Wall clock time and date at job start Mon Mar 30 2020 07:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76196 * 103.00356 * 2 1 4 4 C 1.38898 * 120.08475 * 359.72120 * 3 2 1 5 5 C 1.38124 * 119.94850 * 180.29707 * 4 3 2 6 6 C 1.50705 * 119.94380 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46993 * 359.97438 * 6 5 4 8 8 C 1.50703 * 109.46701 * 239.99869 * 6 5 4 9 9 H 1.07997 * 120.00376 * 294.83852 * 8 6 5 10 10 C 1.37877 * 119.99677 * 114.84139 * 8 6 5 11 11 N 1.31512 * 119.99983 * 184.75923 * 10 8 6 12 12 Si 1.86799 * 120.00085 * 4.75736 * 10 8 6 13 13 H 1.48494 * 109.47396 * 84.66696 * 12 10 8 14 14 H 1.48510 * 109.47072 * 204.66657 * 12 10 8 15 15 H 1.48499 * 109.47284 * 324.66187 * 12 10 8 16 16 C 1.52998 * 109.46958 * 120.00145 * 6 5 4 17 17 C 1.52996 * 117.49538 * 253.90488 * 16 6 5 18 18 C 1.53010 * 117.49417 * 185.24938 * 16 6 5 19 19 C 1.38290 * 120.11679 * 359.97438 * 5 4 3 20 20 C 1.38308 * 120.16768 * 0.02562 * 19 5 4 21 21 C 1.38258 * 120.05880 * 0.02562 * 20 19 5 22 22 F 1.35093 * 120.06079 * 179.97438 * 21 20 19 23 23 H 1.09006 * 109.47095 * 59.99825 * 1 2 3 24 24 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46949 * 300.00157 * 1 2 3 26 26 H 1.08007 * 120.02410 * 0.25716 * 4 3 2 27 27 H 0.97001 * 120.00484 * 179.97438 * 11 10 8 28 28 H 1.08995 * 115.55295 * 39.57599 * 16 6 5 29 29 H 1.09003 * 117.50061 * 0.02562 * 17 16 6 30 30 H 1.09003 * 117.50280 * 145.02579 * 17 16 6 31 31 H 1.08997 * 117.49247 * 214.97894 * 18 16 6 32 32 H 1.09001 * 117.49670 * 359.97258 * 18 16 6 33 33 H 1.08002 * 119.91822 * 179.97438 * 19 5 4 34 34 H 1.08001 * 119.96911 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1961 2.6656 -0.0058 5 6 1.5101 4.0107 -0.0120 6 6 0.4094 5.0401 -0.0190 7 1 -0.5579 4.5377 -0.0185 8 6 0.5299 5.8959 -1.2536 9 1 1.3899 6.5358 -1.3853 10 6 -0.4578 5.8620 -2.2149 11 7 -0.3093 6.5361 -3.3343 12 14 -2.0070 4.8587 -1.9273 13 1 -2.9811 5.6643 -1.1482 14 1 -2.6056 4.4867 -3.2346 15 1 -1.6659 3.6272 -1.1709 16 6 0.5276 5.9214 1.2261 17 6 -0.4920 5.7028 2.3456 18 6 -0.5753 6.9541 1.4678 19 6 2.8327 4.4145 -0.0119 20 6 3.8466 3.4738 -0.0061 21 6 3.5404 2.1255 -0.0009 22 9 4.5307 1.2067 0.0042 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.1626 2.3519 -0.0062 27 1 -1.0041 6.5120 -4.0109 28 1 1.5429 6.1922 1.5158 29 1 -1.2467 4.9308 2.1954 30 1 -0.1476 5.8301 3.3720 31 1 -0.2855 7.9040 1.9169 32 1 -1.3847 7.0058 0.7396 33 1 3.0746 5.4670 -0.0172 34 1 4.8785 3.7927 -0.0056 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260298996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:35 Heat of formation + Delta-G solvation = -17.195740 kcal Electronic energy + Delta-G solvation = -17878.944895 eV Core-core repulsion = 15010.380934 eV Total energy + Delta-G solvation = -2868.563961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.86847 -40.33673 -38.07408 -34.83130 -32.87989 -32.43805 -29.84432 -29.00508 -25.29707 -24.32812 -23.01656 -22.84736 -20.83909 -19.09338 -18.87976 -17.88522 -17.13385 -16.66177 -16.53690 -16.38426 -15.29196 -15.23749 -15.10299 -14.73293 -14.62967 -14.33697 -14.24053 -13.65255 -13.41697 -13.32359 -12.96396 -12.67034 -12.30424 -12.19490 -12.16585 -11.78313 -11.44338 -11.27914 -11.02174 -10.71557 -10.65507 -10.41781 -9.51593 -8.41332 -8.27999 -6.29630 0.12913 0.27529 0.47734 1.29459 1.31847 1.37542 1.39862 2.31666 2.61248 3.04501 3.23521 3.25105 3.74746 3.94573 4.15488 4.18704 4.22565 4.27642 4.30967 4.38092 4.45606 4.64587 4.75480 4.80210 4.88954 4.95600 5.06524 5.16647 5.20026 5.31745 5.40867 5.51452 5.62592 5.76342 5.93231 6.33389 6.75696 7.33322 8.88245 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.007353 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.741006 B = 3806.840539 C = 4146.604207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.128 6.128 3 C -0.126 4.126 4 C -0.127 4.127 5 C -0.035 4.035 6 C 0.071 3.929 7 H 0.046 0.954 8 C -0.486 4.486 9 H 0.042 0.958 10 C 0.017 3.983 11 N -0.945 5.945 12 Si 0.923 3.077 13 H -0.263 1.263 14 H -0.294 1.294 15 H -0.241 1.241 16 C -0.137 4.137 17 C -0.177 4.177 18 C -0.178 4.178 19 C -0.091 4.091 20 C -0.128 4.128 21 C 0.074 3.926 22 F -0.140 7.140 23 H 0.080 0.920 24 H 0.136 0.864 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.264 0.736 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.902 -9.570 10.407 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.113 5.887 3 C -0.239 4.239 4 C -0.150 4.150 5 C -0.038 4.038 6 C 0.052 3.948 7 H 0.064 0.936 8 C -0.524 4.524 9 H 0.061 0.939 10 C -0.181 4.181 11 N -0.585 5.585 12 Si 0.748 3.252 13 H -0.188 1.188 14 H -0.220 1.220 15 H -0.165 1.165 16 C -0.156 4.156 17 C -0.214 4.214 18 C -0.215 4.215 19 C -0.112 4.112 20 C -0.148 4.148 21 C 0.049 3.951 22 F -0.119 7.119 23 H 0.099 0.901 24 H 0.155 0.845 25 H 0.112 0.888 26 H 0.150 0.850 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.152 0.848 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.487 -10.626 10.236 14.829 hybrid contribution -1.292 1.020 -0.687 1.784 sum 0.195 -9.605 9.549 13.546 Atomic orbital electron populations 1.23812 0.92022 1.08777 1.06228 1.85304 1.09438 1.01088 1.92831 1.21825 0.94929 0.98688 1.08495 1.21031 0.98142 0.92231 1.03595 1.20469 0.96242 0.93832 0.93225 1.17947 0.92885 0.91165 0.92810 0.93585 1.20959 1.06275 1.22847 1.02312 0.93931 1.25830 1.01306 0.96463 0.94458 1.70026 1.35445 1.44752 1.08286 0.86110 0.80548 0.80967 0.77621 1.18817 1.22028 1.16518 1.22363 0.95182 1.01882 0.96160 1.23119 1.02335 0.99652 0.96251 1.22769 1.01881 0.94259 1.02607 1.20979 0.91535 0.99958 0.98687 1.21234 1.01694 0.89929 1.01954 1.17144 0.83165 0.86875 1.07949 1.91443 1.60188 1.65930 1.94345 0.90077 0.84540 0.88793 0.84954 0.92703 0.88255 0.89461 0.87195 0.88145 0.91187 0.84823 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.15 113.37 1.04 -1.93 16 2 S -0.13 -3.64 22.17 -56.49 -1.25 -4.90 16 3 C -0.13 -4.32 6.11 22.64 0.14 -4.19 16 4 C -0.13 -4.55 8.98 22.40 0.20 -4.35 16 5 C -0.04 -1.38 4.77 -19.88 -0.09 -1.47 16 6 C 0.07 2.97 2.03 -12.28 -0.02 2.95 16 7 H 0.05 1.93 4.05 -2.39 -0.01 1.92 16 8 C -0.49 -25.32 8.26 25.60 0.21 -25.11 16 9 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 10 C 0.02 0.92 5.47 84.66 0.46 1.38 16 11 N -0.95 -56.72 13.96 21.45 0.30 -56.42 16 12 Si 0.92 41.34 27.24 68.60 1.87 43.20 16 13 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 15 H -0.24 -9.67 6.39 99.48 0.64 -9.04 16 16 C -0.14 -4.95 4.93 -10.79 -0.05 -5.01 16 17 C -0.18 -5.24 10.18 30.62 0.31 -4.93 16 18 C -0.18 -6.13 10.01 30.62 0.31 -5.82 16 19 C -0.09 -3.29 8.66 22.30 0.19 -3.10 16 20 C -0.13 -4.14 10.02 22.29 0.22 -3.92 16 21 C 0.07 2.52 7.28 22.49 0.16 2.68 16 22 F -0.14 -4.70 16.76 44.97 0.75 -3.95 16 23 H 0.08 1.84 7.74 -2.39 -0.02 1.82 16 24 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.09 1.85 7.76 -2.39 -0.02 1.84 16 26 H 0.13 4.40 5.77 -2.91 -0.02 4.39 16 27 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.10 3.40 7.41 -2.39 -0.02 3.38 16 29 H 0.09 2.53 8.08 -2.39 -0.02 2.51 16 30 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.13 4.71 7.79 -2.91 -0.02 4.69 16 34 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -61.22 302.18 5.78 -55.45 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.03 Total: 19.42 kcal Atomic # 6 Polarization: -55.88 SS G_CDS: 3.08 Total: -52.81 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.30 Total: -56.42 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.75 Total: -3.95 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.87 Total: 43.20 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.25 Total: -4.90 kcal Total: -61.22 5.78 -55.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260298996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.250 kcal (2) G-P(sol) polarization free energy of solvation -61.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds