Wall clock time and date at job start Mon Mar 30 2020 08:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 120.00282 * 2 1 4 4 H 1.48496 * 109.47263 * 240.00484 * 3 2 1 5 5 H 1.48499 * 109.46800 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47179 * 120.00242 * 3 2 1 7 7 C 1.39959 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00000 * 163.51060 * 7 2 1 9 9 C 1.41360 * 119.99932 * 343.50131 * 7 2 1 10 10 C 1.41062 * 121.05429 * 335.75493 * 9 7 2 11 11 N 1.31957 * 118.78796 * 179.75289 * 10 9 7 12 12 C 1.32019 * 121.12345 * 0.53542 * 11 10 9 13 13 C 1.50701 * 118.80071 * 179.71587 * 12 11 10 14 14 C 1.53001 * 109.47119 * 299.73201 * 13 12 11 15 15 C 1.52998 * 109.46821 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.47618 * 300.00317 * 15 14 13 17 17 C 1.53001 * 109.47283 * 59.99966 * 16 15 14 18 18 C 1.52996 * 109.47333 * 59.73525 * 13 12 11 19 19 N 1.31961 * 122.39215 * 359.44070 * 12 11 10 20 20 C 1.32099 * 121.05968 * 0.27528 * 19 12 11 21 21 Cl 1.73603 * 120.62827 * 179.97438 * 20 19 12 22 22 H 0.97006 * 119.99974 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.60451 * 0.02562 * 10 9 7 24 24 H 1.09004 * 109.46829 * 179.73426 * 13 12 11 25 25 H 1.09004 * 109.47087 * 60.00383 * 14 13 12 26 26 H 1.08998 * 109.47593 * 300.00072 * 14 13 12 27 27 H 1.09006 * 109.47341 * 60.00543 * 15 14 13 28 28 H 1.09001 * 109.46997 * 179.97438 * 15 14 13 29 29 H 1.09006 * 109.47328 * 179.97438 * 16 15 14 30 30 H 1.08994 * 109.47063 * 300.00032 * 16 15 14 31 31 H 1.09004 * 109.47087 * 59.99973 * 17 16 15 32 32 H 1.08998 * 109.47593 * 180.02562 * 17 16 15 33 33 H 1.09005 * 109.47189 * 59.99837 * 18 13 12 34 34 H 1.09006 * 109.46949 * 300.00275 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0080 -1.2121 -0.0005 8 1 3.0547 -1.2312 -0.2660 9 6 1.3448 -2.4112 0.3466 10 6 0.1909 -2.3960 1.1578 11 7 -0.3954 -3.5415 1.4502 12 6 0.0863 -4.6876 1.0061 13 6 -0.6215 -5.9652 1.3773 14 6 -0.6302 -6.1197 2.8995 15 6 -1.3494 -7.4165 3.2763 16 6 -2.7889 -7.3700 2.7601 17 6 -2.7801 -7.2156 1.2379 18 6 -2.0610 -5.9194 0.8610 19 7 1.1619 -4.7547 0.2446 20 6 1.8168 -3.6629 -0.1077 21 17 3.2310 -3.7642 -1.1094 22 1 -0.4850 0.8401 0.0004 23 1 -0.2079 -1.4636 1.5291 24 1 -0.1015 -6.8120 0.9292 25 1 -1.1502 -5.2729 3.3476 26 1 0.3953 -6.1524 3.2674 27 1 -0.8298 -8.2635 2.8282 28 1 -1.3552 -7.5267 4.3607 29 1 -3.3010 -8.2942 3.0282 30 1 -3.3084 -6.5231 3.2082 31 1 -2.2605 -8.0626 0.7897 32 1 -3.8056 -7.1820 0.8701 33 1 -2.0547 -5.8094 -0.2235 34 1 -2.5809 -5.0725 1.3091 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260287020.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:41 Heat of formation + Delta-G solvation = -9.716271 kcal Electronic energy + Delta-G solvation = -17823.616049 eV Core-core repulsion = 14973.252678 eV Total energy + Delta-G solvation = -2850.363371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.51106 -37.70269 -35.41965 -34.48046 -31.93306 -31.64156 -30.38086 -29.53117 -25.73611 -22.90197 -22.82591 -22.15958 -20.80075 -19.20809 -17.70481 -16.39369 -16.02479 -15.17454 -14.63908 -13.89911 -13.80480 -13.61475 -13.52212 -13.35833 -12.39366 -12.18425 -12.02122 -11.83621 -11.78212 -11.49021 -11.14050 -10.89654 -10.82359 -10.74857 -10.72878 -10.26804 -10.09957 -9.95394 -9.77629 -9.57447 -9.20017 -9.00164 -8.07689 -7.78631 -7.16488 -4.74715 2.33127 2.58415 2.90856 2.93309 3.00273 3.15518 3.68070 4.34722 4.98342 5.07350 5.08491 5.35141 5.47103 5.56645 5.68457 5.87563 5.87812 5.96397 5.99142 6.00516 6.15497 6.27709 6.35989 6.45837 6.46344 6.61061 6.62315 6.75326 6.78468 6.81524 6.99668 7.26417 7.56983 8.01509 8.08357 8.32123 8.65034 9.63055 9.76628 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.005574 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.084553 B = 5022.049405 C = 5717.897229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.418 4.418 8 H 0.095 0.905 9 C 0.028 3.972 10 C 0.089 3.911 11 N -0.492 5.492 12 C 0.176 3.824 13 C 0.011 3.989 14 C -0.105 4.105 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.105 4.105 19 N -0.489 5.489 20 C 0.087 3.913 21 Cl -0.073 7.073 22 H 0.292 0.708 23 H 0.166 0.834 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -4.971 3.152 6.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.149 4.149 3 Si 0.744 3.256 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.447 4.447 8 H 0.113 0.887 9 C 0.020 3.980 10 C -0.085 4.085 11 N -0.205 5.205 12 C -0.087 4.087 13 C -0.009 4.009 14 C -0.143 4.143 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.144 4.144 19 N -0.203 5.203 20 C -0.088 4.088 21 Cl -0.046 7.046 22 H 0.103 0.897 23 H 0.183 0.817 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.074 -5.738 3.276 7.288 hybrid contribution 1.011 1.603 -0.538 1.970 sum -2.063 -4.135 2.737 5.371 Atomic orbital electron populations 1.69713 1.07861 1.30777 1.31705 1.26105 0.94914 1.02130 0.91719 0.86117 0.80086 0.78822 0.80557 1.18431 1.19877 1.18296 1.19660 0.98283 0.90052 1.36709 0.88712 1.18929 0.94344 0.92385 0.92315 1.23415 0.94121 0.95066 0.95898 1.67538 1.31639 0.98815 1.22473 1.21653 0.93092 0.92944 1.00963 1.19423 0.94073 0.92345 0.95064 1.21503 0.99995 0.97336 0.95477 1.21539 0.95815 0.98228 0.99880 1.21523 0.96844 1.01053 0.96078 1.21534 0.99900 0.98267 0.95768 1.21499 0.95135 0.97389 1.00350 1.66707 1.08009 1.33155 1.12429 1.21669 0.94224 0.90162 1.02728 1.98250 1.39426 1.98506 1.68382 0.89684 0.81735 0.90734 0.91145 0.92711 0.92352 0.92500 0.92738 0.91991 0.92357 0.92479 0.92678 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.14 10.93 55.55 0.61 -17.53 16 2 C 0.07 1.64 5.20 -17.34 -0.09 1.55 16 3 Si 0.92 16.94 29.59 -169.99 -5.03 11.91 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.42 -10.20 8.62 -37.75 -0.33 -10.52 16 8 H 0.09 2.24 7.21 -52.49 -0.38 1.86 16 9 C 0.03 0.72 5.60 -106.49 -0.60 0.13 16 10 C 0.09 2.25 10.00 -16.43 -0.16 2.09 16 11 N -0.49 -11.91 9.74 -10.10 -0.10 -12.01 16 12 C 0.18 4.10 6.35 -156.86 -1.00 3.11 16 13 C 0.01 0.21 2.52 -91.77 -0.23 -0.02 16 14 C -0.10 -1.73 5.10 -26.73 -0.14 -1.87 16 15 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 16 C -0.12 -1.45 5.92 -26.73 -0.16 -1.60 16 17 C -0.12 -1.56 5.92 -26.76 -0.16 -1.72 16 18 C -0.11 -1.78 5.09 -26.76 -0.14 -1.92 16 19 N -0.49 -12.14 10.27 -7.23 -0.07 -12.22 16 20 C 0.09 2.18 7.41 -16.29 -0.12 2.06 16 21 Cl -0.07 -1.62 27.94 -51.86 -1.45 -3.07 16 22 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 23 H 0.17 4.11 6.22 -52.49 -0.33 3.78 16 24 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 25 H 0.07 1.24 8.01 -51.93 -0.42 0.82 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 LS Contribution 294.38 15.07 4.44 4.44 Total: -1.00 -25.90 294.38 -9.35 -35.25 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.47 Total: 3.63 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.27 Total: -10.40 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.43 Total: -41.76 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -1.45 Total: -3.07 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.90 -9.35 -35.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260287020.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.537 kcal (2) G-P(sol) polarization free energy of solvation -25.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds