Wall clock time and date at job start Mon Mar 30 2020 07:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76200 * 102.99972 * 2 1 4 4 C 1.38962 * 120.05160 * 0.02562 * 3 2 1 5 5 C 1.38078 * 119.94104 * 179.69517 * 4 3 2 6 6 C 1.38494 * 120.05764 * 0.26104 * 5 4 3 7 7 F 1.35103 * 119.94589 * 179.97438 * 6 5 4 8 8 C 1.38452 * 120.11108 * 0.02562 * 6 5 4 9 9 C 1.38120 * 120.05389 * 359.97438 * 8 6 5 10 10 C 1.50705 * 120.03116 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.47504 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47049 * 300.00408 * 10 9 8 13 13 H 1.07996 * 120.00258 * 359.97438 * 12 10 9 14 14 C 1.37875 * 119.99625 * 179.97438 * 12 10 9 15 15 N 1.31513 * 120.00376 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99945 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46851 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47034 * 120.00312 * 16 14 12 19 19 H 1.48501 * 109.47385 * 240.00637 * 16 14 12 20 20 C 1.53001 * 109.46615 * 59.99999 * 10 9 8 21 21 C 1.53001 * 117.50120 * 128.74793 * 20 10 9 22 22 C 1.53001 * 117.50271 * 60.08883 * 20 10 9 23 23 H 1.08992 * 109.47224 * 60.00121 * 1 2 3 24 24 H 1.09000 * 109.46907 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47176 * 299.99600 * 1 2 3 26 26 H 1.08002 * 120.03194 * 359.97438 * 4 3 2 27 27 H 1.08008 * 119.97371 * 180.27511 * 5 4 3 28 28 H 1.08008 * 119.97761 * 179.97438 * 8 6 5 29 29 H 0.97002 * 120.00252 * 179.97438 * 15 14 12 30 30 H 1.09001 * 115.55137 * 274.41937 * 20 10 9 31 31 H 1.09004 * 117.49238 * 0.02562 * 21 20 10 32 32 H 1.09000 * 117.50250 * 145.01430 * 21 20 10 33 33 H 1.08999 * 117.50038 * 214.98093 * 22 20 10 34 34 H 1.09005 * 117.49563 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1949 2.6655 0.0005 5 6 1.5081 4.0102 0.0069 6 6 2.8329 4.4140 0.0073 7 9 3.1367 5.7304 0.0130 8 6 3.8464 3.4708 0.0008 9 6 3.5383 2.1244 -0.0056 10 6 4.6420 1.0982 -0.0121 11 1 4.2084 0.0982 -0.0162 12 6 5.4922 1.2826 -1.2427 13 1 5.2566 2.0644 -1.9496 14 6 6.5707 0.4532 -1.4661 15 7 6.8572 -0.4991 -0.6056 16 14 7.6241 0.6813 -2.9918 17 1 7.0948 1.8134 -3.7940 18 1 9.0232 0.9726 -2.5882 19 1 7.5920 -0.5603 -3.8057 20 6 5.5081 1.2729 1.2370 21 6 5.7743 0.0319 2.0914 22 6 4.8248 1.1207 2.5974 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.1616 2.3512 0.0005 27 1 0.7192 4.7480 0.0118 28 1 4.8788 3.7880 0.0007 29 1 7.6158 -1.0829 -0.7629 30 1 6.3081 2.0087 1.1552 31 1 5.3327 -0.9091 1.7632 32 1 6.7494 -0.0487 2.5719 33 1 5.1756 1.7560 3.4107 34 1 3.7581 0.8964 2.6026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260299070.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:24 Heat of formation + Delta-G solvation = -5.290112 kcal Electronic energy + Delta-G solvation = -18045.102216 eV Core-core repulsion = 15177.054522 eV Total energy + Delta-G solvation = -2868.047694 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -48.43127 -38.77455 -36.28993 -32.80156 -31.38320 -30.36867 -28.54881 -27.29863 -23.66507 -22.43293 -21.52120 -21.07272 -19.13358 -17.12426 -16.66438 -16.57797 -15.66556 -15.11957 -14.58651 -14.50644 -14.22077 -13.89129 -13.57375 -13.23493 -12.83277 -12.75437 -12.53554 -12.05455 -11.79682 -11.49795 -11.02749 -10.95679 -10.66624 -10.45465 -10.28707 -9.86070 -9.79125 -9.57901 -9.05406 -8.80400 -8.73088 -8.31943 -8.22836 -6.82098 -6.02136 -4.09622 1.54252 1.78536 1.95953 2.87769 3.28699 3.37389 3.41619 4.04990 4.42935 4.71558 5.05726 5.19790 5.22325 5.23865 5.25924 5.31896 5.68910 5.77795 5.87953 5.98808 6.16592 6.26104 6.29832 6.44346 6.55110 6.59138 6.78161 6.84467 6.99530 7.15324 7.24903 7.38680 7.47792 7.74652 7.93076 8.27518 8.91641 9.54403 11.03325 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.008220 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.737042 B = 3405.699775 C = 3943.046368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 S -0.078 6.078 3 C -0.110 4.110 4 C -0.111 4.111 5 C -0.163 4.163 6 C 0.085 3.915 7 F -0.149 7.149 8 C -0.126 4.126 9 C 0.022 3.978 10 C 0.104 3.896 11 H 0.054 0.946 12 C -0.517 4.517 13 H 0.059 0.941 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.084 4.084 21 C -0.132 4.132 22 C -0.226 4.226 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.140 0.860 29 H 0.259 0.741 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.965 3.097 3.099 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.336 4.336 2 S 0.164 5.836 3 C -0.223 4.223 4 C -0.135 4.135 5 C -0.183 4.183 6 C 0.063 3.937 7 F -0.128 7.128 8 C -0.146 4.146 9 C 0.017 3.983 10 C 0.085 3.915 11 H 0.072 0.928 12 C -0.554 4.554 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.506 5.506 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.103 4.103 21 C -0.169 4.169 22 C -0.264 4.264 23 H 0.096 0.904 24 H 0.119 0.881 25 H 0.095 0.905 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.157 0.843 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.203 1.909 3.135 9.908 hybrid contribution -0.133 1.510 -0.831 1.729 sum -9.337 3.420 2.304 10.207 Atomic orbital electron populations 1.23781 0.98730 1.06278 1.04763 1.86044 1.02198 1.02863 1.92511 1.21726 0.96321 0.96669 1.07578 1.20820 0.97992 0.92089 1.02595 1.20713 0.94564 0.96286 1.06785 1.17768 0.93831 0.77435 1.04615 1.91439 1.94106 1.32979 1.94237 1.21025 0.99208 0.92040 1.02372 1.20166 0.92936 0.94788 0.90416 1.17640 0.88668 0.91917 0.93230 0.92848 1.20967 1.11806 1.16900 1.05777 0.92291 1.24918 0.97184 0.94983 0.96198 1.70031 1.27818 1.18012 1.34762 0.86590 0.80274 0.78118 0.83396 1.19767 1.21070 1.20995 1.22158 0.99627 0.99414 0.89131 1.22432 0.97795 0.94050 1.02666 1.23095 0.98187 1.05486 0.99596 0.90407 0.88062 0.90508 0.85902 0.85630 0.84262 0.93072 0.89826 0.89435 0.91133 0.91079 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.15 101.05 0.92 -1.06 16 2 S -0.08 -1.36 20.48 -107.50 -2.20 -3.56 16 3 C -0.11 -2.06 6.11 -39.06 -0.24 -2.30 16 4 C -0.11 -1.76 9.36 -39.37 -0.37 -2.13 16 5 C -0.16 -2.58 10.02 -39.55 -0.40 -2.97 16 6 C 0.08 1.52 7.30 -39.41 -0.29 1.23 16 7 F -0.15 -2.60 17.26 2.25 0.04 -2.56 16 8 C -0.13 -2.50 8.80 -39.55 -0.35 -2.85 16 9 C 0.02 0.46 4.41 -104.41 -0.46 0.00 16 10 C 0.10 2.46 1.98 -92.92 -0.18 2.28 16 11 H 0.05 1.36 5.78 -51.88 -0.30 1.06 16 12 C -0.52 -13.52 8.22 -34.44 -0.28 -13.80 16 13 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 14 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 15 N -0.87 -23.41 11.43 55.43 0.63 -22.78 16 16 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.08 -1.91 3.87 -90.62 -0.35 -2.26 16 21 C -0.13 -2.86 9.04 -26.69 -0.24 -3.10 16 22 C -0.23 -4.48 9.87 -26.70 -0.26 -4.75 16 23 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 24 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 25 H 0.08 0.82 7.75 -51.92 -0.40 0.41 16 26 H 0.12 1.58 5.88 -52.49 -0.31 1.27 16 27 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 28 H 0.14 2.80 8.05 -52.48 -0.42 2.38 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.08 1.98 8.11 -51.93 -0.42 1.56 16 31 H 0.09 2.00 8.05 -51.93 -0.42 1.58 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 301.35 15.07 4.54 4.54 Total: -1.00 -26.95 301.35 -8.92 -35.87 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.32 Total: 2.68 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -2.59 Total: -29.92 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.63 Total: -22.78 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.20 Total: -3.56 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.95 -8.92 -35.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299070.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.577 kcal (2) G-P(sol) polarization free energy of solvation -26.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds