Wall clock time and date at job start Mon Mar 30 2020 07:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76198 * 102.99938 * 2 1 4 4 C 1.38962 * 120.05348 * 0.02562 * 3 2 1 5 5 C 1.38080 * 119.94296 * 179.97438 * 4 3 2 6 6 C 1.38510 * 120.05316 * 359.97438 * 5 4 3 7 7 F 1.35100 * 119.94179 * 180.02562 * 6 5 4 8 8 C 1.38457 * 120.11077 * 359.78906 * 6 5 4 9 9 C 1.38128 * 120.05330 * 0.46068 * 8 6 5 10 10 C 1.50699 * 120.02318 * 179.79220 * 9 8 6 11 11 H 1.09002 * 109.46880 * 179.72484 * 10 9 8 12 12 C 1.50704 * 109.47112 * 59.72815 * 10 9 8 13 13 H 1.07999 * 119.99625 * 275.49535 * 12 10 9 14 14 C 1.37871 * 119.99774 * 95.49800 * 12 10 9 15 15 N 1.31515 * 120.00399 * 5.44283 * 14 12 10 16 16 Si 1.86807 * 119.99844 * 185.44055 * 14 12 10 17 17 H 1.48498 * 109.46911 * 90.00300 * 16 14 12 18 18 H 1.48501 * 109.47306 * 210.00053 * 16 14 12 19 19 H 1.48495 * 109.47212 * 330.00227 * 16 14 12 20 20 C 1.53000 * 109.47187 * 299.72361 * 10 9 8 21 21 C 1.53006 * 117.49517 * 177.42958 * 20 10 9 22 22 C 1.53002 * 60.03001 * 107.48105 * 21 20 10 23 23 H 1.09005 * 109.46922 * 59.99694 * 1 2 3 24 24 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46921 * 300.00326 * 1 2 3 26 26 H 1.07997 * 120.02945 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.97128 * 180.02562 * 5 4 3 28 28 H 1.08000 * 119.97312 * 180.23422 * 8 6 5 29 29 H 0.97003 * 120.00204 * 180.02562 * 15 14 12 30 30 H 1.08997 * 115.55002 * 31.76546 * 20 10 9 31 31 H 1.08999 * 117.49503 * 214.98189 * 21 20 10 32 32 H 1.09001 * 117.50075 * 359.97438 * 21 20 10 33 33 H 1.08998 * 117.50311 * 107.50210 * 22 21 20 34 34 H 1.09008 * 117.49632 * 252.52211 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1950 2.6655 0.0005 5 6 1.5082 4.0103 0.0011 6 6 2.8331 4.4139 0.0016 7 9 3.1370 5.7303 0.0027 8 6 3.8466 3.4706 0.0060 9 6 3.5385 2.1242 0.0003 10 6 4.6421 1.0981 0.0004 11 1 4.2084 0.0980 0.0004 12 6 5.4937 1.2763 1.2309 13 1 6.2961 1.9991 1.2322 14 6 5.2482 0.5165 2.3550 15 7 4.3431 -0.4369 2.3195 16 14 6.2015 0.8414 3.9283 17 1 5.4745 1.8424 4.7497 18 1 6.3375 -0.4231 4.6948 19 1 7.5502 1.3634 3.5911 20 6 5.5068 1.2790 -1.2489 21 6 6.7242 0.3652 -1.4037 22 6 5.4929 0.1541 -2.2869 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.1617 2.3512 0.0014 27 1 0.7194 4.7480 0.0019 28 1 4.8790 3.7879 0.0103 29 1 4.1702 -0.9712 3.1105 30 1 5.5953 2.3017 -1.6152 31 1 7.6135 0.7867 -1.8723 32 1 6.9093 -0.3645 -0.6154 33 1 5.5720 0.4367 -3.3367 34 1 4.8676 -0.7144 -2.0795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260299065.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:19 Heat of formation + Delta-G solvation = -5.325215 kcal Electronic energy + Delta-G solvation = -18067.059723 eV Core-core repulsion = 15199.010507 eV Total energy + Delta-G solvation = -2868.049216 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -48.29934 -38.57181 -36.43734 -33.00370 -31.18729 -30.15403 -28.33231 -27.18341 -23.81501 -22.32586 -21.46559 -21.29741 -19.14713 -17.00209 -16.63222 -16.38053 -15.47002 -15.00123 -14.72502 -14.44857 -14.23714 -13.77208 -13.39334 -13.20278 -12.88720 -12.42992 -12.34736 -11.93312 -11.67479 -11.35725 -11.24341 -10.95463 -10.68492 -10.56095 -10.46376 -9.94526 -9.60178 -9.45710 -9.03182 -8.80198 -8.74103 -8.44010 -8.08395 -6.45968 -6.03912 -4.08481 1.74555 1.97618 2.25977 3.18107 3.29888 3.36817 3.39496 4.23034 4.40685 4.80932 4.89267 5.22432 5.38900 5.41369 5.43382 5.44429 5.66353 5.85044 5.93366 5.96453 6.03961 6.14521 6.36164 6.42920 6.48859 6.59626 6.74477 6.83341 6.89630 7.04790 7.07563 7.31895 7.58997 7.76410 7.88065 8.28066 8.96008 9.52825 11.00782 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.008966 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.502626 B = 3122.086285 C = 3360.103701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 S -0.041 6.041 3 C -0.105 4.105 4 C -0.116 4.116 5 C -0.167 4.167 6 C 0.078 3.922 7 F -0.153 7.153 8 C -0.134 4.134 9 C 0.025 3.975 10 C 0.088 3.912 11 H 0.088 0.912 12 C -0.508 4.508 13 H 0.058 0.942 14 C 0.071 3.929 15 N -0.865 5.865 16 Si 0.886 3.114 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.123 4.123 21 C -0.167 4.167 22 C -0.197 4.197 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.263 0.737 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 2.221 -5.655 8.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.345 4.345 2 S 0.203 5.797 3 C -0.218 4.218 4 C -0.140 4.140 5 C -0.188 4.188 6 C 0.056 3.944 7 F -0.131 7.131 8 C -0.155 4.155 9 C 0.019 3.981 10 C 0.069 3.931 11 H 0.106 0.894 12 C -0.545 4.545 13 H 0.076 0.924 14 C -0.134 4.134 15 N -0.501 5.501 16 Si 0.714 3.286 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.142 4.142 21 C -0.204 4.204 22 C -0.234 4.234 23 H 0.090 0.910 24 H 0.116 0.884 25 H 0.093 0.907 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.927 1.003 -5.534 7.477 hybrid contribution -0.430 1.740 1.102 2.104 sum -5.356 2.744 -4.431 7.474 Atomic orbital electron populations 1.23820 1.00510 1.05894 1.04307 1.86281 0.99935 1.01860 1.91671 1.21782 0.96236 0.97234 1.06525 1.20816 0.97972 0.92161 1.03090 1.20645 0.94422 0.96250 1.07438 1.17728 0.93904 0.77235 1.05484 1.91415 1.94130 1.33205 1.94396 1.20904 0.98675 0.92275 1.03597 1.20424 0.93364 0.94641 0.89673 1.17827 0.89428 0.94629 0.91246 0.89434 1.20815 1.15220 1.22010 0.96460 0.92354 1.24980 0.95103 0.94621 0.98662 1.69937 1.31990 1.19049 1.29105 0.86684 0.80476 0.77689 0.83766 1.20705 1.21229 1.19838 1.22473 1.00501 0.93704 0.97511 1.22716 0.91283 1.04295 1.02075 1.23008 1.03003 1.02114 0.95318 0.91035 0.88376 0.90682 0.86207 0.85989 0.84977 0.92703 0.89958 0.90692 0.88380 0.90607 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 9.15 101.05 0.92 -1.55 16 2 S -0.04 -0.80 20.48 -107.50 -2.20 -3.00 16 3 C -0.10 -2.15 6.11 -39.06 -0.24 -2.39 16 4 C -0.12 -2.06 9.36 -39.37 -0.37 -2.43 16 5 C -0.17 -2.92 10.02 -39.54 -0.40 -3.31 16 6 C 0.08 1.50 7.30 -39.40 -0.29 1.21 16 7 F -0.15 -2.82 17.26 2.25 0.04 -2.78 16 8 C -0.13 -2.78 8.56 -39.54 -0.34 -3.12 16 9 C 0.02 0.54 4.79 -104.41 -0.50 0.04 16 10 C 0.09 2.04 2.16 -92.92 -0.20 1.84 16 11 H 0.09 2.20 4.85 -51.87 -0.25 1.95 16 12 C -0.51 -13.01 7.46 -34.44 -0.26 -13.26 16 13 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 14 C 0.07 1.86 5.45 -17.82 -0.10 1.77 16 15 N -0.87 -23.20 12.76 55.43 0.71 -22.49 16 16 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.12 -2.53 5.07 -90.58 -0.46 -2.99 16 21 C -0.17 -3.18 9.81 -26.73 -0.26 -3.45 16 22 C -0.20 -3.60 10.18 -26.69 -0.27 -3.88 16 23 H 0.07 0.89 7.75 -51.92 -0.40 0.48 16 24 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.07 1.02 7.75 -51.92 -0.40 0.62 16 26 H 0.12 1.79 5.88 -52.49 -0.31 1.49 16 27 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.13 2.68 7.90 -52.49 -0.41 2.27 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.08 1.62 7.41 -51.93 -0.38 1.23 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.10 2.05 8.09 -51.93 -0.42 1.63 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.69 8.04 -51.92 -0.42 1.27 16 LS Contribution 303.06 15.07 4.57 4.57 Total: -1.00 -26.82 303.06 -8.90 -35.72 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.24 Total: 3.79 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: -2.75 Total: -31.52 kcal Atomic # 7 Polarization: -23.20 SS G_CDS: 0.71 Total: -22.49 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.20 Total: -3.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.82 -8.90 -35.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299065.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.393 kcal (2) G-P(sol) polarization free energy of solvation -26.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds