * 9 7 5 11 11 H 1.48506 * 109.47367 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47110 * 299.99939 * 9 7 5 13 13 C 1.38255 * 119.98852 * 179.70966 * 3 2 1 14 14 C 1.38105 * 119.94219 * 0.58277 * 13 3 2 15 15 Cl 1.73599 * 119.90094 * 179.75564 * 14 13 3 16 16 C 1.39203 * 120.19295 * 359.77959 * 14 13 3 17 17 C 1.38364 * 119.69471 * 359.84000 * 16 14 13 18 18 C 1.50764 * 121.40499 * 180.33442 * 17 16 14 19 19 C 1.53064 * 109.68659 * 342.19626 * 18 17 16 20 20 C 1.53409 * 108.30510 * 48.19351 * 19 18 17 21 21 O 1.35867 * 118.49908 * 179.69918 * 16 14 13 22 22 H 1.08999 * 109.47015 * 269.72872 * 1 2 3 23 23 H 1.09000 * 109.46646 * 29.72024 * 1 2 3 24 24 H 1.09000 * 109.47248 * 149.72742 * 1 2 3 25 25 H 1.08997 * 109.47459 * 205.00230 * 4 3 2 26 26 H 1.09005 * 109.46546 * 324.99893 * 4 3 2 27 27 H 0.96998 * 120.00297 * 180.02562 * 8 7 5 28 28 H 1.07999 * 120.02869 * 180.35818 * 13 3 2 29 29 H 1.09001 * 109.43699 * 102.26101 * 18 17 16 30 30 H 1.09002 * 109.43752 * 222.12658 * 18 17 16 31 31 H 1.09000 * 109.70397 * 167.89718 * 19 18 17 32 32 H 1.09004 * 109.69819 * 288.45143 * 19 18 17 33 33 H 1.08998 * 109.68361 * 55.00653 * 20 19 18 34 34 H 1.09002 * 109.68607 * 175.56795 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.1983 0.0000 4 6 1.4370 2.5012 -0.0010 5 6 1.0766 2.8739 1.4139 6 1 1.3671 2.2317 2.2322 7 6 0.3759 4.0347 1.6639 8 7 0.0225 4.8171 0.6676 9 14 -0.0703 4.4970 3.4179 10 1 1.1698 4.6465 4.2212 11 1 -0.8165 5.7810 3.4169 12 1 -0.9183 3.4315 4.0102 13 6 3.5767 1.2021 0.0061 14 6 4.2694 0.0073 0.0000 15 17 6.0053 0.0134 0.0012 16 6 3.5796 -1.2018 -0.0077 17 6 2.1959 -1.2015 -0.0058 18 6 1.4101 -2.4882 -0.0063 19 6 2.3118 -3.6429 -0.4497 20 6 3.6224 -3.5627 0.3436 21 8 4.2954 -2.3565 -0.0198 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3632 0.8925 -0.5095 24 1 -0.3634 -0.8875 -0.5181 25 1 2.0600 3.2831 -0.4352 26 1 0.5270 2.3921 -0.5911 27 1 -0.4701 5.6339 0.8435 28 1 4.1146 2.1386 0.0119 29 1 1.0362 -2.6852 0.9984 30 1 0.5695 -2.3995 -0.6945 31 1 1.8177 -4.5933 -0.2478 32 1 2.5211 -3.5570 -1.5160 33 1 3.4052 -3.5546 1.4116 34 1 4.2505 -4.4204 0.1026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260278674.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:36 Heat of formation + Delta-G solvation = -58.182933 kcal Electronic energy + Delta-G solvation = -18003.498307 eV Core-core repulsion = 15118.740512 eV Total energy + Delta-G solvation = -2884.757794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72992 -39.09059 -37.53051 -35.46863 -35.07689 -32.99509 -32.32836 -29.32597 -27.52898 -26.61255 -25.42706 -23.61516 -22.01066 -20.45279 -18.50861 -18.48036 -17.91432 -16.96389 -16.41987 -16.00041 -15.32568 -15.12330 -14.85522 -14.71233 -14.49913 -14.18308 -13.88403 -13.66005 -13.35520 -13.23671 -12.85248 -12.61753 -12.53312 -12.31869 -12.00310 -11.97132 -11.85454 -11.71665 -11.34878 -11.27388 -11.12595 -10.55900 -9.44848 -8.89357 -8.15995 -6.28983 0.21055 0.43247 1.22332 1.40814 1.42647 1.50634 2.32145 2.41180 2.70239 3.14103 3.68357 3.81203 3.87517 4.02009 4.17887 4.30398 4.35672 4.47917 4.60619 4.62454 4.75283 4.84487 4.87031 4.99854 5.06688 5.15435 5.21316 5.23074 5.32665 5.42609 5.50702 5.76591 5.83636 5.99276 6.20835 6.46023 6.82054 7.38805 8.91781 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.006122 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.324362 B = 4572.801637 C = 5339.245240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.084 4.084 4 C 0.064 3.936 5 C -0.520 4.520 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.266 1.266 13 C -0.095 4.095 14 C -0.079 4.079 15 Cl -0.067 7.067 16 C 0.119 3.881 17 C -0.150 4.150 18 C -0.076 4.076 19 C -0.151 4.151 20 C 0.049 3.951 21 O -0.321 6.321 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.092 0.908 25 H -0.002 1.002 26 H 0.021 0.979 27 H 0.265 0.735 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 -17.927 -1.265 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.056 4.056 3 C -0.085 4.085 4 C 0.028 3.972 5 C -0.558 4.558 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.568 5.568 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.190 1.190 13 C -0.114 4.114 14 C -0.106 4.106 15 Cl -0.038 7.038 16 C 0.073 3.927 17 C -0.151 4.151 18 C -0.113 4.113 19 C -0.188 4.188 20 C -0.025 4.025 21 O -0.236 6.236 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.110 0.890 25 H 0.016 0.984 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.987 -17.810 -1.353 18.301 hybrid contribution -0.069 1.095 0.785 1.349 sum 3.918 -16.714 -0.568 17.177 Atomic orbital electron populations 1.20820 0.89814 1.02928 1.02676 1.19818 0.97355 0.91023 0.97433 1.20150 0.92921 0.96687 0.98702 1.18055 0.94065 0.88608 0.96513 1.21236 1.35265 1.06568 0.92687 0.93095 1.25799 0.95729 0.96199 1.01114 1.70056 1.39927 1.13848 1.32981 0.85622 0.78497 0.77720 0.79972 1.19856 1.20685 1.19045 1.20744 0.93882 0.96175 1.00602 1.20340 0.84631 0.92732 1.12931 1.98299 1.09295 1.98914 1.97295 1.18182 0.89675 0.85222 0.99585 1.19868 0.91360 0.96944 1.06943 1.20624 0.97835 0.89194 1.03618 1.22242 0.95799 1.00063 1.00739 1.23342 0.95250 0.84507 0.99413 1.86023 1.39229 1.14245 1.84105 0.91101 0.92496 0.88970 0.98384 0.96067 0.92638 0.85687 0.89239 0.88369 0.86450 0.90947 0.91453 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.58 9.15 71.24 0.65 -2.93 16 2 C -0.06 -2.11 5.88 -19.83 -0.12 -2.23 16 3 C -0.08 -3.73 5.07 -19.89 -0.10 -3.83 16 4 C 0.06 3.36 4.59 29.10 0.13 3.50 16 5 C -0.52 -28.94 9.09 25.60 0.23 -28.71 16 6 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 9 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 13 C -0.10 -3.98 9.45 22.24 0.21 -3.77 16 14 C -0.08 -2.96 6.34 22.47 0.14 -2.82 16 15 Cl -0.07 -2.22 28.40 -2.72 -0.08 -2.30 16 16 C 0.12 4.03 6.47 22.53 0.15 4.18 16 17 C -0.15 -4.78 5.75 -19.75 -0.11 -4.89 16 18 C -0.08 -1.63 5.16 29.89 0.15 -1.47 16 19 C -0.15 -2.44 6.19 30.75 0.19 -2.25 16 20 C 0.05 0.91 7.03 72.12 0.51 1.42 16 21 O -0.32 -9.29 9.65 -92.06 -0.89 -10.17 16 22 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.06 2.20 5.99 -2.39 -0.01 2.18 16 24 H 0.09 2.32 6.04 -2.39 -0.01 2.31 16 25 H 0.00 -0.12 8.05 -2.39 -0.02 -0.14 16 26 H 0.02 1.15 6.15 -2.38 -0.01 1.14 16 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.13 5.24 8.06 -2.91 -0.02 5.22 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.10 1.86 6.39 -2.39 -0.02 1.84 16 31 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 34 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -64.74 293.42 4.96 -59.78 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.11 Total: 4.33 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 2.50 Total: -42.77 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.28 Total: -54.60 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.89 Total: -10.17 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.30 kcal Total: -64.74 4.96 -59.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278674.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.598 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds