Wall clock time and date at job start Mon Mar 30 2020 07:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50690 * 120.00573 * 2 1 4 4 C 1.50706 * 119.99421 * 179.97438 * 2 1 3 5 5 O 1.42898 * 109.47235 * 0.02562 * 4 2 1 6 6 C 1.35930 * 117.00243 * 179.97438 * 5 4 2 7 7 C 1.38708 * 120.05420 * 0.02562 * 6 5 4 8 8 C 1.38152 * 119.95271 * 179.70290 * 7 6 5 9 9 C 1.38279 * 120.07551 * 0.54926 * 8 7 6 10 10 C 1.50700 * 119.93762 * 179.72726 * 9 8 7 11 11 C 1.50702 * 109.46869 * 269.72106 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.38242 * 120.12179 * 359.44706 * 9 8 7 20 20 C 1.38258 * 120.03943 * 0.27505 * 19 9 8 21 21 Cl 1.73600 * 120.03913 * 180.02562 * 20 19 9 22 22 H 1.08007 * 119.99813 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.00678 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47453 * 240.00183 * 3 2 1 25 25 H 1.08999 * 109.47109 * 0.02562 * 3 2 1 26 26 H 1.09006 * 109.47224 * 119.99927 * 3 2 1 27 27 H 1.09000 * 109.47050 * 239.99739 * 4 2 1 28 28 H 1.09003 * 109.46965 * 120.00208 * 4 2 1 29 29 H 1.08002 * 120.02430 * 359.97438 * 7 6 5 30 30 H 1.08000 * 119.96120 * 180.26893 * 8 7 6 31 31 H 1.09004 * 109.47210 * 149.72400 * 10 9 8 32 32 H 1.08994 * 109.47551 * 29.72052 * 10 9 8 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.07998 * 119.97890 * 180.25559 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3049 0.0000 4 6 2.0634 -1.3052 0.0006 5 8 1.1347 -2.3913 0.0005 6 6 1.6541 -3.6474 0.0004 7 6 3.0290 -3.8307 0.0010 8 6 3.5546 -5.1083 0.0071 9 6 2.7117 -6.2044 0.0012 10 6 3.2885 -7.5967 0.0017 11 6 3.4812 -8.0610 -1.4189 12 1 3.2133 -7.4126 -2.2401 13 6 4.0055 -9.3113 -1.6705 14 7 4.3321 -10.1006 -0.6706 15 14 4.2515 -9.8838 -3.4314 16 1 3.8091 -8.8172 -4.3651 17 1 5.6894 -10.1765 -3.6604 18 1 3.4524 -11.1127 -3.6687 19 6 1.3409 -6.0255 0.0007 20 6 0.8096 -4.7491 0.0003 21 17 -0.9118 -4.5243 0.0003 22 1 -0.5400 0.9354 0.0004 23 1 -0.5401 -0.9352 -0.0004 24 1 2.6902 1.3627 -0.8900 25 1 1.3553 2.1335 0.0005 26 1 2.6902 1.3626 0.8900 27 1 2.6900 -1.3626 0.8906 28 1 2.6900 -1.3634 -0.8894 29 1 3.6882 -2.9751 0.0011 30 1 4.6251 -5.2510 0.0120 31 1 2.6051 -8.2729 0.5154 32 1 4.2495 -7.5917 0.5159 33 1 4.7005 -10.9803 -0.8475 34 1 0.6847 -6.8832 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260302064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:37 Heat of formation + Delta-G solvation = -17.812260 kcal Electronic energy + Delta-G solvation = -17063.052141 eV Core-core repulsion = 14180.044950 eV Total energy + Delta-G solvation = -2883.007191 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.95525 -37.74365 -36.02912 -35.27175 -33.19484 -30.76379 -30.39397 -27.73897 -27.16304 -26.28935 -23.20293 -22.34527 -20.55306 -18.64143 -18.00022 -16.37022 -16.04532 -15.94177 -15.30614 -14.72222 -14.40054 -14.11142 -13.70967 -13.48350 -13.24665 -12.89394 -12.64294 -12.31287 -11.74292 -11.67049 -11.36648 -11.33430 -11.27128 -10.90876 -10.74938 -10.56577 -10.46364 -10.43965 -9.63869 -9.40575 -9.19373 -8.47310 -8.39648 -7.52126 -6.08423 -4.12810 1.64108 1.86772 2.06070 2.57033 3.20437 3.27345 3.35342 3.40329 4.15527 4.43784 4.58406 4.92086 5.08388 5.15558 5.16562 5.23921 5.26920 5.41353 5.42551 5.68445 5.77577 5.85651 5.90775 5.94621 6.19737 6.45751 6.56877 6.65150 6.82478 6.98096 7.17848 7.46873 7.61094 7.71183 7.87124 8.25603 8.92609 9.51667 11.01122 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.004295 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.333249 B = 6517.331560 C = 7012.644844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.147 4.147 3 C -0.112 4.112 4 C 0.097 3.903 5 O -0.307 6.307 6 C 0.106 3.894 7 C -0.197 4.197 8 C -0.081 4.081 9 C -0.054 4.054 10 C 0.051 3.949 11 C -0.514 4.514 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.079 4.079 20 C -0.062 4.062 21 Cl -0.078 7.078 22 H 0.097 0.903 23 H 0.112 0.888 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 18.089 2.464 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.169 4.169 4 C 0.022 3.978 5 O -0.221 6.221 6 C 0.061 3.939 7 C -0.216 4.216 8 C -0.099 4.099 9 C -0.055 4.055 10 C 0.014 3.986 11 C -0.552 4.552 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.097 4.097 20 C -0.089 4.089 21 Cl -0.049 7.049 22 H 0.115 0.885 23 H 0.130 0.870 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.899 18.006 2.503 18.827 hybrid contribution 0.280 -0.362 -0.995 1.095 sum -4.619 17.643 1.508 18.300 Atomic orbital electron populations 1.23817 0.95394 1.02452 0.98805 1.21530 0.95962 0.93909 1.03280 1.20758 1.00302 0.93499 1.02296 1.21409 0.91126 0.83681 1.01614 1.86028 1.34961 1.11727 1.89399 1.18412 0.91370 0.83331 1.00805 1.21100 0.92564 0.98751 1.09168 1.21024 1.00433 0.90923 0.97546 1.20612 0.91793 0.98544 0.94522 1.18335 0.96423 0.85890 0.97914 1.21106 1.42290 1.00382 0.91437 0.92346 1.25009 0.95354 0.96620 0.97286 1.69964 1.43242 1.09317 1.30655 0.86483 0.77818 0.78748 0.84705 1.19639 1.20931 1.20878 1.20906 0.95823 0.93995 0.98995 1.20146 0.83597 0.92737 1.12405 1.98314 1.11756 1.97551 1.97320 0.88507 0.86975 0.91485 0.91472 0.91512 0.91204 0.91172 0.85560 0.85403 0.95079 0.95038 0.92831 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 13.68 29.02 0.40 -1.40 16 2 C -0.15 -1.51 6.05 -101.07 -0.61 -2.12 16 3 C -0.11 -0.83 10.12 36.00 0.36 -0.47 16 4 C 0.10 1.13 5.16 36.01 0.19 1.31 16 5 O -0.31 -4.62 7.99 -19.52 -0.16 -4.78 16 6 C 0.11 1.78 6.68 -39.20 -0.26 1.52 16 7 C -0.20 -3.15 9.04 -39.44 -0.36 -3.51 16 8 C -0.08 -1.49 9.69 -39.60 -0.38 -1.87 16 9 C -0.05 -1.13 5.07 -104.61 -0.53 -1.66 16 10 C 0.05 1.27 5.10 -29.03 -0.15 1.12 16 11 C -0.51 -14.04 9.09 -34.44 -0.31 -14.35 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.08 -1.53 9.48 -39.57 -0.38 -1.91 16 20 C -0.06 -1.11 6.33 -39.36 -0.25 -1.36 16 21 Cl -0.08 -1.27 28.50 -51.86 -1.48 -2.75 16 22 H 0.10 0.83 7.83 -52.48 -0.41 0.42 16 23 H 0.11 1.40 6.84 -52.49 -0.36 1.04 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.43 7.78 -51.93 -0.40 0.03 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 28 H 0.07 0.76 7.66 -51.93 -0.40 0.36 16 29 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 30 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -29.12 310.30 -7.99 -37.11 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.37 Total: -2.18 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -2.38 Total: -23.16 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.74 Total: -25.13 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.16 Total: -4.78 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.48 Total: -2.75 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.12 -7.99 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260302064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.301 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds