Wall clock time and date at job start Mon Mar 30 2020 07:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76198 * 102.99671 * 2 1 4 4 C 1.38895 * 120.08920 * 0.25307 * 3 2 1 5 5 C 1.38136 * 119.94302 * 180.31906 * 4 3 2 6 6 C 1.50702 * 119.94251 * 179.70859 * 5 4 3 7 7 H 1.09000 * 109.46490 * 359.72174 * 6 5 4 8 8 C 1.50696 * 109.47168 * 119.72056 * 6 5 4 9 9 H 1.07999 * 120.00202 * 359.97438 * 8 6 5 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 6 5 11 11 N 1.31514 * 119.99573 * 0.27650 * 10 8 6 12 12 Si 1.86800 * 119.99781 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47035 * 60.00183 * 12 10 8 14 14 H 1.48503 * 109.46845 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47237 * 299.99939 * 12 10 8 16 16 C 1.53001 * 109.46721 * 239.72420 * 6 5 4 17 17 C 1.52999 * 117.49512 * 128.74687 * 16 6 5 18 18 C 1.52992 * 117.50066 * 60.08579 * 16 6 5 19 19 C 1.38288 * 120.11702 * 359.42658 * 5 4 3 20 20 C 1.38313 * 120.16931 * 0.27700 * 19 5 4 21 21 C 1.38256 * 120.05650 * 0.02562 * 20 19 5 22 22 F 1.35095 * 120.05673 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47162 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47058 * 299.99960 * 1 2 3 25 25 H 1.08994 * 109.47502 * 59.99919 * 1 2 3 26 26 H 1.08001 * 120.02764 * 0.02562 * 4 3 2 27 27 H 0.97001 * 120.00651 * 359.71956 * 11 10 8 28 28 H 1.08999 * 115.54378 * 274.40696 * 16 6 5 29 29 H 1.08994 * 117.50487 * 359.97438 * 17 16 6 30 30 H 1.09001 * 117.49791 * 145.02006 * 17 16 6 31 31 H 1.09000 * 117.50086 * 214.97634 * 18 16 6 32 32 H 1.09002 * 117.50188 * 359.97438 * 18 16 6 33 33 H 1.07997 * 119.91699 * 180.30474 * 19 5 4 34 34 H 1.08001 * 119.96547 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1959 2.6656 0.0053 5 6 1.5099 4.0108 -0.0014 6 6 0.4093 5.0402 -0.0023 7 1 -0.5580 4.5377 -0.0021 8 6 0.5274 5.9030 1.2276 9 1 1.3200 5.7236 1.9390 10 6 -0.3770 6.9208 1.4452 11 7 -1.3459 7.1350 0.5821 12 14 -0.2310 7.9898 2.9701 13 1 1.0867 8.6746 2.9701 14 1 -1.3155 9.0042 2.9691 15 1 -0.3477 7.1408 4.1829 16 6 0.5297 5.9144 -1.2521 17 6 -0.7224 6.0919 -2.1133 18 6 0.4327 5.2200 -2.6119 19 6 2.8326 4.4146 -0.0014 20 6 3.8465 3.4738 -0.0005 21 6 3.5403 2.1256 -0.0001 22 9 4.5306 1.2068 0.0003 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.1625 2.3519 0.0099 27 1 -1.4219 6.5797 -0.2096 28 1 1.2073 6.7640 -1.1680 29 1 -1.6318 5.5857 -1.7897 30 1 -0.8683 7.0582 -2.5961 31 1 1.0462 5.6129 -3.4227 32 1 0.2834 4.1402 -2.6162 33 1 3.0744 5.4671 -0.0016 34 1 4.8783 3.7928 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260299001.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:40 Heat of formation + Delta-G solvation = -18.848004 kcal Electronic energy + Delta-G solvation = -17884.740141 eV Core-core repulsion = 15016.104533 eV Total energy + Delta-G solvation = -2868.635608 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.90971 -40.48688 -38.31963 -34.75222 -32.63206 -32.47898 -29.83364 -28.39479 -25.30191 -24.25790 -23.42203 -22.88955 -21.16853 -19.07200 -18.74548 -17.89258 -17.08549 -16.71133 -16.59207 -15.81729 -15.46623 -15.24649 -15.15063 -14.86054 -14.65329 -14.54903 -13.96755 -13.55909 -13.43131 -13.22441 -12.72013 -12.49138 -12.35117 -12.09826 -12.04565 -11.90946 -11.36260 -11.34141 -10.95713 -10.70143 -10.52683 -10.31483 -9.56675 -8.47967 -8.38455 -6.24157 0.07670 0.21952 0.44811 1.34750 1.57063 1.62250 1.81504 2.53569 2.65564 3.06316 3.18747 3.27471 3.73600 3.96368 4.02917 4.17756 4.20338 4.23998 4.24695 4.31541 4.34487 4.64460 4.74932 4.77896 4.79677 4.90973 5.02525 5.08496 5.21401 5.26122 5.31221 5.45304 5.77909 5.88255 6.14167 6.32512 6.80507 7.56421 8.96472 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019818 B = 0.006132 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.485338 B = 4564.961291 C = 4762.859834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.124 6.124 3 C -0.126 4.126 4 C -0.123 4.123 5 C -0.030 4.030 6 C 0.097 3.903 7 H 0.001 0.999 8 C -0.606 4.606 9 H 0.044 0.956 10 C -0.017 4.017 11 N -0.940 5.940 12 Si 1.102 2.898 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.279 1.279 16 C -0.125 4.125 17 C -0.173 4.173 18 C -0.173 4.173 19 C -0.089 4.089 20 C -0.127 4.127 21 C 0.077 3.923 22 F -0.139 7.139 23 H 0.136 0.864 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.132 0.868 27 H 0.283 0.717 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 -9.641 -3.412 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.117 5.883 3 C -0.239 4.239 4 C -0.146 4.146 5 C -0.032 4.032 6 C 0.079 3.921 7 H 0.019 0.981 8 C -0.644 4.644 9 H 0.062 0.938 10 C -0.218 4.218 11 N -0.578 5.578 12 Si 0.926 3.074 13 H -0.199 1.199 14 H -0.213 1.213 15 H -0.204 1.204 16 C -0.144 4.144 17 C -0.210 4.210 18 C -0.210 4.210 19 C -0.109 4.109 20 C -0.147 4.147 21 C 0.052 3.948 22 F -0.117 7.117 23 H 0.154 0.846 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.149 0.851 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.150 0.850 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.172 -9.489 -2.632 11.123 hybrid contribution -0.240 -0.077 -0.717 0.760 sum 4.932 -9.566 -3.349 11.271 Atomic orbital electron populations 1.23795 0.91969 1.08721 1.06209 1.85312 1.09448 1.00778 1.92772 1.21814 0.94833 0.98774 1.08443 1.21013 0.98173 0.92087 1.03316 1.20142 0.95746 0.93473 0.93801 1.17467 0.90854 0.90841 0.92947 0.98133 1.22127 1.16524 1.18247 1.07470 0.93776 1.26826 0.92489 0.98218 1.04301 1.70813 1.31933 1.41806 1.13288 0.83105 0.76493 0.75106 0.72687 1.19855 1.21299 1.20444 1.22390 1.00097 1.00666 0.91224 1.22746 0.92757 1.00935 1.04569 1.23035 1.01941 0.98198 0.97831 1.20984 0.91403 0.99994 0.98563 1.21242 1.01673 0.89845 1.01929 1.17139 0.83158 0.86849 1.07616 1.91452 1.60113 1.65880 1.94296 0.84597 0.89702 0.89246 0.85051 0.90271 0.90457 0.90629 0.89423 0.87898 0.89497 0.84967 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.15 113.37 1.04 -1.85 16 2 S -0.12 -3.46 22.17 -56.49 -1.25 -4.72 16 3 C -0.13 -4.23 6.11 22.64 0.14 -4.09 16 4 C -0.12 -4.43 8.98 22.40 0.20 -4.23 16 5 C -0.03 -1.19 4.39 -19.88 -0.09 -1.28 16 6 C 0.10 4.53 1.85 -12.29 -0.02 4.50 16 7 H 0.00 0.03 7.49 -2.39 -0.02 0.02 16 8 C -0.61 -31.85 8.22 25.60 0.21 -31.64 16 9 H 0.04 2.34 7.60 -2.91 -0.02 2.32 16 10 C -0.02 -0.91 5.30 84.66 0.45 -0.46 16 11 N -0.94 -53.46 13.38 21.45 0.29 -53.17 16 12 Si 1.10 48.53 29.90 68.60 2.05 50.58 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 14 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 16 C -0.12 -5.36 3.86 -10.80 -0.04 -5.40 16 17 C -0.17 -6.92 8.15 30.62 0.25 -6.67 16 18 C -0.17 -6.06 9.87 30.62 0.30 -5.76 16 19 C -0.09 -3.25 8.81 22.30 0.20 -3.05 16 20 C -0.13 -4.03 10.02 22.29 0.22 -3.80 16 21 C 0.08 2.59 7.28 22.49 0.16 2.75 16 22 F -0.14 -4.52 16.76 44.97 0.75 -3.76 16 23 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.08 1.84 7.74 -2.39 -0.02 1.82 16 25 H 0.09 1.82 7.76 -2.39 -0.02 1.80 16 26 H 0.13 4.45 5.77 -2.91 -0.02 4.44 16 27 H 0.28 15.47 3.56 -92.71 -0.33 15.14 16 28 H 0.08 3.54 8.11 -2.39 -0.02 3.52 16 29 H 0.08 3.18 7.42 -2.39 -0.02 3.16 16 30 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.13 4.82 8.05 -2.91 -0.02 4.80 16 34 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -59.64 299.65 6.39 -53.25 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 1.54 Total: 18.80 kcal Atomic # 6 Polarization: -63.99 SS G_CDS: 3.02 Total: -60.98 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.29 Total: -53.17 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.75 Total: -3.76 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.05 Total: 50.58 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.25 Total: -4.72 kcal Total: -59.64 6.39 -53.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299001.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.400 kcal (2) G-P(sol) polarization free energy of solvation -59.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds