Wall clock time and date at job start Mon Mar 30 2020 07:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99779 * 2 1 4 4 C 1.50701 * 109.47002 * 180.02562 * 3 2 1 5 5 C 1.38227 * 119.99462 * 358.74646 * 4 3 2 6 6 C 1.38330 * 119.98679 * 180.02562 * 5 4 3 7 7 Cl 1.73601 * 120.01488 * 179.97438 * 6 5 4 8 8 C 1.38371 * 119.97644 * 0.02562 * 6 5 4 9 9 C 1.38197 * 119.98164 * 359.72536 * 8 6 5 10 10 C 1.38227 * 119.99081 * 178.76845 * 4 3 2 11 11 C 1.50696 * 119.98589 * 359.97438 * 10 4 3 12 12 C 1.50699 * 115.55632 * 65.88771 * 11 10 4 13 13 H 1.07999 * 119.99642 * 264.57043 * 12 11 10 14 14 C 1.37874 * 119.99941 * 84.56116 * 12 11 10 15 15 N 1.31509 * 120.00306 * 353.06570 * 14 12 11 16 16 Si 1.86806 * 119.99770 * 172.78587 * 14 12 11 17 17 H 1.48499 * 109.47024 * 90.00494 * 16 14 12 18 18 H 1.48499 * 109.47079 * 210.00684 * 16 14 12 19 19 H 1.48497 * 109.47161 * 330.00551 * 16 14 12 20 20 C 1.53004 * 117.49418 * 211.55695 * 11 10 4 21 21 C 1.53002 * 117.49678 * 280.21579 * 11 10 4 22 22 H 1.08999 * 109.46661 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47152 * 299.99810 * 1 2 3 24 24 H 1.09004 * 109.47018 * 60.00050 * 1 2 3 25 25 H 1.08998 * 109.47242 * 59.99998 * 3 2 1 26 26 H 1.09000 * 109.47028 * 300.00072 * 3 2 1 27 27 H 1.08002 * 120.00807 * 0.04853 * 5 4 3 28 28 H 1.07998 * 120.01112 * 179.97438 * 8 6 5 29 29 H 1.08006 * 119.99401 * 180.27723 * 9 8 6 30 30 H 0.97003 * 119.99630 * 3.29576 * 15 14 12 31 31 H 1.09006 * 117.49463 * 214.99909 * 20 11 10 32 32 H 1.08998 * 117.50357 * 0.02562 * 20 11 10 33 33 H 1.08998 * 117.50167 * 359.97438 * 21 11 10 34 34 H 1.08997 * 117.50186 * 145.00120 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1069 -0.0611 0.0251 6 6 5.4859 -0.1701 0.0250 7 17 6.2332 -1.7367 0.0580 8 6 6.2696 0.9700 -0.0002 9 6 5.6741 2.2167 -0.0311 10 6 4.2958 2.3252 -0.0265 11 6 3.6471 3.6851 -0.0546 12 6 2.8681 4.0594 1.1799 13 1 1.8008 3.8976 1.2146 14 6 3.5179 4.6082 2.2651 15 7 4.8310 4.6796 2.2782 16 14 2.5327 5.2575 3.7133 17 1 2.3284 4.1679 4.7013 18 1 3.2722 6.3745 4.3541 19 1 1.2143 5.7463 3.2358 20 6 4.3857 4.8049 -0.7904 21 6 3.1234 4.1903 -1.4005 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.4948 -0.9507 0.0448 28 1 7.3462 0.8856 0.0001 29 1 6.2856 3.1067 -0.0554 30 1 5.3401 4.3903 1.5049 31 1 4.3081 5.8124 -0.3815 32 1 5.3405 4.5580 -1.2545 33 1 3.2485 3.5392 -2.2657 34 1 2.2155 4.7933 -1.3931 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260323015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:50 Heat of formation + Delta-G solvation = -15.683424 kcal Electronic energy + Delta-G solvation = -18226.046161 eV Core-core repulsion = 15343.131284 eV Total energy + Delta-G solvation = -2882.914877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.42754 -37.25614 -36.64414 -35.57978 -32.01462 -31.48302 -29.74174 -26.95777 -25.46066 -24.87720 -22.49294 -21.62619 -20.72977 -19.49595 -17.18525 -16.37645 -15.97567 -15.44902 -14.80029 -14.37015 -14.31244 -13.84143 -13.75754 -13.24397 -12.93288 -12.51602 -12.33861 -12.16741 -11.86430 -11.11467 -11.05729 -10.93100 -10.80069 -10.67726 -10.52365 -10.31687 -10.20362 -9.77358 -9.44100 -9.00010 -8.58449 -8.48524 -8.21939 -7.66859 -6.47113 -4.23637 1.80969 1.90747 2.58617 3.36325 3.38505 3.53500 4.08280 4.23246 4.40487 4.92835 5.19956 5.31524 5.45956 5.52003 5.55635 5.61027 5.79002 5.85238 5.92512 6.01183 6.06903 6.20935 6.27086 6.33824 6.45356 6.50651 6.62816 6.75520 6.76465 7.10450 7.12318 7.31324 7.49703 7.57972 8.05993 8.25122 8.73558 9.51555 10.92222 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.007655 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.404011 B = 3656.827650 C = 4295.717525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.398 6.398 3 C 0.109 3.891 4 C -0.068 4.068 5 C -0.094 4.094 6 C -0.057 4.057 7 Cl -0.096 7.096 8 C -0.113 4.113 9 C -0.109 4.109 10 C 0.001 3.999 11 C 0.047 3.953 12 C -0.572 4.572 13 H 0.057 0.943 14 C 0.032 3.968 15 N -0.894 5.894 16 Si 1.066 2.934 17 H -0.287 1.287 18 H -0.283 1.283 19 H -0.287 1.287 20 C -0.178 4.178 21 C -0.187 4.187 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.279 0.721 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.769 -6.632 -5.135 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.317 6.317 3 C 0.034 3.966 4 C -0.069 4.069 5 C -0.113 4.113 6 C -0.083 4.083 7 Cl -0.067 7.067 8 C -0.132 4.132 9 C -0.128 4.128 10 C 0.000 4.000 11 C 0.046 3.954 12 C -0.608 4.608 13 H 0.075 0.925 14 C -0.176 4.176 15 N -0.527 5.527 16 Si 0.894 3.106 17 H -0.213 1.213 18 H -0.208 1.208 19 H -0.213 1.213 20 C -0.215 4.215 21 C -0.224 4.224 22 H 0.099 0.901 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.151 0.849 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.430 -6.243 -3.623 7.616 hybrid contribution -0.141 -0.604 -1.456 1.582 sum -2.571 -6.847 -5.079 8.905 Atomic orbital electron populations 1.22651 0.81478 1.02022 1.00019 1.87770 1.19265 1.29033 1.95612 1.21352 0.89788 0.83285 1.02218 1.19279 0.94267 0.91976 1.01354 1.20723 0.91965 0.98321 1.00303 1.20678 0.93020 0.85175 1.09433 1.98306 1.82811 1.28226 1.97361 1.20907 0.99378 0.91203 1.01711 1.20936 0.94595 0.96403 1.00822 1.19755 0.92353 0.95200 0.92682 1.17935 0.98232 0.87069 0.92152 1.21177 0.94496 1.45791 0.99384 0.92477 1.25781 0.96908 0.94254 1.00673 1.70692 1.05830 1.43786 1.32414 0.83583 0.74763 0.76982 0.75292 1.21344 1.20816 1.21319 1.22861 0.93942 0.99683 1.05018 1.22933 0.98091 1.04501 0.96854 0.90149 0.94021 0.94377 0.89646 0.92179 0.84875 0.85951 0.85516 0.90973 0.89476 0.91143 0.91289 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 11.01 101.05 1.11 1.57 16 2 O -0.40 -6.86 9.18 -35.23 -0.32 -7.18 16 3 C 0.11 2.07 5.14 36.01 0.19 2.25 16 4 C -0.07 -1.41 5.86 -104.63 -0.61 -2.02 16 5 C -0.09 -1.81 9.16 -39.55 -0.36 -2.18 16 6 C -0.06 -1.04 6.32 -39.50 -0.25 -1.29 16 7 Cl -0.10 -1.51 28.96 -51.86 -1.50 -3.02 16 8 C -0.11 -2.09 9.83 -39.55 -0.39 -2.48 16 9 C -0.11 -2.23 8.55 -39.59 -0.34 -2.57 16 10 C 0.00 0.02 5.03 -104.62 -0.53 -0.51 16 11 C 0.05 1.06 0.40 -156.81 -0.06 0.99 16 12 C -0.57 -14.49 7.47 -34.44 -0.26 -14.74 16 13 H 0.06 1.44 7.10 -52.49 -0.37 1.06 16 14 C 0.03 0.83 5.39 -17.82 -0.10 0.74 16 15 N -0.89 -24.99 13.56 55.43 0.75 -24.24 16 16 Si 1.07 23.78 29.91 -169.99 -5.08 18.70 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 20 C -0.18 -3.81 8.26 -26.69 -0.22 -4.03 16 21 C -0.19 -3.76 9.49 -26.69 -0.25 -4.01 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 1.76 6.38 -51.93 -0.33 1.43 16 26 H 0.06 1.10 7.67 -51.93 -0.40 0.70 16 27 H 0.13 2.43 7.01 -52.49 -0.37 2.06 16 28 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.13 2.55 6.60 -52.48 -0.35 2.20 16 30 H 0.28 7.59 5.39 -40.82 -0.22 7.37 16 31 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 32 H 0.07 1.39 7.14 -51.93 -0.37 1.02 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 299.04 15.07 4.51 4.51 Total: -1.00 -27.52 299.04 -7.88 -35.40 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.16 Total: 4.11 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -2.07 Total: -28.27 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.75 Total: -24.24 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.32 Total: -7.18 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.08 Total: 18.70 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -1.50 Total: -3.02 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.52 -7.88 -35.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.718 kcal (2) G-P(sol) polarization free energy of solvation -27.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds