Wall clock time and date at job start Mon Mar 30 2020 07:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50690 * 120.00573 * 2 1 4 4 C 1.50706 * 119.99421 * 179.97438 * 2 1 3 5 5 O 1.42898 * 109.47235 * 0.02562 * 4 2 1 6 6 C 1.35930 * 117.00243 * 179.97438 * 5 4 2 7 7 C 1.38708 * 120.05420 * 0.02562 * 6 5 4 8 8 C 1.38152 * 119.95271 * 179.70290 * 7 6 5 9 9 C 1.38279 * 120.07551 * 0.54926 * 8 7 6 10 10 C 1.50700 * 119.93762 * 179.72726 * 9 8 7 11 11 C 1.50702 * 109.46869 * 269.72106 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.38242 * 120.12179 * 359.44706 * 9 8 7 20 20 C 1.38258 * 120.03943 * 0.27505 * 19 9 8 21 21 Cl 1.73600 * 120.03913 * 180.02562 * 20 19 9 22 22 H 1.08007 * 119.99813 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.00678 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47453 * 240.00183 * 3 2 1 25 25 H 1.08999 * 109.47109 * 0.02562 * 3 2 1 26 26 H 1.09006 * 109.47224 * 119.99927 * 3 2 1 27 27 H 1.09000 * 109.47050 * 239.99739 * 4 2 1 28 28 H 1.09003 * 109.46965 * 120.00208 * 4 2 1 29 29 H 1.08002 * 120.02430 * 359.97438 * 7 6 5 30 30 H 1.08000 * 119.96120 * 180.26893 * 8 7 6 31 31 H 1.09004 * 109.47210 * 149.72400 * 10 9 8 32 32 H 1.08994 * 109.47551 * 29.72052 * 10 9 8 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.07998 * 119.97890 * 180.25559 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3049 0.0000 4 6 2.0634 -1.3052 0.0006 5 8 1.1347 -2.3913 0.0005 6 6 1.6541 -3.6474 0.0004 7 6 3.0290 -3.8307 0.0010 8 6 3.5546 -5.1083 0.0071 9 6 2.7117 -6.2044 0.0012 10 6 3.2885 -7.5967 0.0017 11 6 3.4812 -8.0610 -1.4189 12 1 3.2133 -7.4126 -2.2401 13 6 4.0055 -9.3113 -1.6705 14 7 4.3321 -10.1006 -0.6706 15 14 4.2515 -9.8838 -3.4314 16 1 3.8091 -8.8172 -4.3651 17 1 5.6894 -10.1765 -3.6604 18 1 3.4524 -11.1127 -3.6687 19 6 1.3409 -6.0255 0.0007 20 6 0.8096 -4.7491 0.0003 21 17 -0.9118 -4.5243 0.0003 22 1 -0.5400 0.9354 0.0004 23 1 -0.5401 -0.9352 -0.0004 24 1 2.6902 1.3627 -0.8900 25 1 1.3553 2.1335 0.0005 26 1 2.6902 1.3626 0.8900 27 1 2.6900 -1.3626 0.8906 28 1 2.6900 -1.3634 -0.8894 29 1 3.6882 -2.9751 0.0011 30 1 4.6251 -5.2510 0.0120 31 1 2.6051 -8.2729 0.5154 32 1 4.2495 -7.5917 0.5159 33 1 4.7005 -10.9803 -0.8475 34 1 0.6847 -6.8832 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260302064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:36 Heat of formation + Delta-G solvation = -31.937476 kcal Electronic energy + Delta-G solvation = -17063.664656 eV Core-core repulsion = 14180.044950 eV Total energy + Delta-G solvation = -2883.619706 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.23282 -39.03512 -37.40209 -36.18572 -35.14785 -32.46895 -31.79635 -28.99045 -27.97000 -27.67328 -25.05277 -23.70920 -22.09906 -19.54904 -19.18722 -18.49333 -17.22415 -16.99640 -16.93250 -16.22825 -15.67900 -15.41868 -14.82609 -14.74355 -14.40693 -14.29234 -13.77077 -13.62565 -13.45749 -13.18297 -12.67717 -12.55891 -12.49341 -12.40676 -12.17050 -12.07770 -11.95563 -11.85425 -11.46293 -11.31672 -10.59980 -9.97449 -9.81273 -8.98834 -8.18587 -6.32130 0.21630 0.42753 1.19434 1.28093 1.40346 1.41865 1.54483 2.08521 2.39767 2.73964 3.12004 3.70150 3.88566 4.00203 4.19090 4.24328 4.34921 4.39025 4.42746 4.51778 4.71016 4.77612 4.87591 5.00822 5.16242 5.17407 5.25681 5.33703 5.35320 5.63856 5.68786 5.75200 5.90435 5.93497 6.17917 6.38633 6.80571 7.36601 8.89844 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.004295 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.333249 B = 6517.331560 C = 7012.644844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C -0.109 4.109 4 C 0.083 3.917 5 O -0.313 6.313 6 C 0.116 3.884 7 C -0.183 4.183 8 C -0.082 4.082 9 C -0.083 4.083 10 C 0.061 3.939 11 C -0.528 4.528 12 H 0.055 0.945 13 C 0.007 3.993 14 N -0.928 5.928 15 Si 0.962 3.038 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.278 1.278 19 C -0.086 4.086 20 C -0.073 4.073 21 Cl -0.066 7.066 22 H 0.116 0.884 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.136 0.864 31 H 0.005 0.995 32 H 0.013 0.987 33 H 0.265 0.735 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 20.543 1.584 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.146 4.146 3 C -0.166 4.166 4 C 0.009 3.991 5 O -0.228 6.228 6 C 0.070 3.930 7 C -0.202 4.202 8 C -0.100 4.100 9 C -0.084 4.084 10 C 0.024 3.976 11 C -0.566 4.566 12 H 0.073 0.927 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.787 3.213 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.204 1.204 19 C -0.105 4.105 20 C -0.101 4.101 21 Cl -0.037 7.037 22 H 0.134 0.866 23 H 0.107 0.893 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.184 0.816 30 H 0.154 0.846 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.467 20.481 1.626 21.025 hybrid contribution 0.088 -0.997 -0.672 1.206 sum -4.379 19.483 0.954 19.992 Atomic orbital electron populations 1.23848 0.95811 1.02357 0.99994 1.21783 0.95974 0.94463 1.02357 1.20806 1.00525 0.91994 1.03267 1.21805 0.91241 0.83035 1.03053 1.86060 1.36296 1.11576 1.88821 1.18514 0.91513 0.83944 0.98996 1.21385 0.92715 0.98856 1.07215 1.21118 1.00588 0.91187 0.97136 1.20276 0.92771 0.97225 0.98080 1.18058 0.95015 0.88169 0.96375 1.21421 1.42038 1.00644 0.92501 0.92719 1.25873 0.95032 0.96759 1.01507 1.70076 1.44111 1.09782 1.32859 0.85435 0.78014 0.78251 0.79596 1.19049 1.20078 1.20404 1.20783 0.95283 0.94730 0.99687 1.20171 0.84602 0.92635 1.12654 1.98312 1.10656 1.97448 1.97267 0.86598 0.89288 0.90516 0.90441 0.90403 0.89522 0.89811 0.81645 0.84616 0.97684 0.96916 0.92573 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.57 13.68 67.78 0.93 -2.64 16 2 C -0.15 -2.58 6.05 -16.49 -0.10 -2.68 16 3 C -0.11 -1.23 10.12 71.23 0.72 -0.51 16 4 C 0.08 1.65 5.16 71.24 0.37 2.02 16 5 O -0.31 -8.74 7.99 -92.76 -0.74 -9.48 16 6 C 0.12 3.69 6.68 22.52 0.15 3.84 16 7 C -0.18 -5.40 9.04 22.36 0.20 -5.20 16 8 C -0.08 -2.95 9.69 22.26 0.22 -2.73 16 9 C -0.08 -3.55 5.07 -19.85 -0.10 -3.65 16 10 C 0.06 3.15 5.10 29.10 0.15 3.30 16 11 C -0.53 -29.52 9.09 25.60 0.23 -29.28 16 12 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 13 C 0.01 0.37 5.46 84.66 0.46 0.84 16 14 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 15 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 C -0.09 -3.43 9.48 22.28 0.21 -3.22 16 20 C -0.07 -2.61 6.33 22.41 0.14 -2.46 16 21 Cl -0.07 -2.10 28.50 -2.72 -0.08 -2.18 16 22 H 0.12 1.74 7.83 -2.91 -0.02 1.72 16 23 H 0.09 2.15 6.84 -2.91 -0.02 2.13 16 24 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.08 0.73 7.78 -2.39 -0.02 0.71 16 26 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.09 1.47 7.66 -2.39 -0.02 1.46 16 28 H 0.08 1.48 7.66 -2.39 -0.02 1.46 16 29 H 0.17 3.52 6.30 -2.91 -0.02 3.50 16 30 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.00 0.27 8.08 -2.38 -0.02 0.25 16 32 H 0.01 0.68 8.08 -2.39 -0.02 0.66 16 33 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 34 H 0.13 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -63.26 310.30 6.16 -57.10 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.09 Total: 5.82 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 3.58 Total: -42.37 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.28 Total: -54.69 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.74 Total: -9.48 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -63.26 6.16 -57.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260302064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.166 kcal (2) G-P(sol) polarization free energy of solvation -63.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds