Wall clock time and date at job start Mon Mar 30 2020 07:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76198 * 102.99671 * 2 1 4 4 C 1.38895 * 120.08920 * 0.25307 * 3 2 1 5 5 C 1.38136 * 119.94302 * 180.31906 * 4 3 2 6 6 C 1.50702 * 119.94251 * 179.70859 * 5 4 3 7 7 H 1.09000 * 109.46490 * 359.72174 * 6 5 4 8 8 C 1.50696 * 109.47168 * 119.72056 * 6 5 4 9 9 H 1.07999 * 120.00202 * 359.97438 * 8 6 5 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 6 5 11 11 N 1.31514 * 119.99573 * 0.27650 * 10 8 6 12 12 Si 1.86800 * 119.99781 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47035 * 60.00183 * 12 10 8 14 14 H 1.48503 * 109.46845 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47237 * 299.99939 * 12 10 8 16 16 C 1.53001 * 109.46721 * 239.72420 * 6 5 4 17 17 C 1.52999 * 117.49512 * 128.74687 * 16 6 5 18 18 C 1.52992 * 117.50066 * 60.08579 * 16 6 5 19 19 C 1.38288 * 120.11702 * 359.42658 * 5 4 3 20 20 C 1.38313 * 120.16931 * 0.27700 * 19 5 4 21 21 C 1.38256 * 120.05650 * 0.02562 * 20 19 5 22 22 F 1.35095 * 120.05673 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47162 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47058 * 299.99960 * 1 2 3 25 25 H 1.08994 * 109.47502 * 59.99919 * 1 2 3 26 26 H 1.08001 * 120.02764 * 0.02562 * 4 3 2 27 27 H 0.97001 * 120.00651 * 359.71956 * 11 10 8 28 28 H 1.08999 * 115.54378 * 274.40696 * 16 6 5 29 29 H 1.08994 * 117.50487 * 359.97438 * 17 16 6 30 30 H 1.09001 * 117.49791 * 145.02006 * 17 16 6 31 31 H 1.09000 * 117.50086 * 214.97634 * 18 16 6 32 32 H 1.09002 * 117.50188 * 359.97438 * 18 16 6 33 33 H 1.07997 * 119.91699 * 180.30474 * 19 5 4 34 34 H 1.08001 * 119.96547 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1959 2.6656 0.0053 5 6 1.5099 4.0108 -0.0014 6 6 0.4093 5.0402 -0.0023 7 1 -0.5580 4.5377 -0.0021 8 6 0.5274 5.9030 1.2276 9 1 1.3200 5.7236 1.9390 10 6 -0.3770 6.9208 1.4452 11 7 -1.3459 7.1350 0.5821 12 14 -0.2310 7.9898 2.9701 13 1 1.0867 8.6746 2.9701 14 1 -1.3155 9.0042 2.9691 15 1 -0.3477 7.1408 4.1829 16 6 0.5297 5.9144 -1.2521 17 6 -0.7224 6.0919 -2.1133 18 6 0.4327 5.2200 -2.6119 19 6 2.8326 4.4146 -0.0014 20 6 3.8465 3.4738 -0.0005 21 6 3.5403 2.1256 -0.0001 22 9 4.5306 1.2068 0.0003 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.1625 2.3519 0.0099 27 1 -1.4219 6.5797 -0.2096 28 1 1.2073 6.7640 -1.1680 29 1 -1.6318 5.5857 -1.7897 30 1 -0.8683 7.0582 -2.5961 31 1 1.0462 5.6129 -3.4227 32 1 0.2834 4.1402 -2.6162 33 1 3.0744 5.4671 -0.0016 34 1 4.8783 3.7928 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260299001.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:41 Heat of formation + Delta-G solvation = -7.186287 kcal Electronic energy + Delta-G solvation = -17884.234451 eV Core-core repulsion = 15016.104533 eV Total energy + Delta-G solvation = -2868.129918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.54639 -38.98603 -36.73617 -32.88756 -31.14405 -30.99822 -28.82930 -26.70498 -23.44626 -22.82603 -21.89707 -21.37583 -19.51429 -17.57456 -17.01770 -16.54881 -15.64192 -15.32742 -15.07261 -14.24626 -14.00022 -13.79972 -13.68227 -13.55108 -13.38249 -13.06419 -12.42408 -12.31871 -11.98430 -11.64093 -11.00380 -10.87401 -10.85939 -10.51225 -10.48069 -10.16169 -9.98348 -9.64171 -9.48040 -9.19053 -8.69905 -8.41184 -8.05682 -7.19590 -6.35557 -4.16770 1.47995 1.61540 1.63914 2.47977 3.40111 3.40774 3.59515 4.00726 4.47801 4.56173 4.65944 5.06051 5.08229 5.09795 5.26850 5.46103 5.58058 5.63605 5.68110 5.78352 5.84148 5.89500 6.06370 6.23975 6.31510 6.45117 6.55100 6.65815 6.72537 6.80304 6.91130 7.11210 7.30001 7.48120 8.05285 8.36297 8.83047 9.57277 11.00766 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019818 B = 0.006132 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.485338 B = 4564.961291 C = 4762.859834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.119 6.119 3 C -0.122 4.122 4 C -0.117 4.117 5 C -0.010 4.010 6 C 0.093 3.907 7 H 0.026 0.974 8 C -0.599 4.599 9 H 0.053 0.947 10 C 0.028 3.972 11 N -0.910 5.910 12 Si 1.063 2.937 13 H -0.288 1.288 14 H -0.283 1.283 15 H -0.288 1.288 16 C -0.107 4.107 17 C -0.168 4.168 18 C -0.208 4.208 19 C -0.080 4.080 20 C -0.140 4.140 21 C 0.086 3.914 22 F -0.141 7.141 23 H 0.105 0.895 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.126 0.874 27 H 0.284 0.716 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -8.597 -3.126 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.121 5.879 3 C -0.235 4.235 4 C -0.140 4.140 5 C -0.012 4.012 6 C 0.075 3.925 7 H 0.044 0.956 8 C -0.637 4.637 9 H 0.072 0.928 10 C -0.179 4.179 11 N -0.547 5.547 12 Si 0.892 3.108 13 H -0.214 1.214 14 H -0.208 1.208 15 H -0.215 1.215 16 C -0.126 4.126 17 C -0.205 4.205 18 C -0.245 4.245 19 C -0.100 4.100 20 C -0.160 4.160 21 C 0.061 3.939 22 F -0.120 7.120 23 H 0.124 0.876 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.143 0.857 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.153 0.847 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.320 -8.421 -2.338 9.749 hybrid contribution 0.020 -0.280 -0.795 0.843 sum 4.340 -8.702 -3.133 10.216 Atomic orbital electron populations 1.23667 0.94797 1.06703 1.06083 1.85303 1.06329 1.03011 1.93236 1.21611 0.94956 0.97283 1.09638 1.20996 0.97480 0.92537 1.03019 1.20290 0.95877 0.93342 0.91733 1.17673 0.91051 0.90521 0.93278 0.95611 1.21830 1.17256 1.18024 1.06541 0.92850 1.25707 0.92739 0.96918 1.02509 1.70753 1.30723 1.40776 1.12405 0.83625 0.76101 0.76215 0.74905 1.21411 1.20803 1.21484 1.22668 0.99269 1.00496 0.90155 1.22779 0.93103 1.00173 1.04429 1.23026 1.03851 0.98130 0.99504 1.21005 0.91535 0.99696 0.97738 1.21034 1.00680 0.90518 1.03739 1.16958 0.82933 0.86444 1.07547 1.91446 1.60292 1.65943 1.94324 0.87605 0.89500 0.89704 0.85669 0.90135 0.88839 0.89493 0.89896 0.90297 0.90160 0.84658 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.15 101.05 0.92 -0.74 16 2 S -0.12 -1.78 22.17 -107.50 -2.38 -4.17 16 3 C -0.12 -2.14 6.11 -39.00 -0.24 -2.38 16 4 C -0.12 -2.16 8.98 -39.38 -0.35 -2.51 16 5 C -0.01 -0.21 4.39 -104.64 -0.46 -0.67 16 6 C 0.09 2.13 1.85 -92.92 -0.17 1.96 16 7 H 0.03 0.63 7.49 -51.93 -0.39 0.25 16 8 C -0.60 -15.47 8.22 -34.44 -0.28 -15.75 16 9 H 0.05 1.40 7.60 -52.49 -0.40 1.00 16 10 C 0.03 0.74 5.30 -17.82 -0.09 0.65 16 11 N -0.91 -25.40 13.38 55.43 0.74 -24.66 16 12 Si 1.06 23.96 29.90 -169.99 -5.08 18.88 16 13 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 16 C -0.11 -2.28 3.86 -90.62 -0.35 -2.63 16 17 C -0.17 -3.35 8.15 -26.69 -0.22 -3.57 16 18 C -0.21 -3.78 9.87 -26.70 -0.26 -4.05 16 19 C -0.08 -1.48 8.81 -39.54 -0.35 -1.83 16 20 C -0.14 -2.34 10.02 -39.55 -0.40 -2.74 16 21 C 0.09 1.52 7.28 -39.24 -0.29 1.23 16 22 F -0.14 -2.45 16.76 2.25 0.04 -2.41 16 23 H 0.11 0.96 8.14 -51.92 -0.42 0.53 16 24 H 0.09 1.02 7.74 -51.92 -0.40 0.62 16 25 H 0.08 0.96 7.76 -51.93 -0.40 0.55 16 26 H 0.13 2.15 5.77 -52.49 -0.30 1.85 16 27 H 0.28 7.57 3.56 -40.82 -0.15 7.42 16 28 H 0.09 2.10 8.11 -51.93 -0.42 1.68 16 29 H 0.09 1.79 7.42 -51.93 -0.39 1.40 16 30 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.14 2.47 8.05 -52.49 -0.42 2.05 16 34 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -27.92 299.65 -8.89 -36.81 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.18 Total: 4.06 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: -2.54 Total: -33.02 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.74 Total: -24.66 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.08 Total: 18.88 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.38 Total: -4.17 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.92 -8.89 -36.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299001.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.619 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds