Wall clock time and date at job start Mon Mar 30 2020 07:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00280 * 2 1 4 4 C 1.50698 * 109.47246 * 184.96431 * 3 2 1 5 5 C 1.38262 * 119.99414 * 4.61552 * 4 3 2 6 6 C 1.38221 * 120.02746 * 180.02562 * 5 4 3 7 7 C 1.38239 * 120.01310 * 359.94974 * 6 5 4 8 8 C 1.38332 * 119.98306 * 359.77193 * 7 6 5 9 9 Cl 1.73600 * 120.01193 * 180.26869 * 8 7 6 10 10 C 1.38191 * 119.99306 * 184.63619 * 4 3 2 11 11 C 1.50704 * 120.00437 * 359.97438 * 10 4 3 12 12 C 1.50699 * 115.54770 * 65.96846 * 11 10 4 13 13 H 1.07995 * 119.99514 * 208.34593 * 12 11 10 14 14 C 1.37877 * 120.00293 * 28.34538 * 12 11 10 15 15 N 1.31506 * 120.00340 * 193.49403 * 14 12 11 16 16 Si 1.86806 * 119.99846 * 13.77132 * 14 12 11 17 17 H 1.48497 * 109.46951 * 275.25991 * 16 14 12 18 18 H 1.48502 * 109.46991 * 35.26063 * 16 14 12 19 19 H 1.48498 * 109.47136 * 155.25904 * 16 14 12 20 20 C 1.53003 * 117.51709 * 211.66441 * 11 10 4 21 21 C 1.52993 * 117.49967 * 280.29302 * 11 10 4 22 22 H 1.08998 * 109.47553 * 184.96373 * 1 2 3 23 23 H 1.08997 * 109.47278 * 304.97367 * 1 2 3 24 24 H 1.09010 * 109.46824 * 64.96873 * 1 2 3 25 25 H 1.08997 * 109.46556 * 64.96741 * 3 2 1 26 26 H 1.08993 * 109.46916 * 304.96917 * 3 2 1 27 27 H 1.08004 * 119.98564 * 0.02562 * 5 4 3 28 28 H 1.08004 * 119.99557 * 179.97438 * 6 5 4 29 29 H 1.07994 * 120.00549 * 179.97438 * 7 6 5 30 30 H 0.96994 * 120.00382 * 185.27433 * 15 14 12 31 31 H 1.08990 * 117.49899 * 214.97458 * 20 11 10 32 32 H 1.09003 * 117.49920 * 359.97438 * 20 11 10 33 33 H 1.09003 * 117.50406 * 359.97438 * 21 11 10 34 34 H 1.09000 * 117.49970 * 144.99612 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5077 1.1886 -0.1229 5 6 4.0912 -0.0508 -0.3098 6 6 5.4646 -0.1589 -0.4221 7 6 6.2555 0.9725 -0.3487 8 6 5.6718 2.2135 -0.1676 9 17 6.6638 3.6356 -0.0824 10 6 4.2973 2.3202 -0.0485 11 6 3.6611 3.6711 0.1550 12 6 2.9757 3.8735 1.4818 13 1 2.1444 4.5582 1.5611 14 6 3.4099 3.1844 2.5943 15 7 2.6657 3.1493 3.6780 16 14 5.0588 2.3070 2.5648 17 1 4.8917 0.9593 1.9641 18 1 6.0236 3.0937 1.7551 19 1 5.5719 2.1707 3.9516 20 6 4.3550 4.8813 -0.4735 21 6 3.0476 4.3546 -1.0686 22 1 -0.3634 -1.0238 0.0889 23 1 -0.3634 0.5890 0.8420 24 1 -0.3633 0.4349 -0.9312 25 1 1.7608 1.8142 0.9311 26 1 1.6200 1.8769 -0.8421 27 1 3.4736 -0.9350 -0.3680 28 1 5.9199 -1.1274 -0.5676 29 1 7.3286 0.8879 -0.4361 30 1 3.0035 2.7304 4.4849 31 1 4.3158 5.8237 0.0726 32 1 5.2723 4.7005 -1.0340 33 1 3.1045 3.8275 -2.0210 34 1 2.1482 4.9507 -0.9140 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260305832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:46 Heat of formation + Delta-G solvation = 6.123183 kcal Electronic energy + Delta-G solvation = -18981.798355 eV Core-core repulsion = 16099.829083 eV Total energy + Delta-G solvation = -2881.969272 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27768 -38.65984 -37.77336 -37.38564 -34.34561 -32.80379 -31.50860 -28.23840 -27.91364 -26.37560 -23.95377 -23.25467 -22.30563 -20.97950 -18.99697 -17.62127 -17.34794 -17.27682 -16.68388 -16.19667 -15.89471 -15.68451 -15.42430 -15.05827 -14.65210 -14.17526 -14.11295 -13.65059 -13.16599 -12.98236 -12.76560 -12.46760 -12.25155 -12.17689 -11.91574 -11.62588 -11.39383 -11.22341 -10.75312 -10.65272 -10.37439 -10.07794 -9.54410 -9.43229 -8.30666 -6.28374 0.22430 0.30777 1.17833 1.43315 1.50873 1.57476 2.47668 2.66454 2.82016 2.89054 3.54862 3.81581 3.91073 4.10535 4.33013 4.37037 4.39297 4.45974 4.54080 4.61937 4.70884 4.73900 4.80927 4.82233 4.90858 5.01315 5.07111 5.25071 5.29782 5.42906 5.52546 5.65327 5.68189 5.91973 6.24963 6.28949 6.67812 7.33822 8.78831 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.011613 C = 0.010139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.507018 B = 2410.441507 C = 2761.016769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.112 3.888 4 C -0.073 4.073 5 C -0.104 4.104 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.054 4.054 9 Cl -0.045 7.045 10 C -0.042 4.042 11 C 0.019 3.981 12 C -0.473 4.473 13 H 0.039 0.961 14 C 0.046 3.954 15 N -0.937 5.937 16 Si 0.832 3.168 17 H -0.251 1.251 18 H -0.164 1.164 19 H -0.331 1.331 20 C -0.197 4.197 21 C -0.175 4.175 22 H 0.109 0.891 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.144 0.856 28 H 0.168 0.832 29 H 0.160 0.840 30 H 0.260 0.740 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -6.813 -11.472 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.036 3.964 4 C -0.074 4.074 5 C -0.122 4.122 6 C -0.129 4.129 7 C -0.137 4.137 8 C -0.080 4.080 9 Cl -0.016 7.016 10 C -0.043 4.043 11 C 0.018 3.982 12 C -0.510 4.510 13 H 0.057 0.943 14 C -0.153 4.153 15 N -0.576 5.576 16 Si 0.660 3.340 17 H -0.175 1.175 18 H -0.086 1.086 19 H -0.262 1.262 20 C -0.235 4.235 21 C -0.213 4.213 22 H 0.127 0.873 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.161 0.839 28 H 0.185 0.815 29 H 0.178 0.822 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.847 -6.957 -11.330 14.152 hybrid contribution -0.070 0.411 1.034 1.115 sum 4.777 -6.546 -10.296 13.103 Atomic orbital electron populations 1.22903 0.79502 1.03874 1.00506 1.87686 1.21435 1.27858 1.95682 1.21149 0.89813 0.84037 1.01407 1.19523 0.94832 0.93156 0.99859 1.21290 0.95773 0.97105 0.97985 1.21436 0.92803 0.99351 0.99313 1.21366 1.01864 0.89957 1.00495 1.20722 0.90813 0.89160 1.07331 1.98282 1.68807 1.39497 1.95045 1.18891 0.91544 0.95430 0.98400 1.17896 1.00315 0.87128 0.92855 1.20324 1.15544 1.23808 0.91323 0.94320 1.25494 0.99253 0.95519 0.95014 1.70068 1.37275 1.46556 1.03665 0.87904 0.85669 0.83542 0.76921 1.17536 1.08636 1.26212 1.23824 0.96037 0.98981 1.04618 1.22929 0.97261 1.04550 0.96512 0.87313 0.95011 0.92689 0.92340 0.91582 0.83863 0.81471 0.82236 0.93098 0.90786 0.87037 0.88900 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.41 -14.65 9.19 -148.98 -1.37 -16.02 16 3 C 0.11 4.54 5.30 71.24 0.38 4.92 16 4 C -0.07 -2.94 4.66 -19.87 -0.09 -3.03 16 5 C -0.10 -3.52 8.76 22.27 0.20 -3.32 16 6 C -0.11 -3.16 9.60 22.27 0.21 -2.95 16 7 C -0.12 -3.57 9.09 22.29 0.20 -3.37 16 8 C -0.05 -1.97 3.43 22.32 0.08 -1.89 16 9 Cl -0.05 -1.56 21.36 -2.72 -0.06 -1.62 16 10 C -0.04 -1.72 2.54 -19.84 -0.05 -1.77 16 11 C 0.02 0.85 0.84 -53.67 -0.05 0.80 16 12 C -0.47 -26.18 7.89 25.60 0.20 -25.98 16 13 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 14 C 0.05 2.68 5.06 84.66 0.43 3.11 16 15 N -0.94 -58.77 13.95 21.45 0.30 -58.48 16 16 Si 0.83 41.37 22.70 68.60 1.56 42.93 16 17 H -0.25 -11.96 4.68 99.48 0.47 -11.50 16 18 H -0.16 -7.19 3.04 99.48 0.30 -6.88 16 19 H -0.33 -17.83 7.11 99.48 0.71 -17.13 16 20 C -0.20 -7.89 8.26 30.59 0.25 -7.63 16 21 C -0.18 -6.83 9.80 30.59 0.30 -6.53 16 22 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.06 2.91 6.18 -2.39 -0.01 2.89 16 26 H 0.07 2.51 8.00 -2.39 -0.02 2.49 16 27 H 0.14 4.45 7.02 -2.91 -0.02 4.43 16 28 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 30 H 0.26 15.79 8.32 -92.71 -0.77 15.02 16 31 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.11 4.02 5.02 -2.39 -0.01 4.01 16 33 H 0.09 3.20 8.14 -2.39 -0.02 3.19 16 34 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -66.43 275.80 4.19 -62.25 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.45 Total: 16.55 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 3.31 Total: -45.62 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -1.37 Total: -16.02 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.56 Total: 42.93 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.06 Total: -1.62 kcal Total: -66.43 4.19 -62.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.369 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds