Wall clock time and date at job start Mon Mar 30 2020 06:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38389 * 119.98025 * 2 1 4 4 Cl 1.73599 * 119.95696 * 0.02562 * 3 2 1 5 5 C 1.38338 * 120.08307 * 180.25275 * 3 2 1 6 6 C 1.38164 * 120.04492 * 359.78563 * 5 3 2 7 7 C 1.38697 * 119.95637 * 359.97438 * 6 5 3 8 8 O 1.35926 * 120.04082 * 180.02562 * 7 6 5 9 9 C 1.38122 * 119.97790 * 179.78560 * 2 1 3 10 10 C 1.50705 * 120.02012 * 0.02562 * 9 2 1 11 11 H 1.09002 * 109.47131 * 354.02753 * 10 9 2 12 12 C 1.50702 * 109.46815 * 114.02663 * 10 9 2 13 13 H 1.07996 * 120.00459 * 359.97438 * 12 10 9 14 14 C 1.37876 * 119.99844 * 180.02562 * 12 10 9 15 15 N 1.31518 * 120.00128 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00216 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46839 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46801 * 119.99745 * 16 14 12 19 19 H 1.48499 * 109.47401 * 240.00199 * 16 14 12 20 20 C 1.53003 * 109.47122 * 234.02436 * 10 9 2 21 21 C 1.52998 * 117.49675 * 128.62439 * 20 10 9 22 22 C 1.53001 * 117.49699 * 60.00132 * 20 10 9 23 23 H 1.08993 * 109.47315 * 264.94532 * 1 2 3 24 24 H 1.08997 * 109.46640 * 24.94887 * 1 2 3 25 25 H 1.09007 * 109.46699 * 144.94218 * 1 2 3 26 26 H 1.08000 * 119.97854 * 179.76845 * 5 3 2 27 27 H 1.07997 * 120.02106 * 179.97438 * 6 5 3 28 28 H 0.96699 * 114.00409 * 269.97533 * 8 7 6 29 29 H 0.97001 * 120.00235 * 180.02562 * 15 14 12 30 30 H 1.08998 * 115.54495 * 274.33150 * 20 10 9 31 31 H 1.08996 * 117.50130 * 0.02562 * 21 20 10 32 32 H 1.09004 * 117.49481 * 145.02324 * 21 20 10 33 33 H 1.08998 * 117.49412 * 214.97904 * 22 20 10 34 34 H 1.08994 * 117.49753 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1987 0.0000 4 17 1.3290 2.7012 0.0007 5 6 3.5820 1.2012 -0.0053 6 6 4.2759 0.0065 -0.0061 7 6 3.5846 -1.1960 -0.0011 8 8 4.2655 -2.3723 -0.0013 9 6 2.1972 -1.1964 0.0045 10 6 1.4437 -2.5015 0.0088 11 1 0.3768 -2.3047 0.1146 12 6 1.6940 -3.2303 -1.2863 13 1 2.3343 -2.7922 -2.0375 14 6 1.1047 -4.4561 -1.5126 15 7 0.3245 -4.9896 -0.5980 16 14 1.4144 -5.3593 -3.1182 17 1 2.3220 -4.5524 -3.9729 18 1 2.0428 -6.6743 -2.8331 19 1 0.1252 -5.5694 -3.8247 20 6 1.9220 -3.3628 1.1794 21 6 0.8566 -3.9388 2.1143 22 6 1.7538 -2.7942 2.5898 23 1 -0.3633 -0.0905 1.0236 24 1 -0.3632 0.9318 -0.4335 25 1 -0.3633 -0.8413 -0.5903 26 1 4.1199 2.1377 -0.0091 27 1 5.3558 0.0089 -0.0106 28 1 4.4589 -2.7147 -0.8848 29 1 -0.0898 -5.8521 -0.7571 30 1 2.8041 -3.9728 0.9845 31 1 -0.1851 -3.7045 1.8952 32 1 1.0377 -4.9280 2.5347 33 1 2.5250 -3.0305 3.3229 34 1 1.3027 -1.8064 2.6837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260320088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:38 Heat of formation + Delta-G solvation = -23.931248 kcal Electronic energy + Delta-G solvation = -18531.102575 eV Core-core repulsion = 15647.830045 eV Total energy + Delta-G solvation = -2883.272530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05318 -38.18109 -37.83080 -36.80372 -34.68400 -33.67904 -31.48410 -28.89953 -27.69169 -25.33254 -23.07370 -22.88291 -22.08775 -20.71309 -18.93515 -18.24475 -17.31811 -16.96805 -16.43768 -15.95814 -15.76432 -14.97847 -14.60453 -14.43162 -14.19030 -13.83663 -13.74487 -13.25396 -13.01081 -12.85424 -12.81278 -12.45735 -12.19846 -12.05746 -11.98941 -11.77431 -11.57855 -11.49105 -11.16762 -10.59659 -10.44694 -10.08764 -9.43492 -9.15693 -7.98937 -6.11244 0.26554 0.47659 1.25055 1.43339 1.48097 1.55444 2.47168 2.69911 3.27700 3.43374 3.58220 3.95695 4.01003 4.26797 4.36359 4.48869 4.56877 4.63010 4.72364 4.76902 4.81771 4.91757 5.09706 5.22812 5.25502 5.28589 5.36996 5.48651 5.51944 5.57870 5.72676 5.88124 5.90874 6.12682 6.40422 6.94011 7.06604 7.54080 9.05004 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.007147 C = 0.006931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.029411 B = 3916.691218 C = 4038.681677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.053 4.053 4 Cl -0.069 7.069 5 C -0.107 4.107 6 C -0.144 4.144 7 C 0.113 3.887 8 O -0.494 6.494 9 C -0.072 4.072 10 C 0.114 3.886 11 H 0.019 0.981 12 C -0.516 4.516 13 H 0.050 0.950 14 C 0.027 3.973 15 N -0.895 5.895 16 Si 0.943 3.057 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.289 1.289 20 C -0.075 4.075 21 C -0.147 4.147 22 C -0.200 4.200 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.158 0.842 27 H 0.155 0.845 28 H 0.396 0.604 29 H 0.256 0.744 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 10.410 1.312 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.080 4.080 4 Cl -0.040 7.040 5 C -0.126 4.126 6 C -0.162 4.162 7 C 0.068 3.932 8 O -0.306 6.306 9 C -0.073 4.073 10 C 0.096 3.904 11 H 0.037 0.963 12 C -0.554 4.554 13 H 0.068 0.932 14 C -0.174 4.174 15 N -0.533 5.533 16 Si 0.770 3.230 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.216 1.216 20 C -0.094 4.094 21 C -0.184 4.184 22 C -0.237 4.237 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.176 0.824 27 H 0.173 0.827 28 H 0.254 0.746 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.709 10.442 1.951 11.619 hybrid contribution -0.221 -0.984 -1.297 1.643 sum 4.488 9.458 0.654 10.489 Atomic orbital electron populations 1.20811 0.90544 1.02985 1.02467 1.19666 0.97088 0.90885 1.00999 1.20808 0.92805 0.86048 1.08302 1.98309 1.77082 1.31530 1.97094 1.20990 0.91228 0.99292 1.01058 1.21518 1.01360 0.90618 1.02709 1.18504 0.89324 0.86080 0.99325 1.84711 1.75388 1.36334 1.34124 1.20631 0.94102 0.95628 0.96939 1.17307 0.93246 0.86915 0.92974 0.96266 1.21095 1.29641 1.03611 1.01083 0.93188 1.25543 0.95090 0.98096 0.98697 1.70143 1.31268 1.17515 1.34353 0.85744 0.77580 0.78625 0.81022 1.19170 1.21221 1.21576 1.21932 0.98214 1.00331 0.88949 1.22373 0.95920 0.95666 1.04478 1.22978 1.03504 0.97448 0.99807 0.91075 0.90136 0.92087 0.82449 0.82731 0.74629 0.93449 0.91087 0.91314 0.91116 0.89583 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.88 8.84 71.24 0.63 -3.25 16 2 C -0.09 -3.13 5.88 -19.85 -0.12 -3.25 16 3 C -0.05 -1.66 6.31 22.33 0.14 -1.52 16 4 Cl -0.07 -1.84 27.20 -2.72 -0.07 -1.91 16 5 C -0.11 -2.95 9.82 22.28 0.22 -2.73 16 6 C -0.14 -4.22 9.99 22.36 0.22 -3.99 16 7 C 0.11 4.11 6.31 22.50 0.14 4.26 16 8 O -0.49 -18.09 10.78 -92.71 -1.00 -19.09 16 9 C -0.07 -2.93 4.39 -19.77 -0.09 -3.02 16 10 C 0.11 5.34 1.73 -12.28 -0.02 5.32 16 11 H 0.02 1.00 5.47 -2.39 -0.01 0.98 16 12 C -0.52 -26.06 7.66 25.60 0.20 -25.87 16 13 H 0.05 2.49 7.73 -2.91 -0.02 2.46 16 14 C 0.03 1.38 5.30 84.65 0.45 1.83 16 15 N -0.90 -48.48 11.44 21.45 0.25 -48.24 16 16 Si 0.94 41.56 29.54 68.60 2.03 43.59 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 20 C -0.08 -3.48 3.12 -10.79 -0.03 -3.52 16 21 C -0.15 -6.57 9.05 30.59 0.28 -6.29 16 22 C -0.20 -8.11 9.87 30.60 0.30 -7.81 16 23 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.08 2.44 6.69 -2.39 -0.02 2.42 16 25 H 0.06 2.40 6.52 -2.38 -0.02 2.39 16 26 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 27 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 28 H 0.40 12.54 8.92 -74.06 -0.66 11.88 16 29 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 30 H 0.07 3.55 7.24 -2.39 -0.02 3.53 16 31 H 0.07 3.24 8.05 -2.39 -0.02 3.23 16 32 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 33 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -56.14 296.14 3.98 -52.16 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.46 Total: 23.33 kcal Atomic # 6 Polarization: -52.16 SS G_CDS: 2.32 Total: -49.84 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.25 Total: -48.24 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.00 Total: -19.09 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal Total: -56.14 3.98 -52.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.232 kcal (2) G-P(sol) polarization free energy of solvation -56.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds