Wall clock time and date at job start Mon Mar 30 2020 07:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76200 * 102.99972 * 2 1 4 4 C 1.38962 * 120.05160 * 0.02562 * 3 2 1 5 5 C 1.38078 * 119.94104 * 179.69517 * 4 3 2 6 6 C 1.38494 * 120.05764 * 0.26104 * 5 4 3 7 7 F 1.35103 * 119.94589 * 179.97438 * 6 5 4 8 8 C 1.38452 * 120.11108 * 0.02562 * 6 5 4 9 9 C 1.38120 * 120.05389 * 359.97438 * 8 6 5 10 10 C 1.50705 * 120.03116 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.47504 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47049 * 300.00408 * 10 9 8 13 13 H 1.07996 * 120.00258 * 359.97438 * 12 10 9 14 14 C 1.37875 * 119.99625 * 179.97438 * 12 10 9 15 15 N 1.31513 * 120.00376 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99945 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46851 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47034 * 120.00312 * 16 14 12 19 19 H 1.48501 * 109.47385 * 240.00637 * 16 14 12 20 20 C 1.53001 * 109.46615 * 59.99999 * 10 9 8 21 21 C 1.53001 * 117.50120 * 128.74793 * 20 10 9 22 22 C 1.53001 * 117.50271 * 60.08883 * 20 10 9 23 23 H 1.08992 * 109.47224 * 60.00121 * 1 2 3 24 24 H 1.09000 * 109.46907 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47176 * 299.99600 * 1 2 3 26 26 H 1.08002 * 120.03194 * 359.97438 * 4 3 2 27 27 H 1.08008 * 119.97371 * 180.27511 * 5 4 3 28 28 H 1.08008 * 119.97761 * 179.97438 * 8 6 5 29 29 H 0.97002 * 120.00252 * 179.97438 * 15 14 12 30 30 H 1.09001 * 115.55137 * 274.41937 * 20 10 9 31 31 H 1.09004 * 117.49238 * 0.02562 * 21 20 10 32 32 H 1.09000 * 117.50250 * 145.01430 * 21 20 10 33 33 H 1.08999 * 117.50038 * 214.98093 * 22 20 10 34 34 H 1.09005 * 117.49563 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1949 2.6655 0.0005 5 6 1.5081 4.0102 0.0069 6 6 2.8329 4.4140 0.0073 7 9 3.1367 5.7304 0.0130 8 6 3.8464 3.4708 0.0008 9 6 3.5383 2.1244 -0.0056 10 6 4.6420 1.0982 -0.0121 11 1 4.2084 0.0982 -0.0162 12 6 5.4922 1.2826 -1.2427 13 1 5.2566 2.0644 -1.9496 14 6 6.5707 0.4532 -1.4661 15 7 6.8572 -0.4991 -0.6056 16 14 7.6241 0.6813 -2.9918 17 1 7.0948 1.8134 -3.7940 18 1 9.0232 0.9726 -2.5882 19 1 7.5920 -0.5603 -3.8057 20 6 5.5081 1.2729 1.2370 21 6 5.7743 0.0319 2.0914 22 6 4.8248 1.1207 2.5974 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.1616 2.3512 0.0005 27 1 0.7192 4.7480 0.0118 28 1 4.8788 3.7880 0.0007 29 1 7.6158 -1.0829 -0.7629 30 1 6.3081 2.0087 1.1552 31 1 5.3327 -0.9091 1.7632 32 1 6.7494 -0.0487 2.5719 33 1 5.1756 1.7560 3.4107 34 1 3.7581 0.8964 2.6026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260299070.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:22 Heat of formation + Delta-G solvation = -16.834714 kcal Electronic energy + Delta-G solvation = -18045.602828 eV Core-core repulsion = 15177.054522 eV Total energy + Delta-G solvation = -2868.548305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.80980 -40.24939 -37.94088 -34.69517 -32.98382 -31.72060 -29.56413 -29.02139 -25.49160 -23.83738 -23.09231 -22.71893 -20.85598 -18.56945 -18.43373 -18.01378 -17.14158 -16.52202 -16.50248 -15.91110 -15.75507 -15.27393 -14.84141 -14.54800 -14.40959 -14.30610 -13.79163 -13.47881 -13.30183 -12.89256 -12.84654 -12.68460 -12.29509 -12.16883 -12.06839 -11.68533 -11.54679 -10.96377 -10.64304 -10.52416 -10.37621 -10.15369 -9.71577 -8.19700 -8.01773 -6.15783 0.14596 0.40581 0.73083 1.39593 1.43338 1.52702 1.71057 2.44051 2.66650 3.22918 3.34083 3.40082 3.89348 3.98699 4.24799 4.30901 4.37398 4.37983 4.48704 4.50672 4.62055 4.86858 4.92281 4.94505 5.06339 5.07090 5.21416 5.28748 5.34051 5.45813 5.52250 5.65719 5.80163 5.96919 6.05310 6.35608 6.89926 7.49550 9.00467 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.008220 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.737042 B = 3405.699775 C = 3943.046368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.146 6.146 3 C -0.114 4.114 4 C -0.100 4.100 5 C -0.146 4.146 6 C 0.077 3.923 7 F -0.148 7.148 8 C -0.142 4.142 9 C -0.007 4.007 10 C 0.109 3.891 11 H 0.034 0.966 12 C -0.529 4.529 13 H 0.044 0.956 14 C 0.029 3.971 15 N -0.890 5.890 16 Si 0.942 3.058 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.101 4.101 21 C -0.136 4.136 22 C -0.192 4.192 23 H 0.092 0.908 24 H 0.121 0.879 25 H 0.096 0.904 26 H 0.163 0.837 27 H 0.165 0.835 28 H 0.121 0.879 29 H 0.259 0.741 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 3.922 3.365 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.096 5.904 3 C -0.226 4.226 4 C -0.124 4.124 5 C -0.166 4.166 6 C 0.056 3.944 7 F -0.127 7.127 8 C -0.163 4.163 9 C -0.012 4.012 10 C 0.091 3.909 11 H 0.051 0.949 12 C -0.567 4.567 13 H 0.063 0.937 14 C -0.173 4.173 15 N -0.527 5.527 16 Si 0.768 3.232 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.120 4.120 21 C -0.173 4.173 22 C -0.229 4.229 23 H 0.111 0.889 24 H 0.139 0.861 25 H 0.115 0.885 26 H 0.180 0.820 27 H 0.183 0.817 28 H 0.139 0.861 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.835 2.739 3.401 12.615 hybrid contribution 0.566 1.266 -0.915 1.661 sum -11.269 4.005 2.485 12.215 Atomic orbital electron populations 1.23853 0.92952 1.08202 1.06429 1.86258 1.08415 1.03193 1.92530 1.21840 0.96012 0.97519 1.07249 1.21252 0.99115 0.91463 1.00576 1.21137 0.94277 0.97144 1.04054 1.17840 0.94422 0.77110 1.05041 1.91439 1.94238 1.32721 1.94266 1.20907 0.99138 0.92440 1.03837 1.19934 0.93498 0.94425 0.93330 1.17387 0.89214 0.91962 0.92378 0.94875 1.21219 1.12482 1.16297 1.06730 0.93736 1.25524 0.98247 0.94994 0.98489 1.70128 1.28151 1.18539 1.35904 0.85763 0.78894 0.77835 0.80682 1.19897 1.20755 1.20726 1.21974 0.99952 0.99524 0.90532 1.22329 0.98520 0.93352 1.03073 1.23052 0.97931 1.03730 0.98209 0.88873 0.86081 0.88506 0.81983 0.81702 0.86123 0.93207 0.91838 0.91210 0.90726 0.88857 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.15 113.37 1.04 -1.85 16 2 S -0.15 -4.94 20.48 -56.49 -1.16 -6.10 16 3 C -0.11 -4.10 6.11 22.61 0.14 -3.96 16 4 C -0.10 -2.81 9.36 22.41 0.21 -2.60 16 5 C -0.15 -4.06 10.02 22.29 0.22 -3.84 16 6 C 0.08 2.66 7.30 22.38 0.16 2.82 16 7 F -0.15 -4.95 17.26 44.97 0.78 -4.18 16 8 C -0.14 -5.76 8.80 22.29 0.20 -5.56 16 9 C -0.01 -0.29 4.41 -19.73 -0.09 -0.38 16 10 C 0.11 5.35 1.98 -12.28 -0.02 5.33 16 11 H 0.03 1.77 5.78 -2.43 -0.01 1.76 16 12 C -0.53 -28.85 8.22 25.60 0.21 -28.64 16 13 H 0.04 2.48 7.60 -2.91 -0.02 2.45 16 14 C 0.03 1.57 5.30 84.65 0.45 2.02 16 15 N -0.89 -49.49 11.43 21.45 0.25 -49.24 16 16 Si 0.94 43.74 29.54 68.60 2.03 45.76 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 C -0.10 -4.72 3.87 -10.79 -0.04 -4.76 16 21 C -0.14 -6.00 9.04 30.62 0.28 -5.73 16 22 C -0.19 -7.57 9.87 30.62 0.30 -7.27 16 23 H 0.09 1.60 7.75 -2.39 -0.02 1.58 16 24 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.10 1.57 7.75 -2.39 -0.02 1.56 16 26 H 0.16 3.24 5.88 -2.91 -0.02 3.22 16 27 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.12 5.15 8.05 -2.91 -0.02 5.13 16 29 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.06 3.17 8.11 -2.39 -0.02 3.15 16 31 H 0.07 3.32 8.05 -2.38 -0.02 3.30 16 32 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -60.45 301.35 6.04 -54.40 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.10 Total: 13.77 kcal Atomic # 6 Polarization: -57.48 SS G_CDS: 3.05 Total: -54.42 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.25 Total: -49.24 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.78 Total: -4.18 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -1.16 Total: -6.10 kcal Total: -60.45 6.04 -54.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299070.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.570 kcal (2) G-P(sol) polarization free energy of solvation -60.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds