Wall clock time and date at job start Mon Mar 30 2020 07:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99779 * 2 1 4 4 C 1.50701 * 109.47002 * 180.02562 * 3 2 1 5 5 C 1.38227 * 119.99462 * 358.74646 * 4 3 2 6 6 C 1.38330 * 119.98679 * 180.02562 * 5 4 3 7 7 Cl 1.73601 * 120.01488 * 179.97438 * 6 5 4 8 8 C 1.38371 * 119.97644 * 0.02562 * 6 5 4 9 9 C 1.38197 * 119.98164 * 359.72536 * 8 6 5 10 10 C 1.38227 * 119.99081 * 178.76845 * 4 3 2 11 11 C 1.50696 * 119.98589 * 359.97438 * 10 4 3 12 12 C 1.50699 * 115.55632 * 65.88771 * 11 10 4 13 13 H 1.07999 * 119.99642 * 264.57043 * 12 11 10 14 14 C 1.37874 * 119.99941 * 84.56116 * 12 11 10 15 15 N 1.31509 * 120.00306 * 353.06570 * 14 12 11 16 16 Si 1.86806 * 119.99770 * 172.78587 * 14 12 11 17 17 H 1.48499 * 109.47024 * 90.00494 * 16 14 12 18 18 H 1.48499 * 109.47079 * 210.00684 * 16 14 12 19 19 H 1.48497 * 109.47161 * 330.00551 * 16 14 12 20 20 C 1.53004 * 117.49418 * 211.55695 * 11 10 4 21 21 C 1.53002 * 117.49678 * 280.21579 * 11 10 4 22 22 H 1.08999 * 109.46661 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47152 * 299.99810 * 1 2 3 24 24 H 1.09004 * 109.47018 * 60.00050 * 1 2 3 25 25 H 1.08998 * 109.47242 * 59.99998 * 3 2 1 26 26 H 1.09000 * 109.47028 * 300.00072 * 3 2 1 27 27 H 1.08002 * 120.00807 * 0.04853 * 5 4 3 28 28 H 1.07998 * 120.01112 * 179.97438 * 8 6 5 29 29 H 1.08006 * 119.99401 * 180.27723 * 9 8 6 30 30 H 0.97003 * 119.99630 * 3.29576 * 15 14 12 31 31 H 1.09006 * 117.49463 * 214.99909 * 20 11 10 32 32 H 1.08998 * 117.50357 * 0.02562 * 20 11 10 33 33 H 1.08998 * 117.50167 * 359.97438 * 21 11 10 34 34 H 1.08997 * 117.50186 * 145.00120 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1069 -0.0611 0.0251 6 6 5.4859 -0.1701 0.0250 7 17 6.2332 -1.7367 0.0580 8 6 6.2696 0.9700 -0.0002 9 6 5.6741 2.2167 -0.0311 10 6 4.2958 2.3252 -0.0265 11 6 3.6471 3.6851 -0.0546 12 6 2.8681 4.0594 1.1799 13 1 1.8008 3.8976 1.2146 14 6 3.5179 4.6082 2.2651 15 7 4.8310 4.6796 2.2782 16 14 2.5327 5.2575 3.7133 17 1 2.3284 4.1679 4.7013 18 1 3.2722 6.3745 4.3541 19 1 1.2143 5.7463 3.2358 20 6 4.3857 4.8049 -0.7904 21 6 3.1234 4.1903 -1.4005 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.4948 -0.9507 0.0448 28 1 7.3462 0.8856 0.0001 29 1 6.2856 3.1067 -0.0554 30 1 5.3401 4.3903 1.5049 31 1 4.3081 5.8124 -0.3815 32 1 5.3405 4.5580 -1.2545 33 1 3.2485 3.5392 -2.2657 34 1 2.2155 4.7933 -1.3931 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:50 Heat of formation + Delta-G solvation = -28.620229 kcal Electronic energy + Delta-G solvation = -18226.607143 eV Core-core repulsion = 15343.131284 eV Total energy + Delta-G solvation = -2883.475859 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.96886 -38.59937 -38.18990 -37.04543 -33.95038 -32.94578 -31.27701 -28.20583 -27.29484 -26.29228 -24.12160 -23.24185 -22.29335 -21.21063 -18.94649 -17.85826 -17.37898 -16.76730 -16.37026 -15.86167 -15.67826 -15.61969 -15.31308 -14.82840 -14.44068 -14.34615 -13.79691 -13.50111 -13.32707 -12.69162 -12.57222 -12.48562 -12.25414 -12.20643 -12.08907 -11.93956 -11.73759 -11.44780 -10.77630 -10.73063 -10.44218 -10.30891 -9.74171 -9.24264 -8.48973 -6.25372 0.28746 0.37582 1.16668 1.55417 1.61821 1.78081 2.57620 2.68898 2.80824 3.21887 3.29691 3.85166 3.97294 4.00144 4.29473 4.34002 4.41015 4.44688 4.53847 4.61402 4.68925 4.73279 4.78703 4.82818 4.84168 4.91455 5.06966 5.11821 5.26066 5.43542 5.53773 5.77110 5.93112 6.15978 6.24636 6.28300 6.74428 7.55467 8.91404 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.007655 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.404011 B = 3656.827650 C = 4295.717525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.121 3.879 4 C -0.084 4.084 5 C -0.096 4.096 6 C -0.056 4.056 7 Cl -0.069 7.069 8 C -0.110 4.110 9 C -0.121 4.121 10 C -0.020 4.020 11 C 0.028 3.972 12 C -0.572 4.572 13 H 0.052 0.948 14 C -0.014 4.014 15 N -0.927 5.927 16 Si 1.103 2.897 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.270 1.270 20 C -0.179 4.179 21 C -0.166 4.166 22 H 0.107 0.893 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.123 0.877 30 H 0.273 0.727 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 -7.948 -5.661 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.045 3.955 4 C -0.084 4.084 5 C -0.115 4.115 6 C -0.083 4.083 7 Cl -0.041 7.041 8 C -0.129 4.129 9 C -0.139 4.139 10 C -0.021 4.021 11 C 0.027 3.973 12 C -0.610 4.610 13 H 0.070 0.930 14 C -0.216 4.216 15 N -0.563 5.563 16 Si 0.927 3.073 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.195 1.195 20 C -0.217 4.217 21 C -0.203 4.203 22 H 0.125 0.875 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.141 0.859 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.931 -7.571 -4.167 9.126 hybrid contribution -0.005 -0.313 -1.352 1.388 sum -2.936 -7.884 -5.519 10.062 Atomic orbital electron populations 1.22935 0.79299 1.04035 1.00702 1.87741 1.21621 1.27857 1.95667 1.21080 0.89205 0.84003 1.01201 1.19506 0.95137 0.92214 1.01579 1.20856 0.92538 0.98121 0.99964 1.20796 0.92934 0.86437 1.08127 1.98315 1.82298 1.26265 1.97177 1.21135 1.00688 0.90466 1.00605 1.21009 0.94317 0.97229 1.01392 1.19734 0.93048 0.94915 0.94362 1.17921 0.99127 0.87968 0.92247 1.21433 0.94536 1.44732 1.00271 0.93003 1.26856 0.97127 0.94532 1.03106 1.70769 1.06659 1.46110 1.32719 0.83096 0.74462 0.76481 0.73266 1.20854 1.21274 1.19466 1.22777 0.95267 0.98325 1.05293 1.22940 0.97394 1.03730 0.96277 0.87510 0.93886 0.93153 0.91887 0.91858 0.83979 0.83485 0.85940 0.91574 0.91528 0.89833 0.89381 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.41 -13.53 9.18 -148.98 -1.37 -14.90 16 3 C 0.12 4.52 5.14 71.24 0.37 4.89 16 4 C -0.08 -3.40 5.86 -19.87 -0.12 -3.52 16 5 C -0.10 -3.56 9.16 22.29 0.20 -3.36 16 6 C -0.06 -1.96 6.32 22.32 0.14 -1.82 16 7 Cl -0.07 -2.02 28.96 -2.72 -0.08 -2.10 16 8 C -0.11 -3.91 9.83 22.29 0.22 -3.69 16 9 C -0.12 -4.90 8.55 22.26 0.19 -4.71 16 10 C -0.02 -0.86 5.03 -19.86 -0.10 -0.96 16 11 C 0.03 1.26 0.40 -53.67 -0.02 1.24 16 12 C -0.57 -29.25 7.47 25.60 0.19 -29.06 16 13 H 0.05 2.63 7.10 -2.91 -0.02 2.61 16 14 C -0.01 -0.76 5.39 84.65 0.46 -0.31 16 15 N -0.93 -52.72 13.56 21.45 0.29 -52.43 16 16 Si 1.10 48.17 29.91 68.60 2.05 50.22 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 C -0.18 -7.71 8.26 30.62 0.25 -7.45 16 21 C -0.17 -6.56 9.49 30.62 0.29 -6.27 16 22 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.06 2.62 6.38 -2.39 -0.02 2.60 16 26 H 0.06 2.28 7.67 -2.39 -0.02 2.26 16 27 H 0.14 4.93 7.01 -2.91 -0.02 4.91 16 28 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.12 4.96 6.60 -2.91 -0.02 4.94 16 30 H 0.27 15.22 5.39 -92.71 -0.50 14.72 16 31 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 32 H 0.08 3.31 7.14 -2.39 -0.02 3.29 16 33 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -58.04 299.04 5.59 -52.45 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 1.37 Total: 19.89 kcal Atomic # 6 Polarization: -56.45 SS G_CDS: 3.32 Total: -53.13 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.29 Total: -52.43 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.37 Total: -14.90 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.05 Total: 50.22 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -58.04 5.59 -52.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.826 kcal (2) G-P(sol) polarization free energy of solvation -58.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds