Wall clock time and date at job start Mon Mar 30 2020 07:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76198 * 102.99938 * 2 1 4 4 C 1.38962 * 120.05348 * 0.02562 * 3 2 1 5 5 C 1.38080 * 119.94296 * 179.97438 * 4 3 2 6 6 C 1.38510 * 120.05316 * 359.97438 * 5 4 3 7 7 F 1.35100 * 119.94179 * 180.02562 * 6 5 4 8 8 C 1.38457 * 120.11077 * 359.78906 * 6 5 4 9 9 C 1.38128 * 120.05330 * 0.46068 * 8 6 5 10 10 C 1.50699 * 120.02318 * 179.79220 * 9 8 6 11 11 H 1.09002 * 109.46880 * 179.72484 * 10 9 8 12 12 C 1.50704 * 109.47112 * 59.72815 * 10 9 8 13 13 H 1.07999 * 119.99625 * 275.49535 * 12 10 9 14 14 C 1.37871 * 119.99774 * 95.49800 * 12 10 9 15 15 N 1.31515 * 120.00399 * 5.44283 * 14 12 10 16 16 Si 1.86807 * 119.99844 * 185.44055 * 14 12 10 17 17 H 1.48498 * 109.46911 * 90.00300 * 16 14 12 18 18 H 1.48501 * 109.47306 * 210.00053 * 16 14 12 19 19 H 1.48495 * 109.47212 * 330.00227 * 16 14 12 20 20 C 1.53000 * 109.47187 * 299.72361 * 10 9 8 21 21 C 1.53006 * 117.49517 * 177.42958 * 20 10 9 22 22 C 1.53002 * 60.03001 * 107.48105 * 21 20 10 23 23 H 1.09005 * 109.46922 * 59.99694 * 1 2 3 24 24 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46921 * 300.00326 * 1 2 3 26 26 H 1.07997 * 120.02945 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.97128 * 180.02562 * 5 4 3 28 28 H 1.08000 * 119.97312 * 180.23422 * 8 6 5 29 29 H 0.97003 * 120.00204 * 180.02562 * 15 14 12 30 30 H 1.08997 * 115.55002 * 31.76546 * 20 10 9 31 31 H 1.08999 * 117.49503 * 214.98189 * 21 20 10 32 32 H 1.09001 * 117.50075 * 359.97438 * 21 20 10 33 33 H 1.08998 * 117.50311 * 107.50210 * 22 21 20 34 34 H 1.09008 * 117.49632 * 252.52211 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1950 2.6655 0.0005 5 6 1.5082 4.0103 0.0011 6 6 2.8331 4.4139 0.0016 7 9 3.1370 5.7303 0.0027 8 6 3.8466 3.4706 0.0060 9 6 3.5385 2.1242 0.0003 10 6 4.6421 1.0981 0.0004 11 1 4.2084 0.0980 0.0004 12 6 5.4937 1.2763 1.2309 13 1 6.2961 1.9991 1.2322 14 6 5.2482 0.5165 2.3550 15 7 4.3431 -0.4369 2.3195 16 14 6.2015 0.8414 3.9283 17 1 5.4745 1.8424 4.7497 18 1 6.3375 -0.4231 4.6948 19 1 7.5502 1.3634 3.5911 20 6 5.5068 1.2790 -1.2489 21 6 6.7242 0.3652 -1.4037 22 6 5.4929 0.1541 -2.2869 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.1617 2.3512 0.0014 27 1 0.7194 4.7480 0.0019 28 1 4.8790 3.7879 0.0103 29 1 4.1702 -0.9712 3.1105 30 1 5.5953 2.3017 -1.6152 31 1 7.6135 0.7867 -1.8723 32 1 6.9093 -0.3645 -0.6154 33 1 5.5720 0.4367 -3.3367 34 1 4.8676 -0.7144 -2.0795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260299065.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:18 Heat of formation + Delta-G solvation = -16.518997 kcal Electronic energy + Delta-G solvation = -18067.545122 eV Core-core repulsion = 15199.010507 eV Total energy + Delta-G solvation = -2868.534615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.77363 -40.10874 -37.99102 -34.82920 -32.83358 -31.61970 -29.51450 -28.90392 -25.63398 -23.81981 -22.98563 -22.81725 -20.79937 -18.49409 -18.39792 -17.95003 -17.02916 -16.57995 -16.46223 -16.01470 -15.64519 -15.20859 -14.92098 -14.51264 -14.38194 -14.03831 -13.70944 -13.38745 -13.23483 -13.12892 -12.85017 -12.65108 -12.39243 -12.19550 -12.02460 -11.70268 -11.23845 -11.02247 -10.66209 -10.45951 -10.30408 -10.21979 -9.63628 -8.01492 -7.94311 -6.08717 0.23385 0.48897 0.88978 1.40553 1.43936 1.50828 1.85186 2.45117 2.73273 3.21825 3.31379 3.43177 3.96009 3.97914 4.18091 4.33136 4.38084 4.39316 4.42789 4.50587 4.63396 4.87911 4.90297 4.93750 4.98794 5.12478 5.24876 5.28583 5.32106 5.46013 5.51410 5.68797 5.81577 6.03504 6.07938 6.40631 6.99738 7.52959 9.02464 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.008966 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.502626 B = 3122.086285 C = 3360.103701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 S -0.107 6.107 3 C -0.114 4.114 4 C -0.111 4.111 5 C -0.154 4.154 6 C 0.071 3.929 7 F -0.149 7.149 8 C -0.148 4.148 9 C -0.003 4.003 10 C 0.089 3.911 11 H 0.067 0.933 12 C -0.513 4.513 13 H 0.046 0.954 14 C 0.029 3.971 15 N -0.886 5.886 16 Si 0.934 3.066 17 H -0.285 1.285 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.143 4.143 21 C -0.166 4.166 22 C -0.177 4.177 23 H 0.093 0.907 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.154 0.846 27 H 0.160 0.840 28 H 0.124 0.876 29 H 0.259 0.741 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.132 3.092 -6.373 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 S 0.136 5.864 3 C -0.227 4.227 4 C -0.135 4.135 5 C -0.174 4.174 6 C 0.049 3.951 7 F -0.128 7.128 8 C -0.169 4.169 9 C -0.008 4.008 10 C 0.070 3.930 11 H 0.085 0.915 12 C -0.551 4.551 13 H 0.064 0.936 14 C -0.173 4.173 15 N -0.522 5.522 16 Si 0.761 3.239 17 H -0.212 1.212 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.161 4.161 21 C -0.203 4.203 22 C -0.214 4.214 23 H 0.112 0.888 24 H 0.136 0.864 25 H 0.101 0.899 26 H 0.172 0.828 27 H 0.177 0.823 28 H 0.142 0.858 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.575 1.880 -6.257 9.270 hybrid contribution 0.005 1.498 1.272 1.966 sum -6.570 3.379 -4.986 8.913 Atomic orbital electron populations 1.23853 0.95260 1.07724 1.05726 1.86447 1.05725 1.02455 1.91755 1.21946 0.96333 0.97889 1.06553 1.21209 0.98978 0.91776 1.01556 1.21050 0.94418 0.96940 1.04999 1.17818 0.94435 0.77104 1.05753 1.91421 1.94219 1.32805 1.94390 1.20887 0.98966 0.92448 1.04566 1.20313 0.93951 0.94691 0.91894 1.17666 0.89831 0.94237 0.91308 0.91471 1.21020 1.15234 1.21184 0.97710 0.93579 1.25521 0.96080 0.94879 1.00773 1.70055 1.33169 1.19776 1.29235 0.85942 0.79476 0.77302 0.81208 1.21153 1.20984 1.19656 1.22422 1.01287 0.94650 0.97749 1.22702 0.92283 1.03428 1.01901 1.23011 1.01596 1.00472 0.96331 0.88798 0.86411 0.89858 0.82826 0.82274 0.85800 0.93122 0.89389 0.88177 0.90871 0.87625 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 9.15 113.37 1.04 -2.90 16 2 S -0.11 -4.12 20.48 -56.49 -1.16 -5.28 16 3 C -0.11 -4.59 6.11 22.61 0.14 -4.46 16 4 C -0.11 -3.63 9.36 22.41 0.21 -3.42 16 5 C -0.15 -4.88 10.02 22.30 0.22 -4.66 16 6 C 0.07 2.61 7.30 22.39 0.16 2.77 16 7 F -0.15 -5.28 17.26 44.97 0.78 -4.51 16 8 C -0.15 -6.17 8.56 22.30 0.19 -5.98 16 9 C 0.00 -0.13 4.79 -19.73 -0.09 -0.22 16 10 C 0.09 4.22 2.16 -12.29 -0.03 4.20 16 11 H 0.07 3.50 4.85 -2.42 -0.01 3.48 16 12 C -0.51 -27.11 7.46 25.60 0.19 -26.92 16 13 H 0.05 2.47 7.82 -2.91 -0.02 2.44 16 14 C 0.03 1.58 5.45 84.65 0.46 2.04 16 15 N -0.89 -48.75 12.76 21.45 0.27 -48.48 16 16 Si 0.93 43.44 29.54 68.60 2.03 45.46 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 C -0.14 -5.91 5.07 -10.77 -0.05 -5.96 16 21 C -0.17 -6.36 9.81 30.60 0.30 -6.06 16 22 C -0.18 -6.37 10.18 30.62 0.31 -6.06 16 23 H 0.09 1.95 7.75 -2.39 -0.02 1.93 16 24 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.08 1.97 7.75 -2.39 -0.02 1.95 16 26 H 0.15 3.91 5.88 -2.91 -0.02 3.90 16 27 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 28 H 0.12 5.19 7.90 -2.91 -0.02 5.17 16 29 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.09 3.48 7.41 -2.39 -0.02 3.46 16 31 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.07 3.15 8.09 -2.39 -0.02 3.13 16 33 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.08 2.99 8.04 -2.38 -0.02 2.98 16 Total: -1.00 -58.92 303.06 6.07 -52.85 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.10 Total: 17.57 kcal Atomic # 6 Polarization: -60.67 SS G_CDS: 3.05 Total: -57.62 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.27 Total: -48.48 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.16 Total: -5.28 kcal Total: -58.92 6.07 -52.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299065.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.332 kcal (2) G-P(sol) polarization free energy of solvation -58.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds